Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00374 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00114 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99945 * 3 2 1 7 7 C 1.40050 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00262 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99580 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00202 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99880 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46691 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46626 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 13 12 16 16 C 1.37843 * 120.00208 * 180.02562 * 15 14 13 17 17 N 1.32645 * 120.91219 * 359.97438 * 16 15 14 18 18 C 1.32332 * 121.49451 * 180.02562 * 17 16 15 19 19 N 1.31193 * 122.97179 * 359.97438 * 18 17 16 20 20 C 1.34120 * 120.46113 * 0.02562 * 19 18 17 21 21 C 1.40158 * 121.98413 * 179.97438 * 20 19 18 22 22 C 1.36310 * 119.57994 * 179.97438 * 21 20 19 23 23 C 1.39211 * 121.03203 * 0.02562 * 22 21 20 24 24 N 1.48016 * 119.55103 * 179.97438 * 23 22 21 25 25 O 1.21802 * 119.99963 * 359.97438 * 24 23 22 26 26 O 1.21802 * 120.00367 * 180.02562 * 24 23 22 27 27 C 1.36384 * 120.89970 * 359.97438 * 23 22 21 28 28 C 1.39932 * 119.50106 * 359.76190 * 27 23 22 29 29 H 0.97005 * 119.99882 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00043 * 359.97438 * 11 9 7 31 31 H 1.08993 * 109.47068 * 59.99359 * 12 11 9 32 32 H 1.09000 * 109.46872 * 299.99570 * 12 11 9 33 33 H 1.08993 * 109.47839 * 59.99891 * 13 12 11 34 34 H 1.09000 * 109.47160 * 299.99453 * 13 12 11 35 35 H 1.09000 * 109.47050 * 299.99699 * 14 13 12 36 36 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 37 37 H 0.97010 * 119.99910 * 359.97438 * 15 14 13 38 38 H 1.07997 * 118.51713 * 180.02562 * 18 17 16 39 39 H 1.08002 * 120.20312 * 0.02562 * 21 20 19 40 40 H 1.08007 * 119.48260 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.24946 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4806 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0016 12 6 1.2163 -4.9165 0.0010 13 6 2.2105 -6.0794 0.0018 14 6 1.4454 -7.4044 0.0018 15 7 2.3973 -8.5180 0.0020 16 6 1.9379 -9.8176 0.0015 17 7 0.6378 -10.0807 0.0014 18 6 0.1840 -11.3238 0.0015 19 7 0.9731 -12.3719 0.0011 20 6 2.3056 -12.2197 0.0012 21 6 3.1781 -13.3167 0.0013 22 6 4.5247 -13.1054 0.0008 23 6 5.0488 -11.8157 0.0007 24 7 6.5165 -11.6241 0.0007 25 8 7.2569 -12.5913 0.0013 26 8 6.9839 -10.4994 0.0011 27 6 4.2283 -10.7263 0.0006 28 6 2.8409 -10.9085 -0.0045 29 1 -0.4850 0.8401 0.0004 30 1 2.9188 -3.6478 0.0020 31 1 0.5906 -4.9744 -0.8896 32 1 0.5886 -4.9740 0.8903 33 1 2.8365 -6.0218 0.8922 34 1 2.8378 -6.0217 -0.8878 35 1 0.8184 -7.4619 0.8916 36 1 0.8191 -7.4623 -0.8884 37 1 3.3511 -8.3407 0.0016 38 1 -0.8842 -11.4827 0.0010 39 1 2.7858 -14.3229 0.0009 40 1 5.1956 -13.9518 0.0005 41 1 4.6462 -9.7304 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521394913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = 24.714898 kcal Electronic energy + Delta-G solvation = -27801.090297 eV Core-core repulsion = 23491.253276 eV Total energy + Delta-G solvation = -4309.837021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68091 -41.88410 -38.57142 -37.90719 -37.21876 -36.92614 -34.75743 -33.29102 -32.57502 -32.26384 -31.52643 -30.20224 -27.31143 -26.78938 -25.46138 -24.39389 -24.06632 -22.48861 -21.80310 -20.35598 -19.77725 -19.60304 -19.08913 -18.07032 -17.90835 -17.27980 -16.95804 -16.21766 -16.21356 -15.61879 -15.40773 -15.35092 -15.33545 -14.72883 -14.22840 -14.06009 -13.96268 -13.82668 -13.12344 -12.75564 -12.48286 -12.41467 -12.09356 -11.94966 -11.78211 -11.73991 -11.49661 -11.41818 -11.31420 -11.16104 -11.12337 -10.75301 -10.51624 -10.37324 -10.27223 -10.00007 -9.76783 -8.90707 -8.62429 -7.70196 -7.62257 -6.24618 -4.70490 -0.86023 -0.24062 0.51848 0.95227 1.20351 2.14409 2.23402 3.10418 3.17485 3.20684 3.37883 3.44489 3.49567 3.55275 3.75688 3.95905 4.04970 4.26605 4.36318 4.46763 4.52729 4.72404 4.76806 4.83905 5.04552 5.06613 5.13819 5.15244 5.40087 5.52939 5.53959 5.64961 5.75763 5.79454 5.94423 6.06634 6.33259 6.36831 6.39173 6.81289 7.24406 7.37800 7.67834 7.83720 7.99127 8.25265 8.96667 9.43846 10.53292 10.71336 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.001828 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.305777 B =15317.591058 C =17153.147606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.553 3.447 10 O -0.580 6.580 11 N -0.769 5.769 12 C 0.139 3.861 13 C -0.145 4.145 14 C 0.123 3.877 15 N -0.679 5.679 16 C 0.494 3.506 17 N -0.590 5.590 18 C 0.381 3.619 19 N -0.564 5.564 20 C 0.232 3.768 21 C -0.101 4.101 22 C -0.036 4.036 23 C -0.068 4.068 24 N 0.031 4.969 25 O -0.157 6.157 26 O -0.164 6.164 27 C 0.022 3.978 28 C -0.217 4.217 29 H 0.269 0.731 30 H 0.380 0.620 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.415 0.585 38 H 0.204 0.796 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -26.630 0.005 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.463 6.463 11 N -0.425 5.425 12 C 0.013 3.987 13 C -0.183 4.183 14 C 0.000 4.000 15 N -0.307 5.307 16 C 0.237 3.763 17 N -0.318 5.318 18 C 0.092 3.908 19 N -0.285 5.285 20 C 0.103 3.897 21 C -0.121 4.121 22 C -0.058 4.058 23 C -0.152 4.152 24 N 0.550 4.450 25 O -0.374 6.374 26 O -0.378 6.378 27 C 0.001 3.999 28 C -0.227 4.227 29 H 0.080 0.920 30 H 0.212 0.788 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.221 0.779 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.117 -26.618 0.009 26.935 hybrid contribution 2.543 1.104 -0.009 2.772 sum 6.659 -25.514 0.000 26.369 Atomic orbital electron populations 1.70016 1.07076 1.27353 1.35163 1.25719 0.94643 1.00359 0.92603 0.86361 0.80136 0.81328 0.78861 1.19716 1.20427 1.18901 1.20877 0.93584 0.89357 1.54444 0.91405 1.18237 0.87224 0.82411 0.76387 1.90606 1.14085 1.86800 1.54830 1.46134 1.08542 1.04784 1.83085 1.20668 0.93509 0.83333 1.01229 1.22051 0.99633 0.93438 1.03194 1.21607 0.91186 0.83159 1.04056 1.44940 1.10660 1.02212 1.72881 1.18615 0.88944 0.85156 0.83537 1.68172 1.12490 1.24977 1.26183 1.24946 1.00959 0.81500 0.83361 1.68995 1.02282 1.34194 1.22980 1.18997 0.91416 0.90671 0.88663 1.20682 0.90390 0.99365 1.01647 1.20699 0.96252 0.95218 0.93623 1.20643 0.79883 0.96438 1.18223 1.43549 1.03315 1.00602 0.97524 1.94545 1.57003 1.32491 1.53315 1.94569 1.79175 1.10337 1.53716 1.20643 0.91585 0.99346 0.88369 1.18785 0.93228 0.95625 1.15086 0.92043 0.78838 0.92989 0.92975 0.90783 0.90778 0.89920 0.89932 0.74705 0.77930 0.82080 0.82215 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.83 55.55 0.66 -22.04 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.75 29.56 -169.99 -5.02 14.73 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.55 -15.04 9.54 -35.63 -0.34 -15.38 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.55 15.28 7.75 -12.99 -0.10 15.18 16 10 O -0.58 -18.42 15.02 5.20 0.08 -18.34 16 11 N -0.77 -15.98 5.55 -61.72 -0.34 -16.32 16 12 C 0.14 2.31 5.67 -4.04 -0.02 2.29 16 13 C -0.14 -1.52 5.44 -26.73 -0.15 -1.67 16 14 C 0.12 1.13 5.73 -4.04 -0.02 1.10 16 15 N -0.68 -5.18 5.62 -59.97 -0.34 -5.51 16 16 C 0.49 4.38 7.55 -154.97 -1.17 3.21 16 17 N -0.59 -5.65 9.67 -13.54 -0.13 -5.78 16 18 C 0.38 3.11 12.22 -92.20 -1.13 1.98 16 19 N -0.56 -5.01 10.45 -12.65 -0.13 -5.14 16 20 C 0.23 1.96 6.61 -84.85 -0.56 1.40 16 21 C -0.10 -0.63 10.01 -39.56 -0.40 -1.03 16 22 C -0.04 -0.23 9.46 -39.91 -0.38 -0.61 16 23 C -0.07 -0.55 6.81 -80.25 -0.55 -1.10 16 24 N 0.03 0.32 4.45 33.81 0.15 0.47 16 25 O -0.16 -1.72 18.40 -29.46 -0.54 -2.26 16 26 O -0.16 -1.85 18.39 -29.46 -0.54 -2.40 16 27 C 0.02 0.17 9.03 -39.62 -0.36 -0.19 16 28 C -0.22 -1.80 5.75 -106.68 -0.61 -2.41 16 29 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 30 H 0.38 6.77 8.45 -40.82 -0.35 6.43 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.41 2.31 6.73 -40.82 -0.27 2.04 16 38 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.16 0.71 7.56 -52.48 -0.40 0.32 16 41 H 0.16 0.88 6.09 -52.49 -0.32 0.56 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -36.64 367.28 -10.77 -47.41 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.26 Total: 4.60 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -5.88 Total: 5.06 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.14 Total: -54.32 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.01 Total: -23.00 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.64 -10.77 -47.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521394913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.123 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds