Wall clock time and date at job start Tue Mar 31 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46771 * 232.86185 * 3 2 1 5 5 N 1.46503 * 109.47119 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99667 * 269.99977 * 5 4 3 7 7 C 1.50701 * 109.47202 * 269.99782 * 6 5 4 8 8 H 1.07994 * 119.99772 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99772 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99761 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00335 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46963 * 89.99878 * 11 9 7 13 13 H 1.48501 * 109.47123 * 209.99692 * 11 9 7 14 14 H 1.48495 * 109.46910 * 330.00211 * 11 9 7 15 15 C 1.34773 * 120.00012 * 89.99853 * 5 4 3 16 16 O 1.21281 * 119.99922 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00060 * 0.02562 * 15 5 4 18 18 N 1.46904 * 109.46940 * 179.97438 * 17 15 5 19 19 C 1.46846 * 110.99942 * 66.04866 * 18 17 15 20 20 C 1.53035 * 109.52744 * 174.16069 * 19 18 17 21 21 C 1.53123 * 109.27774 * 59.17321 * 20 19 18 22 22 C 1.53114 * 109.16198 * 302.35270 * 21 20 19 23 23 H 1.09007 * 109.53693 * 297.69232 * 22 21 20 24 24 C 1.50696 * 109.50126 * 177.59670 * 22 21 20 25 25 C 1.35319 * 126.12823 * 94.90916 * 24 22 21 26 26 C 1.39870 * 107.91606 * 179.90269 * 25 24 22 27 27 N 1.30839 * 108.20794 * 0.36140 * 26 25 24 28 28 N 1.34952 * 126.12733 * 275.21664 * 24 22 21 29 29 H 0.97004 * 126.03483 * 359.94911 * 28 24 22 30 30 C 1.46844 * 111.00328 * 301.83712 * 18 17 15 31 31 H 1.08999 * 109.47383 * 112.86750 * 3 2 1 32 32 H 1.08996 * 109.47340 * 352.85942 * 3 2 1 33 33 H 1.09002 * 109.47602 * 60.00086 * 4 3 2 34 34 H 1.09008 * 109.47332 * 299.99979 * 4 3 2 35 35 H 1.09001 * 109.46965 * 29.99917 * 6 5 4 36 36 H 1.09009 * 109.46591 * 149.99845 * 6 5 4 37 37 H 0.96998 * 119.99975 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.47116 * 59.99984 * 17 15 5 39 39 H 1.08999 * 109.46970 * 299.99870 * 17 15 5 40 40 H 1.09008 * 109.46456 * 294.17536 * 19 18 17 41 41 H 1.09003 * 109.46474 * 54.14041 * 19 18 17 42 42 H 1.08995 * 109.50534 * 179.12351 * 20 19 18 43 43 H 1.09011 * 109.49854 * 299.24031 * 20 19 18 44 44 H 1.09000 * 109.52219 * 182.44440 * 21 20 19 45 45 H 1.08998 * 109.51778 * 62.25946 * 21 20 19 46 46 H 1.07993 * 126.03991 * 0.03533 * 25 24 22 47 47 H 1.08005 * 125.89536 * 180.14252 * 26 25 24 48 48 H 1.09000 * 109.46271 * 305.85568 * 30 18 17 49 49 H 1.09008 * 109.46154 * 65.83367 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.8718 1.1500 5 7 4.5825 0.8730 1.1497 6 6 5.3160 -0.1380 1.9154 7 6 5.5670 0.3730 3.3107 8 1 5.2158 1.3530 3.5982 9 6 6.2460 -0.4101 4.2198 10 7 6.4647 0.0356 5.4377 11 14 6.8542 -2.1049 3.7223 12 1 8.2271 -1.9948 3.1671 13 1 6.8711 -2.9936 4.9119 14 1 5.9478 -2.6733 2.6925 15 6 5.2555 1.8041 0.4450 16 8 6.4683 1.8048 0.4444 17 6 4.5010 2.8443 -0.3422 18 7 5.4548 3.7356 -1.0160 19 6 6.2202 3.0109 -2.0385 20 6 7.0956 3.9962 -2.8161 21 6 8.0461 4.7029 -1.8456 22 6 7.2253 5.4094 -0.7633 23 1 6.5947 6.1707 -1.2228 24 6 8.1548 6.0583 0.2296 25 6 8.5729 7.3451 0.2082 26 6 9.4202 7.5405 1.3037 27 7 9.5138 6.4096 1.9550 28 7 8.7239 5.4587 1.2963 29 1 8.6065 4.5327 1.5604 30 6 6.3461 4.3832 -0.0452 31 1 2.9712 0.4002 -0.9469 32 1 2.9718 -1.0188 0.1277 33 1 2.7544 0.4724 2.0969 34 1 2.7537 1.8914 1.0223 35 1 4.7276 -1.0542 1.9644 36 1 6.2685 -0.3435 1.4268 37 1 6.9427 -0.5152 6.0772 38 1 3.8744 3.4271 0.3329 39 1 3.8743 2.3529 -1.0864 40 1 6.8526 2.2644 -1.5577 41 1 5.5324 2.5164 -2.7245 42 1 7.6752 3.4558 -3.5646 43 1 6.4630 4.7349 -3.3085 44 1 8.6416 5.4368 -2.3886 45 1 8.7052 3.9688 -1.3820 46 1 8.2989 8.0901 -0.5241 47 1 9.9149 8.4645 1.5648 48 1 5.7499 4.8854 0.7166 49 1 6.9781 3.6303 0.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065588992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:33 Heat of formation + Delta-G solvation = 73.291010 kcal Electronic energy + Delta-G solvation = -30988.027384 eV Core-core repulsion = 26951.962971 eV Total energy + Delta-G solvation = -4036.064414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29529 -40.19097 -38.21250 -36.94884 -35.49107 -33.98289 -32.86452 -32.09914 -31.13349 -30.82078 -29.08070 -28.59788 -26.83685 -24.19856 -23.62878 -23.52109 -22.05451 -21.55425 -20.32096 -19.78029 -18.71406 -17.83900 -17.40555 -16.95228 -16.72380 -16.13026 -15.34135 -15.17647 -14.85715 -14.79802 -14.61012 -14.52787 -14.22897 -14.06097 -13.81194 -13.69676 -13.41339 -13.14132 -13.02134 -12.77676 -12.59391 -12.55149 -12.28958 -12.21498 -12.01619 -11.74420 -11.66604 -11.29282 -11.16375 -10.90375 -10.85382 -10.68536 -10.60236 -10.53654 -10.47648 -10.28805 -9.98890 -9.65195 -9.45805 -8.71850 -8.55599 -8.04935 -8.00212 -6.21021 -4.21702 1.96991 2.59800 2.69898 2.87277 2.98291 3.01130 3.18215 3.23520 3.26369 3.43677 3.79546 4.03553 4.27086 4.54870 4.70444 4.76113 4.80370 4.92699 4.93306 4.94687 5.03435 5.07814 5.12621 5.23042 5.35077 5.44203 5.47685 5.51533 5.61023 5.62580 5.63964 5.76051 5.83227 5.85823 5.91627 5.95370 6.03735 6.10157 6.19188 6.36909 6.45487 6.69092 6.72930 6.90538 6.99375 7.05668 7.38214 7.44867 7.46372 7.76754 7.92545 8.30740 8.63546 8.81729 9.37988 10.91974 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.003880 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.260400 B = 7215.583558 C = 9553.068516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.215 3.785 3 C -0.049 4.049 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.214 3.786 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.479 3.521 16 O -0.534 6.534 17 C 0.030 3.970 18 N -0.510 5.510 19 C 0.037 3.963 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.020 4.020 23 H 0.100 0.900 24 C 0.104 3.896 25 C -0.279 4.279 26 C 0.042 3.958 27 N -0.295 5.295 28 N -0.464 5.464 29 H 0.442 0.558 30 C 0.033 3.967 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.144 0.856 47 H 0.180 0.820 48 H 0.071 0.929 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 8.655 -16.899 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.091 4.091 4 C -0.011 4.011 5 N -0.319 5.319 6 C 0.093 3.907 7 C -0.572 4.572 8 H 0.092 0.908 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.265 3.735 16 O -0.412 6.412 17 C -0.102 4.102 18 N -0.233 5.233 19 C -0.091 4.091 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.040 4.040 23 H 0.118 0.882 24 C -0.027 4.027 25 C -0.308 4.308 26 C -0.144 4.144 27 N -0.118 5.118 28 N -0.173 5.173 29 H 0.288 0.712 30 C -0.094 4.094 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.162 0.838 47 H 0.197 0.803 48 H 0.089 0.911 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.685 8.392 -15.937 18.090 hybrid contribution 0.742 -1.572 -0.044 1.739 sum -0.942 6.821 -15.981 17.401 Atomic orbital electron populations 1.81227 1.12993 1.08841 1.08630 1.29010 0.95018 0.93143 0.93189 1.19858 0.81606 1.05057 1.02540 1.21368 0.81629 0.99831 0.98289 1.48068 1.05079 1.31358 1.47406 1.19727 0.92450 0.86548 0.91958 1.21254 1.37445 1.04519 0.93951 0.90766 1.24856 0.95189 0.98066 0.94737 1.69888 1.40968 1.37676 1.04574 0.86882 0.80063 0.84481 0.78405 1.19982 1.21031 1.19026 1.21764 0.88689 0.82769 0.80234 1.90558 1.13965 1.72622 1.64034 1.22400 0.96022 0.93499 0.98236 1.62366 1.18360 1.29190 1.13347 1.22316 0.96743 0.96177 0.93828 1.21528 0.97374 0.98605 0.97370 1.21602 0.97666 0.99416 0.96171 1.19907 0.93766 0.97571 0.92790 0.88219 1.21062 0.97148 0.93668 0.90781 1.21186 1.08861 0.96298 1.04491 1.23816 0.99042 0.97100 0.94403 1.77382 1.15330 0.98651 1.20392 1.46533 1.36931 1.12835 1.21018 0.71243 1.22481 0.95890 0.96919 0.94153 0.87509 0.86736 0.88456 0.90102 0.95092 0.94403 0.92419 0.87857 0.88086 0.91687 0.91243 0.91402 0.91225 0.91457 0.91834 0.83816 0.80302 0.91054 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.99 18.54 42.15 0.78 -5.21 16 2 C 0.21 2.29 15.43 -20.76 -0.32 1.97 16 3 C -0.05 -0.42 6.03 -29.52 -0.18 -0.60 16 4 C 0.12 1.33 5.17 -4.04 -0.02 1.31 16 5 N -0.59 -9.38 2.46 -175.05 -0.43 -9.81 16 6 C 0.21 4.43 4.23 -5.19 -0.02 4.40 16 7 C -0.53 -13.84 9.94 -34.44 -0.34 -14.19 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 11 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -5.62 6.54 56.52 0.37 -5.25 16 15 C 0.48 7.45 7.09 -10.99 -0.08 7.37 16 16 O -0.53 -10.19 11.20 5.56 0.06 -10.13 16 17 C 0.03 0.34 4.41 -4.97 -0.02 0.31 16 18 N -0.51 -5.86 4.86 -236.11 -1.15 -7.01 16 19 C 0.04 0.41 5.09 -3.84 -0.02 0.39 16 20 C -0.11 -1.02 6.09 -26.65 -0.16 -1.19 16 21 C -0.11 -1.13 5.27 -26.61 -0.14 -1.27 16 22 C -0.02 -0.22 2.74 -91.70 -0.25 -0.47 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 24 C 0.10 1.31 5.91 -82.26 -0.49 0.82 16 25 C -0.28 -3.25 10.72 -40.01 -0.43 -3.68 16 26 C 0.04 0.53 12.02 -17.36 -0.21 0.32 16 27 N -0.30 -4.55 12.70 30.63 0.39 -4.16 16 28 N -0.46 -6.77 7.14 33.48 0.24 -6.53 16 29 H 0.44 6.58 8.16 -182.61 -1.49 5.09 16 30 C 0.03 0.43 4.03 -3.84 -0.02 0.42 16 31 H 0.11 0.67 7.22 -51.93 -0.38 0.30 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.08 0.77 6.44 -51.92 -0.33 0.43 16 35 H 0.03 0.61 7.13 -51.93 -0.37 0.23 16 36 H 0.04 0.85 6.85 -51.92 -0.36 0.49 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.10 1.07 7.40 -51.93 -0.38 0.69 16 39 H 0.10 0.84 7.11 -51.93 -0.37 0.47 16 40 H 0.06 0.90 6.00 -51.92 -0.31 0.59 16 41 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 48 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 49 H 0.08 1.29 4.63 -51.92 -0.24 1.05 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -33.48 395.25 -9.30 -42.78 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.46 Total: 6.28 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.79 Total: -2.13 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.61 Total: -58.23 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.06 Total: -10.13 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.48 -9.30 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065588992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.074 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds