Wall clock time and date at job start Tue Mar 31 2020 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46497 * 109.47503 * 2 1 4 4 N 1.40069 * 126.04999 * 270.00299 * 3 2 1 5 5 C 1.30844 * 108.37969 * 179.97438 * 4 3 2 6 6 C 1.39761 * 108.32071 * 359.77702 * 5 4 3 7 7 C 1.35265 * 126.04873 * 89.99645 * 3 2 1 8 8 N 1.39471 * 126.21272 * 359.96658 * 7 3 2 9 9 C 1.34777 * 120.00021 * 179.97438 * 8 7 3 10 10 O 1.21289 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00369 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47466 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.39877 * 126.03804 * 90.02450 * 13 12 11 15 15 C 1.50699 * 125.89849 * 359.95788 * 14 13 12 16 16 N 1.30837 * 108.20185 * 179.97438 * 14 13 12 17 17 N 1.40091 * 108.20322 * 0.02562 * 16 14 13 18 18 C 1.46494 * 126.03223 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.47304 * 90.02275 * 18 17 16 20 20 H 1.07993 * 119.99641 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00061 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00187 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47388 * 89.99464 * 23 21 19 25 25 H 1.48498 * 109.46957 * 209.99685 * 23 21 19 26 26 H 1.48502 * 109.46541 * 329.99114 * 23 21 19 27 27 C 1.34943 * 107.92530 * 359.75682 * 17 16 14 28 28 C 1.50699 * 126.12512 * 180.23998 * 27 17 16 29 29 H 1.09002 * 109.47367 * 59.99994 * 1 2 3 30 30 H 1.09002 * 109.47702 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47303 * 300.00110 * 1 2 3 32 32 H 1.09004 * 109.47484 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47367 * 120.00006 * 2 1 3 34 34 H 1.08001 * 125.84469 * 180.02562 * 5 4 3 35 35 H 1.07998 * 126.08508 * 180.25535 * 6 5 4 36 36 H 0.97003 * 120.00338 * 0.02562 * 8 7 3 37 37 H 1.09002 * 109.47120 * 59.99760 * 11 9 8 38 38 H 1.08998 * 109.46862 * 300.00562 * 11 9 8 39 39 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 40 40 H 1.09001 * 109.46832 * 299.99964 * 12 11 9 41 41 H 1.08992 * 109.47376 * 89.99804 * 15 14 13 42 42 H 1.09003 * 109.46949 * 210.00143 * 15 14 13 43 43 H 1.09001 * 109.47332 * 329.99951 * 15 14 13 44 44 H 1.09006 * 109.46820 * 210.02240 * 18 17 16 45 45 H 1.08996 * 109.47479 * 330.02113 * 18 17 16 46 46 H 0.96999 * 120.00102 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.47581 * 270.17846 * 28 27 17 48 48 H 1.08996 * 109.47395 * 30.17544 * 28 27 17 49 49 H 1.09003 * 109.47313 * 150.17721 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2931 2.1583 -1.1325 5 6 2.7082 3.3339 -0.7353 6 6 2.7083 3.3506 0.6622 7 6 2.2836 2.1316 1.0936 8 7 2.1413 1.7313 2.4220 9 6 2.4440 2.5856 3.4195 10 8 2.8397 3.7028 3.1619 11 6 2.2907 2.1529 4.8548 12 6 2.6970 3.3017 5.7801 13 6 2.5432 2.8691 7.2154 14 6 3.5255 2.2558 7.9999 15 6 4.9237 1.9114 7.5554 16 7 3.0207 2.0324 9.1861 17 7 1.6990 2.4967 9.1938 18 6 0.7725 2.4407 10.3272 19 6 0.9052 3.6982 11.1471 20 1 1.6090 4.4627 10.8531 21 6 0.1275 3.8729 12.2720 22 7 0.2436 4.9701 12.9879 23 14 -1.0904 2.5507 12.7802 24 1 -0.4238 1.5884 13.6939 25 1 -2.2412 3.1793 13.4773 26 1 -1.5745 1.8335 11.5733 27 6 1.4320 3.0099 7.9747 28 6 0.1287 3.6266 7.5363 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9972 4.1527 -1.3775 35 1 2.9964 4.1821 1.2883 36 1 1.8251 0.8377 2.6281 37 1 2.9292 1.2900 5.0444 38 1 1.2515 1.8844 5.0443 39 1 2.0582 4.1643 5.5904 40 1 3.7362 3.5705 5.5906 41 1 5.5874 2.7512 7.7607 42 1 5.2713 1.0324 8.0982 43 1 4.9236 1.7015 6.4858 44 1 -0.2492 2.3543 9.9573 45 1 1.0087 1.5760 10.9473 46 1 -0.3033 5.0929 13.7795 47 1 -0.5164 2.8540 7.1180 48 1 -0.3630 4.0852 8.3941 49 1 0.3228 4.3868 6.7795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065563455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:57 Heat of formation + Delta-G solvation = 107.098402 kcal Electronic energy + Delta-G solvation = -29484.930503 eV Core-core repulsion = 25450.332088 eV Total energy + Delta-G solvation = -4034.598415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77586 -40.76616 -39.74496 -35.40974 -34.70136 -34.49656 -33.50514 -32.53810 -30.80455 -29.89654 -29.42673 -29.01853 -26.91780 -26.15709 -24.40053 -24.04061 -22.36099 -21.79635 -20.86784 -20.09030 -18.94866 -18.75816 -18.38301 -17.16667 -16.93951 -16.24479 -15.81054 -15.54870 -15.24307 -15.01322 -14.67727 -14.37433 -14.04792 -13.95049 -13.81723 -13.34216 -13.22848 -13.00482 -12.94425 -12.83113 -12.66507 -12.53745 -12.40619 -12.30329 -12.12017 -11.95130 -11.84793 -11.60208 -11.38363 -11.25482 -11.04249 -10.92071 -10.82523 -10.78780 -10.27261 -10.06638 -9.75341 -9.71599 -9.26872 -8.83037 -8.32824 -8.30710 -7.60630 -6.30734 -4.34414 1.45702 1.83629 2.37815 2.59779 2.76007 2.82721 3.10848 3.16247 3.18302 3.25739 3.43078 4.06072 4.16629 4.32577 4.46263 4.65419 4.71752 4.94829 4.98098 5.00867 5.03276 5.14750 5.19636 5.23740 5.32225 5.35992 5.53484 5.55433 5.58172 5.70129 5.72529 5.81382 5.85629 5.89311 5.91531 5.93823 6.14311 6.23424 6.28774 6.35099 6.44561 6.52849 6.70100 6.72223 6.86729 6.96524 7.23700 7.35033 7.52374 7.76677 7.79675 8.26141 8.52590 8.74574 9.24114 10.81688 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.002043 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.850186 B =13704.110059 C =14184.226048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.390 5.390 4 N -0.297 5.297 5 C 0.059 3.941 6 C -0.283 4.283 7 C 0.309 3.691 8 N -0.656 5.656 9 C 0.520 3.480 10 O -0.500 6.500 11 C -0.128 4.128 12 C -0.012 4.012 13 C -0.267 4.267 14 C 0.056 3.944 15 C -0.065 4.065 16 N -0.294 5.294 17 N -0.325 5.325 18 C 0.230 3.770 19 C -0.542 4.542 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.885 5.885 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.265 1.265 27 C 0.099 3.901 28 C -0.094 4.094 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.409 0.591 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.269 0.731 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -10.786 -25.017 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.178 5.178 4 N -0.119 5.119 5 C -0.127 4.127 6 C -0.315 4.315 7 C 0.089 3.911 8 N -0.304 5.304 9 C 0.308 3.692 10 O -0.371 6.371 11 C -0.168 4.168 12 C -0.051 4.051 13 C -0.279 4.279 14 C -0.109 4.109 15 C -0.124 4.124 16 N -0.117 5.117 17 N -0.104 5.104 18 C 0.111 3.889 19 C -0.580 4.580 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.522 5.522 23 Si 0.700 3.300 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.032 4.032 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.202 0.798 35 H 0.191 0.809 36 H 0.245 0.755 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.164 -11.226 -24.603 27.068 hybrid contribution -0.919 -0.327 0.599 1.145 sum 0.245 -11.553 -24.004 26.641 Atomic orbital electron populations 1.22217 0.94173 1.03204 1.03446 1.21622 0.95312 0.78195 1.04328 1.48728 1.54573 1.12186 1.02344 1.77430 1.24031 1.04785 1.05616 1.23797 0.98225 0.95545 0.95104 1.21714 1.16569 0.98319 0.94869 1.18123 1.00282 0.92228 0.80465 1.43185 1.66835 1.18227 1.02167 1.21273 0.76054 0.84575 0.87275 1.90663 1.42697 1.19883 1.83888 1.21783 1.04635 1.02178 0.88202 1.19432 1.02368 0.95186 0.88122 1.19300 0.94400 1.16721 0.97524 1.21984 0.96773 1.00465 0.91712 1.20042 0.90098 1.01777 1.00476 1.77291 0.91749 1.22906 1.19749 1.48810 1.09223 1.42595 1.09731 1.19979 0.86364 0.99678 0.82907 1.21160 1.24484 1.02550 1.09839 0.90131 1.24821 0.96600 0.95588 0.95539 1.69874 1.39876 1.25778 1.16630 0.86889 0.81337 0.82131 0.79627 1.19611 1.20511 1.18958 1.20765 0.97305 0.98482 0.86623 1.20444 0.92147 1.00077 1.02599 0.91343 0.90321 0.92101 0.88298 0.89599 0.79784 0.80949 0.75519 0.88385 0.88441 0.90955 0.90847 0.91131 0.91551 0.91382 0.93494 0.93698 0.92074 0.91263 0.89829 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.15 0.38 -0.45 16 2 C 0.13 0.70 6.97 -4.05 -0.03 0.67 16 3 N -0.39 -3.70 3.62 -60.40 -0.22 -3.92 16 4 N -0.30 -3.34 12.56 30.60 0.38 -2.95 16 5 C 0.06 0.62 12.01 -17.40 -0.21 0.41 16 6 C -0.28 -3.32 9.65 -39.78 -0.38 -3.70 16 7 C 0.31 3.22 7.66 -153.16 -1.17 2.04 16 8 N -0.66 -5.34 5.42 -11.46 -0.06 -5.40 16 9 C 0.52 5.24 7.79 -10.99 -0.09 5.16 16 10 O -0.50 -6.72 13.11 5.55 0.07 -6.65 16 11 C -0.13 -1.16 5.68 -27.89 -0.16 -1.32 16 12 C -0.01 -0.15 4.45 -27.88 -0.12 -0.28 16 13 C -0.27 -4.35 5.35 -105.05 -0.56 -4.91 16 14 C 0.06 0.98 7.22 -82.40 -0.59 0.39 16 15 C -0.07 -0.85 10.12 36.01 0.36 -0.49 16 16 N -0.29 -6.37 12.58 33.67 0.42 -5.95 16 17 N -0.32 -7.10 3.60 -58.32 -0.21 -7.31 16 18 C 0.23 5.36 4.88 -5.19 -0.03 5.34 16 19 C -0.54 -14.92 9.94 -34.44 -0.34 -15.27 16 20 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 21 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.88 -26.02 13.96 55.43 0.77 -25.24 16 23 Si 0.87 19.82 27.47 -169.99 -4.67 15.15 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 27 C 0.10 1.82 6.93 -82.27 -0.57 1.25 16 28 C -0.09 -1.41 9.68 36.01 0.35 -1.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.28 7.50 -51.93 -0.39 -0.11 16 34 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.17 2.22 5.83 -52.49 -0.31 1.91 16 36 H 0.41 1.95 7.96 -40.82 -0.33 1.63 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.94 7.09 -51.93 -0.37 0.57 16 40 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 44 H 0.05 1.02 6.73 -51.93 -0.35 0.67 16 45 H 0.05 1.05 7.57 -51.93 -0.39 0.66 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.42 7.74 -51.93 -0.40 1.01 16 49 H 0.08 1.02 7.14 -51.93 -0.37 0.65 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -35.37 408.19 -8.16 -43.52 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.54 Total: 2.74 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.26 Total: -10.15 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 1.09 Total: -50.78 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: 0.07 Total: -6.65 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.67 Total: 15.15 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.37 -8.16 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.622 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds