Wall clock time and date at job start Tue Mar 31 2020 04:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99952 * 2 1 4 4 C 1.50703 * 109.46729 * 269.99686 * 3 2 1 5 5 H 1.07997 * 120.00336 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99710 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00308 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99909 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47232 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47273 * 120.00068 * 8 6 4 11 11 H 1.48505 * 109.47264 * 239.99952 * 8 6 4 12 12 C 1.34773 * 119.99758 * 179.97438 * 2 1 3 13 13 O 1.21287 * 120.00053 * 179.97438 * 12 2 1 14 14 C 1.50694 * 120.00290 * 0.02562 * 12 2 1 15 15 N 1.46909 * 109.47270 * 179.97438 * 14 12 2 16 16 C 1.47899 * 110.99710 * 69.87450 * 15 14 12 17 17 C 1.53997 * 107.05769 * 145.84538 * 16 15 14 18 18 C 1.54600 * 105.13844 * 358.77305 * 17 16 15 19 19 C 1.49006 * 110.96879 * 187.31470 * 15 14 12 20 20 H 1.09000 * 110.68291 * 318.61375 * 19 15 14 21 21 C 1.50699 * 110.86287 * 81.89890 * 19 15 14 22 22 O 1.21286 * 120.00305 * 355.09695 * 21 19 15 23 23 N 1.34777 * 119.99701 * 175.10329 * 21 19 15 24 24 C 1.39930 * 119.99718 * 175.37771 * 23 21 19 25 25 C 1.38876 * 120.07055 * 214.80659 * 24 23 21 26 26 C 1.38111 * 119.92839 * 179.75204 * 25 24 23 27 27 C 1.38283 * 120.07079 * 0.52816 * 26 25 24 28 28 C 1.38286 * 120.14047 * 359.74969 * 27 26 25 29 29 C 1.38112 * 120.06972 * 359.97291 * 28 27 26 30 30 H 1.08999 * 109.47062 * 270.00428 * 1 2 3 31 31 H 1.08997 * 109.46908 * 30.00867 * 1 2 3 32 32 H 1.08997 * 109.46950 * 150.00491 * 1 2 3 33 33 H 1.09000 * 109.47439 * 29.99238 * 3 2 1 34 34 H 1.09000 * 109.47220 * 149.99810 * 3 2 1 35 35 H 0.97000 * 120.00213 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47358 * 59.99753 * 14 12 2 37 37 H 1.08997 * 109.47182 * 299.99571 * 14 12 2 38 38 H 1.09000 * 109.91920 * 26.49047 * 16 15 14 39 39 H 1.09006 * 110.08040 * 265.28560 * 16 15 14 40 40 H 1.08992 * 110.30619 * 239.85548 * 17 16 15 41 41 H 1.08999 * 110.30639 * 117.68602 * 17 16 15 42 42 H 1.08995 * 110.72131 * 96.40260 * 18 17 16 43 43 H 1.08998 * 110.72113 * 219.50589 * 18 17 16 44 44 H 0.96997 * 120.00363 * 355.37449 * 23 21 19 45 45 H 1.07999 * 120.03311 * 0.02664 * 25 24 23 46 46 H 1.08000 * 119.96651 * 180.28080 * 26 25 24 47 47 H 1.07996 * 119.93013 * 179.76983 * 27 26 25 48 48 H 1.08003 * 119.96716 * 179.97438 * 28 27 26 49 49 H 1.07997 * 120.03589 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.5542 3.6175 -0.6733 8 14 3.4390 3.4161 -3.4341 9 1 2.8619 2.4155 -4.3675 10 1 2.8019 4.7370 -3.6679 11 1 4.9017 3.5238 -3.6671 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 7 2.3400 -3.5889 0.0005 16 6 3.0455 -3.6830 1.2970 17 6 3.2961 -5.1782 1.5675 18 6 2.6637 -5.9173 0.3659 19 6 1.6376 -4.8910 -0.1766 20 1 0.7202 -4.9166 0.4114 21 6 1.3455 -5.1496 -1.6323 22 8 1.5995 -4.3019 -2.4617 23 7 0.8019 -6.3228 -2.0124 24 6 0.4414 -6.5263 -3.3490 25 6 -0.6769 -7.2889 -3.6597 26 6 -1.0331 -7.4837 -4.9798 27 6 -0.2713 -6.9293 -5.9920 28 6 0.8461 -6.1742 -5.6861 29 6 1.2043 -5.9710 -4.3679 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8899 -0.5140 32 1 -0.3633 -0.8900 -0.5137 33 1 1.6084 2.0284 0.5137 34 1 3.1499 1.1384 0.5139 35 1 4.0317 4.4430 -0.8505 36 1 0.7591 -2.5302 -0.8896 37 1 0.7585 -2.5298 0.8903 38 1 2.4260 -3.2612 2.0884 39 1 3.9954 -3.1507 1.2457 40 1 2.8115 -5.4810 2.4956 41 1 4.3662 -5.3799 1.6151 42 1 3.4178 -6.1441 -0.3877 43 1 2.1621 -6.8278 0.6937 44 1 0.6607 -7.0261 -1.3595 45 1 -1.2699 -7.7256 -2.8697 46 1 -1.9052 -8.0729 -5.2220 47 1 -0.5497 -7.0862 -7.0236 48 1 1.4393 -5.7429 -6.4789 49 1 2.0768 -5.3809 -4.1296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058213770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:55 Heat of formation + Delta-G solvation = -18.207963 kcal Electronic energy + Delta-G solvation = -30411.957993 eV Core-core repulsion = 26339.633135 eV Total energy + Delta-G solvation = -4072.324858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89966 -39.50907 -38.52376 -37.52489 -34.94620 -34.65639 -32.67952 -32.12724 -31.07992 -30.58541 -28.74774 -28.18193 -26.45377 -25.32933 -23.81539 -22.95960 -22.50476 -21.85214 -20.97063 -20.11321 -18.34233 -18.12638 -17.39626 -16.52320 -16.42550 -16.26267 -15.98881 -15.35095 -15.32238 -14.92759 -14.68959 -14.36628 -14.29337 -14.05271 -13.78173 -13.56613 -13.28626 -13.20524 -12.94974 -12.46475 -12.36528 -12.13283 -12.07951 -11.95753 -11.83973 -11.75260 -11.44757 -11.32632 -11.24762 -11.12345 -10.78754 -10.73938 -10.51716 -10.50746 -10.07139 -9.80994 -9.51157 -9.09855 -8.85395 -8.36233 -8.34131 -8.26384 -7.53746 -5.96850 -4.00584 1.08366 1.23448 2.46354 2.68974 3.36253 3.43557 3.47992 3.55770 3.64494 3.70351 4.15708 4.31184 4.42323 4.54387 4.66600 4.73117 4.76440 4.77607 4.98242 4.99596 5.20047 5.22844 5.29055 5.34955 5.37407 5.38821 5.42017 5.49924 5.53818 5.60746 5.74909 5.79781 5.84142 5.93116 5.96633 6.12466 6.15823 6.24358 6.25773 6.31823 6.41145 6.73331 6.87446 6.90168 7.15716 7.19739 7.51337 7.64514 8.00654 8.00913 8.32287 8.51490 9.00571 9.23141 9.64597 11.11275 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.003022 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.092346 B = 9262.711669 C =11228.648179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.606 5.606 3 C 0.247 3.753 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.510 3.490 13 O -0.522 6.522 14 C 0.031 3.969 15 N -0.471 5.471 16 C 0.041 3.959 17 C -0.128 4.128 18 C -0.112 4.112 19 C 0.044 3.956 20 H 0.082 0.918 21 C 0.520 3.480 22 O -0.484 6.484 23 N -0.679 5.679 24 C 0.148 3.852 25 C -0.149 4.149 26 C -0.104 4.104 27 C -0.139 4.139 28 C -0.101 4.101 29 C -0.120 4.120 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.408 0.592 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 -26.772 1.019 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C 0.128 3.872 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.296 3.704 13 O -0.398 6.398 14 C -0.100 4.100 15 N -0.196 5.196 16 C -0.086 4.086 17 C -0.167 4.167 18 C -0.150 4.150 19 C -0.068 4.068 20 H 0.100 0.900 21 C 0.306 3.694 22 O -0.355 6.355 23 N -0.326 5.326 24 C 0.054 3.946 25 C -0.170 4.170 26 C -0.123 4.123 27 C -0.157 4.157 28 C -0.120 4.120 29 C -0.141 4.141 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.243 0.757 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.465 -25.768 0.109 27.451 hybrid contribution -0.748 0.040 -0.037 0.750 sum -10.213 -25.728 0.072 27.681 Atomic orbital electron populations 1.21610 0.81741 1.02535 1.00093 1.48133 1.05989 1.07768 1.72105 1.19260 0.92463 0.77988 0.97485 1.21511 1.36066 1.06055 0.92442 0.92360 1.24931 0.95404 0.96420 0.97409 1.69946 1.38712 1.14406 1.30627 0.86451 0.78084 0.78206 0.84776 1.19721 1.21031 1.20875 1.19956 0.88185 0.84448 0.77854 1.90653 1.13537 1.86795 1.48785 1.22280 0.94389 0.91226 1.02151 1.64292 1.23811 0.99023 1.32430 1.22947 1.01085 0.95871 0.88700 1.22422 1.01991 0.94853 0.97387 1.22454 0.97678 0.96404 0.98480 1.22797 0.98378 0.93349 0.92283 0.90048 1.20580 0.76682 0.81075 0.91084 1.90788 1.47429 1.44340 1.52900 1.43541 1.63529 1.17135 1.08354 1.17773 0.94267 0.98852 0.83682 1.20876 0.95987 1.02817 0.97293 1.20912 0.99533 0.99731 0.92122 1.21149 0.96179 0.99099 0.99310 1.21132 0.96975 0.97663 0.96183 1.21411 1.00422 1.00474 0.91746 0.93949 0.90717 0.92791 0.95104 0.93889 0.92876 0.88149 0.92697 0.93803 0.88267 0.91214 0.90362 0.90010 0.90327 0.75651 0.85889 0.85852 0.86096 0.85685 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 10.24 59.85 0.61 2.04 16 2 N -0.61 -13.63 2.86 -182.96 -0.52 -14.15 16 3 C 0.25 6.75 5.16 -5.19 -0.03 6.72 16 4 C -0.52 -15.57 9.39 -34.44 -0.32 -15.89 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 8 Si 0.90 22.92 29.54 -169.99 -5.02 17.89 16 9 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 12 C 0.51 11.33 7.47 -10.99 -0.08 11.25 16 13 O -0.52 -13.79 14.66 5.55 0.08 -13.71 16 14 C 0.03 0.51 3.61 -4.97 -0.02 0.49 16 15 N -0.47 -7.32 4.29 -225.03 -0.97 -8.28 16 16 C 0.04 0.56 5.76 -2.75 -0.02 0.55 16 17 C -0.13 -1.18 6.93 -25.37 -0.18 -1.36 16 18 C -0.11 -0.93 6.37 -24.87 -0.16 -1.09 16 19 C 0.04 0.48 2.73 -66.67 -0.18 0.30 16 20 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 21 C 0.52 6.58 6.87 -10.99 -0.08 6.50 16 22 O -0.48 -8.57 13.14 5.55 0.07 -8.50 16 23 N -0.68 -6.29 5.29 -9.86 -0.05 -6.35 16 24 C 0.15 1.60 6.30 -83.69 -0.53 1.07 16 25 C -0.15 -1.29 9.97 -39.39 -0.39 -1.68 16 26 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 27 C -0.14 -1.26 10.04 -39.55 -0.40 -1.65 16 28 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 29 C -0.12 -1.52 8.70 -39.39 -0.34 -1.86 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.05 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.10 1.69 6.52 -51.93 -0.34 1.36 16 37 H 0.06 0.74 7.78 -51.93 -0.40 0.34 16 38 H 0.04 0.57 7.57 -51.93 -0.39 0.17 16 39 H 0.10 1.65 7.39 -51.93 -0.38 1.27 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.41 2.22 8.75 -40.82 -0.36 1.87 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 49 H 0.14 2.09 6.22 -52.49 -0.33 1.77 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -38.41 400.70 -10.15 -48.57 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.52 Total: 0.94 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -3.00 Total: 4.33 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.80 Total: -55.57 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.15 Total: -22.20 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.41 -10.15 -48.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058213770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.357 kcal (2) G-P(sol) polarization free energy of solvation -38.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds