Wall clock time and date at job start Tue Mar 31 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46715 * 2 1 4 4 C 1.36936 * 119.99574 * 83.51359 * 3 2 1 5 5 H 1.08001 * 120.00008 * 219.49217 * 4 3 2 6 6 C 1.38814 * 120.00261 * 39.49144 * 4 3 2 7 7 N 1.31615 * 120.00107 * 19.83222 * 6 4 3 8 8 Si 1.86803 * 119.99610 * 199.83407 * 6 4 3 9 9 H 1.48490 * 109.47663 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46939 * 120.00047 * 8 6 4 11 11 H 1.48498 * 109.46970 * 239.99553 * 8 6 4 12 12 S 1.65596 * 120.00196 * 263.50744 * 3 2 1 13 13 O 1.42098 * 106.40285 * 203.54245 * 12 3 2 14 14 O 1.42098 * 106.40478 * 336.46252 * 12 3 2 15 15 C 1.76199 * 107.21464 * 90.00292 * 12 3 2 16 16 S 1.75301 * 124.29926 * 269.69754 * 15 12 3 17 17 C 1.75896 * 92.20165 * 179.91464 * 16 15 12 18 18 C 1.39865 * 130.55168 * 180.02562 * 17 16 15 19 19 C 1.37457 * 120.17560 * 180.36507 * 18 17 16 20 20 C 1.38862 * 120.19071 * 0.02562 * 19 18 17 21 21 C 1.36083 * 120.59004 * 359.93816 * 20 19 18 22 22 C 1.39752 * 109.69593 * 0.34683 * 17 16 15 23 23 C 1.31871 * 124.29892 * 90.00228 * 15 12 3 24 24 Cl 1.73603 * 122.55907 * 0.02562 * 23 15 12 25 25 H 1.08996 * 109.46944 * 299.99367 * 1 2 3 26 26 H 1.08998 * 109.47147 * 59.99801 * 1 2 3 27 27 H 1.09007 * 109.46659 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47342 * 240.00334 * 2 1 3 29 29 H 1.08997 * 109.47421 * 119.99724 * 2 1 3 30 30 H 0.96999 * 119.99986 * 180.02562 * 7 6 4 31 31 H 1.07999 * 119.91269 * 0.38775 * 18 17 16 32 32 H 1.08007 * 119.90746 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.70457 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.77231 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1201 2.0714 1.1784 5 1 1.8498 3.1163 1.2173 6 6 2.5707 1.4280 2.3229 7 7 3.2569 0.3094 2.2220 8 14 2.2032 2.1498 4.0061 9 1 1.4225 3.4030 3.8477 10 1 1.4169 1.1736 4.8024 11 1 3.4784 2.4469 4.7065 12 16 2.4471 2.1080 -1.4249 13 8 3.3551 3.1477 -1.0877 14 8 2.7669 1.0599 -2.3295 15 6 1.0055 2.8942 -2.0638 16 16 -0.1395 2.1277 -3.1476 17 6 -1.1427 3.5709 -3.2177 18 6 -2.3329 3.8183 -3.9093 19 6 -2.9436 5.0462 -3.8165 20 6 -2.3821 6.0481 -3.0359 21 6 -1.2250 5.8283 -2.3541 22 6 -0.5759 4.5771 -2.4307 23 6 0.6539 4.1357 -1.7921 24 17 1.5882 5.1650 -0.7522 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5715 -0.1404 3.0218 31 1 -2.7735 3.0423 -4.5178 32 1 -3.8628 5.2325 -4.3521 33 1 -2.8683 7.0102 -2.9689 34 1 -0.8001 6.6168 -1.7506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450985809.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:19 Heat of formation + Delta-G solvation = -21.211865 kcal Electronic energy + Delta-G solvation = -23836.035477 eV Core-core repulsion = 20206.861217 eV Total energy + Delta-G solvation = -3629.174259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 345.005 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.65588 -36.79798 -36.06302 -35.85097 -34.73079 -34.64100 -31.73935 -31.19448 -29.57854 -29.21470 -24.63107 -23.98873 -23.12655 -21.65554 -20.95125 -18.77586 -18.32801 -17.13693 -16.43174 -16.31643 -16.04322 -15.50677 -14.79941 -14.50946 -14.36240 -14.16369 -13.92291 -13.54597 -13.37038 -12.82105 -12.42078 -12.22242 -12.18956 -11.95788 -11.63179 -11.33972 -11.20024 -11.01433 -10.99349 -10.97609 -10.85453 -10.76879 -10.66317 -10.37559 -10.24019 -10.13581 -9.77937 -9.65732 -9.07698 -8.82199 -7.73903 -7.67983 -6.30651 -4.02037 0.31061 1.05375 1.28912 1.31669 1.79249 1.88205 2.53319 3.17995 3.26805 3.31290 3.49182 4.08287 4.36368 4.48681 4.67602 4.70514 4.74171 5.01189 5.10539 5.13849 5.38221 5.41429 5.71968 5.80616 6.01705 6.08850 6.14158 6.24907 6.26913 6.35453 6.61148 6.61975 6.93109 7.30014 7.39246 7.73677 8.41203 8.95978 9.36049 10.71631 Molecular weight = 345.00amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.005176 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.784617 B = 5408.067929 C = 5932.337844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.831 5.831 4 C -0.272 4.272 5 H 0.093 0.907 6 C 0.041 3.959 7 N -0.852 5.852 8 Si 0.914 3.086 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.280 1.280 12 S 2.626 3.374 13 O -0.944 6.944 14 O -0.989 6.989 15 C -0.730 4.730 16 S 0.213 5.787 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.090 4.090 20 C -0.126 4.126 21 C -0.060 4.060 22 C -0.089 4.089 23 C 0.079 3.921 24 Cl -0.001 7.001 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.268 0.732 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 6.688 -8.158 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.664 5.664 4 C -0.410 4.410 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.491 5.491 8 Si 0.740 3.260 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.206 1.206 12 S 2.718 3.282 13 O -0.934 6.934 14 O -0.979 6.979 15 C -0.923 4.923 16 S 0.479 5.521 17 C -0.246 4.246 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.080 4.080 22 C -0.098 4.098 23 C 0.037 3.963 24 Cl 0.029 6.971 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.587 5.217 -9.191 15.683 hybrid contribution -0.637 1.962 1.522 2.564 sum -12.225 7.179 -7.669 16.118 Atomic orbital electron populations 1.22256 0.98574 1.00248 1.01565 1.21330 0.91712 0.83736 1.04428 1.52557 1.76291 1.20342 1.17163 1.19238 1.40749 0.96663 0.84394 0.88945 1.25471 0.94370 0.96797 1.00077 1.69976 1.31512 1.17832 1.29811 0.86069 0.78490 0.79337 0.82061 1.19047 1.20495 1.20579 1.05791 0.73140 0.74178 0.75097 1.93501 1.57747 1.59160 1.82988 1.93421 1.81861 1.55209 1.67381 1.35980 1.29620 1.09024 1.17693 1.83975 1.13148 1.10167 1.44814 1.23034 1.00326 0.99105 1.02176 1.20488 0.93170 0.98017 0.99576 1.21125 0.99468 0.92574 0.98001 1.20697 0.96075 0.99804 0.98078 1.20797 0.94663 0.94641 0.97875 1.19029 0.94693 0.95718 1.00365 1.20306 0.91791 0.90721 0.93464 1.98456 1.69759 1.66127 1.62804 0.92121 0.94127 0.93194 0.92172 0.87104 0.92138 0.85080 0.84974 0.85114 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.19 37.16 0.38 -2.76 16 2 C 0.11 2.59 6.03 -4.04 -0.02 2.56 16 3 N -0.83 -20.38 2.81 -59.91 -0.17 -20.55 16 4 C -0.27 -6.96 8.83 -15.06 -0.13 -7.09 16 5 H 0.09 2.31 7.47 -52.49 -0.39 1.92 16 6 C 0.04 1.05 5.04 -17.43 -0.09 0.96 16 7 N -0.85 -22.46 11.43 55.49 0.63 -21.83 16 8 Si 0.91 19.78 29.60 -169.99 -5.03 14.75 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 S 2.63 63.01 5.66 -107.50 -0.61 62.40 16 13 O -0.94 -24.47 14.74 -57.17 -0.84 -25.32 16 14 O -0.99 -24.86 16.39 -57.17 -0.94 -25.80 16 15 C -0.73 -14.77 6.45 28.83 0.19 -14.58 16 16 S 0.21 3.57 22.08 -107.50 -2.37 1.19 16 17 C -0.13 -1.93 6.48 -38.41 -0.25 -2.18 16 18 C -0.09 -1.02 10.07 -39.26 -0.40 -1.41 16 19 C -0.09 -0.85 10.03 -39.64 -0.40 -1.25 16 20 C -0.13 -1.25 9.95 -40.12 -0.40 -1.65 16 21 C -0.06 -0.76 9.89 -39.25 -0.39 -1.15 16 22 C -0.09 -1.41 6.04 -105.36 -0.64 -2.05 16 23 C 0.08 1.50 6.44 -38.62 -0.25 1.25 16 24 Cl 0.00 -0.01 26.00 -51.86 -1.35 -1.36 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.72 7.15 -51.93 -0.37 0.34 16 27 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.06 1.33 6.89 -51.93 -0.36 0.97 16 29 H 0.11 2.68 5.57 -51.93 -0.29 2.39 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -30.47 329.37 -11.19 -41.66 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.08 Total: -0.77 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -2.39 Total: -29.35 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.47 Total: -42.37 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -1.78 Total: -51.12 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Atomic # 16 Polarization: 66.58 SS G_CDS: -2.98 Total: 63.60 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.35 Total: -1.36 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.47 -11.19 -41.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450985809.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.450 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds