Wall clock time and date at job start Tue Mar 31 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47170 * 309.07992 * 3 2 1 5 5 N 1.46506 * 109.47160 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00348 * 89.99750 * 5 4 3 7 7 C 1.50698 * 109.47393 * 89.99636 * 6 5 4 8 8 H 1.08005 * 119.99868 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00508 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99651 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00174 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47154 * 270.00264 * 11 9 7 13 13 H 1.48495 * 109.46860 * 30.00639 * 11 9 7 14 14 H 1.48504 * 109.46916 * 150.00606 * 11 9 7 15 15 C 1.34776 * 119.99470 * 269.99862 * 5 4 3 16 16 O 1.21288 * 119.99707 * 180.02562 * 15 5 4 17 17 C 1.50700 * 120.00118 * 359.97438 * 15 5 4 18 18 N 1.46907 * 109.46865 * 173.75026 * 17 15 5 19 19 C 1.46848 * 110.99598 * 169.39714 * 18 17 15 20 20 C 1.53033 * 109.51894 * 185.83852 * 19 18 17 21 21 C 1.53114 * 109.28107 * 300.82199 * 20 19 18 22 22 C 1.53119 * 109.16123 * 57.65682 * 21 20 19 23 23 H 1.08998 * 109.50413 * 62.28940 * 22 21 20 24 24 C 1.50704 * 109.53634 * 182.38643 * 22 21 20 25 25 C 1.35308 * 126.12380 * 264.82072 * 24 22 21 26 26 C 1.39875 * 107.91854 * 179.97438 * 25 24 22 27 27 N 1.30827 * 108.20154 * 0.02562 * 26 25 24 28 28 N 1.34950 * 126.12619 * 84.51430 * 24 22 21 29 29 H 0.96993 * 126.03420 * 0.03239 * 28 24 22 30 30 C 1.46839 * 111.00136 * 293.60816 * 18 17 15 31 31 H 1.09005 * 109.47381 * 189.07995 * 3 2 1 32 32 H 1.08996 * 109.47597 * 69.07977 * 3 2 1 33 33 H 1.08992 * 109.47240 * 60.00303 * 4 3 2 34 34 H 1.09002 * 109.46651 * 299.99760 * 4 3 2 35 35 H 1.09005 * 109.47139 * 329.99737 * 6 5 4 36 36 H 1.09004 * 109.47438 * 210.00061 * 6 5 4 37 37 H 0.96999 * 119.99708 * 359.97438 * 10 9 7 38 38 H 1.09006 * 109.46788 * 293.74502 * 17 15 5 39 39 H 1.08992 * 109.47582 * 53.75155 * 17 15 5 40 40 H 1.08999 * 109.46759 * 305.85407 * 19 18 17 41 41 H 1.08999 * 109.46112 * 65.82792 * 19 18 17 42 42 H 1.09007 * 109.50455 * 180.88204 * 20 19 18 43 43 H 1.08997 * 109.54207 * 60.78435 * 20 19 18 44 44 H 1.08995 * 109.52495 * 297.75077 * 21 20 19 45 45 H 1.09005 * 109.58069 * 177.59363 * 21 20 19 46 46 H 1.08003 * 126.04404 * 359.94427 * 25 24 22 47 47 H 1.08005 * 125.89928 * 180.02562 * 26 25 24 48 48 H 1.09006 * 109.46438 * 294.18329 * 30 18 17 49 49 H 1.09000 * 109.46018 * 54.14332 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9085 1.1198 5 7 4.5835 -0.9074 1.1202 6 6 5.3150 0.0779 1.9202 7 6 5.5662 -0.4799 3.2974 8 1 5.2163 -1.4697 3.5512 9 6 6.2437 0.2727 4.2332 10 7 6.6703 1.4777 3.9239 11 14 6.5557 -0.4192 5.9400 12 1 5.4256 -0.0600 6.8339 13 1 6.6738 -1.8973 5.8609 14 1 7.8157 0.1499 6.4821 15 6 5.2581 -1.8128 0.3844 16 8 6.4710 -1.8122 0.3851 17 6 4.5056 -2.8268 -0.4382 18 7 5.4538 -3.5944 -1.2565 19 6 4.7961 -4.7508 -1.8784 20 6 5.8400 -5.6051 -2.6012 21 6 6.5373 -4.7563 -3.6678 22 6 7.1727 -3.5333 -3.0006 23 1 7.9306 -3.8599 -2.2886 24 6 7.8115 -2.6613 -4.0507 25 6 9.1122 -2.6836 -4.4229 26 6 9.2903 -1.7217 -5.4226 27 7 8.1381 -1.1423 -5.6423 28 7 7.1874 -1.7223 -4.7923 29 1 6.2474 -1.4885 -4.7436 30 6 6.0902 -2.7391 -2.2662 31 1 2.9709 1.0156 0.1622 32 1 2.9716 -0.3661 -0.9599 33 1 2.7556 -1.9234 0.9576 34 1 2.7549 -0.5416 2.0797 35 1 4.7253 0.9911 2.0002 36 1 6.2674 0.3015 1.4394 37 1 6.5086 1.8368 3.0375 38 1 3.9662 -3.5039 0.2243 39 1 3.7971 -2.3136 -1.0883 40 1 4.3077 -5.3483 -1.1087 41 1 4.0519 -4.4033 -2.5950 42 1 5.3493 -6.4549 -3.0759 43 1 6.5770 -5.9649 -1.8834 44 1 5.8070 -4.4291 -4.4079 45 1 7.3114 -5.3477 -4.1568 46 1 9.8777 -3.3297 -4.0191 47 1 10.2188 -1.4962 -5.9262 48 1 5.3399 -2.4009 -2.9809 49 1 6.5417 -1.8754 -1.7780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072273023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:37 Heat of formation + Delta-G solvation = 65.628770 kcal Electronic energy + Delta-G solvation = -30602.699386 eV Core-core repulsion = 26566.302712 eV Total energy + Delta-G solvation = -4036.396673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45316 -39.88371 -38.46826 -36.96379 -35.39625 -34.19386 -33.16296 -32.27200 -31.04114 -30.91363 -29.02608 -28.38219 -26.25697 -24.16089 -23.79499 -23.64654 -22.40671 -21.76992 -20.50717 -19.92017 -18.82217 -17.73489 -17.53900 -17.03387 -16.67259 -15.92013 -15.56539 -15.25615 -14.88110 -14.83805 -14.67217 -14.49807 -14.22675 -14.00595 -13.73914 -13.61929 -13.57041 -13.49078 -13.08498 -13.00040 -12.73973 -12.55745 -12.32151 -12.16470 -11.85030 -11.73662 -11.66110 -11.43192 -11.17185 -11.11674 -10.91948 -10.77756 -10.73499 -10.70890 -10.60902 -10.14490 -9.64497 -9.26131 -9.14736 -8.70721 -8.43735 -8.39900 -7.83552 -6.43902 -4.16830 1.76852 2.59381 2.67744 2.72790 2.75770 3.16743 3.30174 3.40192 3.46100 3.60988 3.71532 4.06932 4.41193 4.49431 4.53525 4.59763 4.76614 4.76969 4.80944 4.89369 4.97428 5.01507 5.04634 5.10945 5.28483 5.30142 5.33131 5.33964 5.39867 5.44661 5.49123 5.61847 5.64546 5.66870 5.75264 5.80155 5.91509 5.93974 6.02622 6.15797 6.53062 6.59094 6.82380 6.91471 7.02320 7.13663 7.22054 7.44051 7.55458 7.95072 8.08101 8.36527 8.71521 8.86232 9.52522 10.93744 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008413 B = 0.003209 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.363878 B = 8723.793360 C = 9928.940511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.595 5.595 6 C 0.237 3.763 7 C -0.608 4.608 8 H 0.053 0.947 9 C 0.022 3.978 10 N -0.908 5.908 11 Si 1.072 2.928 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.283 1.283 15 C 0.507 3.493 16 O -0.511 6.511 17 C 0.035 3.965 18 N -0.515 5.515 19 C 0.053 3.947 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.022 4.022 23 H 0.111 0.889 24 C 0.106 3.894 25 C -0.271 4.271 26 C 0.050 3.950 27 N -0.300 5.300 28 N -0.474 5.474 29 H 0.434 0.566 30 C 0.059 3.941 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.023 0.977 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.147 0.853 47 H 0.182 0.818 48 H 0.021 0.979 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -11.768 -16.723 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.091 4.091 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.117 3.883 7 C -0.646 4.646 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.544 5.544 11 Si 0.900 3.100 12 H -0.215 1.215 13 H -0.214 1.214 14 H -0.209 1.209 15 C 0.292 3.708 16 O -0.385 6.385 17 C -0.096 4.096 18 N -0.239 5.239 19 C -0.074 4.074 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.043 4.043 23 H 0.129 0.871 24 C -0.024 4.024 25 C -0.300 4.300 26 C -0.137 4.137 27 N -0.122 5.122 28 N -0.182 5.182 29 H 0.277 0.723 30 C -0.070 4.070 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.165 0.835 47 H 0.199 0.801 48 H 0.039 0.961 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.333 -10.700 -15.624 19.228 hybrid contribution -1.055 -0.446 -1.446 1.845 sum -4.388 -11.146 -17.070 20.854 Atomic orbital electron populations 1.81220 1.12956 1.08921 1.08729 1.29054 0.95051 0.93081 0.93121 1.19887 0.81507 1.05132 1.02606 1.21293 0.82189 0.98882 0.98443 1.48034 1.04720 1.33884 1.46157 1.19378 0.91974 0.86254 0.90664 1.22249 1.40920 1.04159 0.97315 0.92896 1.25773 0.93225 0.94787 1.04494 1.70793 1.43943 1.16283 1.23410 0.83492 0.76872 0.75110 0.74513 1.21480 1.21442 1.20874 1.20197 0.88322 0.81742 0.80522 1.90695 1.13473 1.70657 1.63663 1.22110 0.93948 0.96568 0.96943 1.61429 1.31172 1.08518 1.22777 1.22166 0.95405 0.92331 0.97531 1.21572 0.98603 0.97388 0.97730 1.21632 0.99791 0.95813 0.97642 1.19946 0.98131 0.92974 0.93222 0.87132 1.21041 0.93536 0.92751 0.95040 1.21269 0.95915 1.07391 1.05412 1.23846 0.96847 0.95241 0.97725 1.77315 0.98583 1.21231 1.15081 1.46339 1.11121 1.30022 1.30758 0.72251 1.22210 0.95311 0.96832 0.92597 0.86612 0.87897 0.90623 0.88679 0.95929 0.94636 0.92216 0.87889 0.92710 0.90299 0.95013 0.91119 0.90359 0.92436 0.91018 0.83483 0.80075 0.96068 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.24 18.54 42.15 0.78 -5.45 16 2 C 0.22 2.47 15.43 -20.76 -0.32 2.15 16 3 C -0.05 -0.49 5.97 -29.52 -0.18 -0.66 16 4 C 0.12 1.50 5.08 -4.04 -0.02 1.48 16 5 N -0.60 -10.45 2.46 -175.06 -0.43 -10.88 16 6 C 0.24 5.45 4.47 -5.20 -0.02 5.43 16 7 C -0.61 -16.18 9.39 -34.44 -0.32 -16.51 16 8 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 9 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 10 N -0.91 -26.51 13.65 55.43 0.76 -25.76 16 11 Si 1.07 24.77 29.90 -169.99 -5.08 19.68 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.51 8.86 7.20 -10.99 -0.08 8.78 16 16 O -0.51 -11.34 14.29 5.55 0.08 -11.26 16 17 C 0.04 0.43 3.91 -4.97 -0.02 0.41 16 18 N -0.51 -6.14 4.35 -236.12 -1.03 -7.17 16 19 C 0.05 0.47 5.46 -3.84 -0.02 0.45 16 20 C -0.12 -0.89 6.09 -26.65 -0.16 -1.06 16 21 C -0.11 -0.90 5.27 -26.61 -0.14 -1.04 16 22 C -0.02 -0.23 2.74 -91.69 -0.25 -0.48 16 23 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 24 C 0.11 1.17 5.91 -82.26 -0.49 0.68 16 25 C -0.27 -2.96 10.72 -40.01 -0.43 -3.39 16 26 C 0.05 0.54 12.03 -17.37 -0.21 0.34 16 27 N -0.30 -3.80 12.70 30.63 0.39 -3.41 16 28 N -0.47 -5.27 7.14 33.48 0.24 -5.03 16 29 H 0.43 3.91 8.17 -182.61 -1.49 2.42 16 30 C 0.06 0.68 4.17 -3.84 -0.02 0.66 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 0.80 7.12 -51.93 -0.37 0.43 16 33 H 0.08 0.78 6.61 -51.93 -0.34 0.43 16 34 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 35 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.04 0.93 7.29 -51.93 -0.38 0.55 16 37 H 0.27 7.68 7.22 -40.82 -0.29 7.39 16 38 H 0.10 1.12 7.55 -51.93 -0.39 0.73 16 39 H 0.06 0.52 6.83 -51.93 -0.35 0.16 16 40 H 0.08 0.64 8.01 -51.93 -0.42 0.23 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 48 H 0.02 0.21 7.42 -51.93 -0.39 -0.18 16 49 H 0.10 1.49 6.06 -51.93 -0.31 1.18 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -34.96 402.87 -9.58 -44.54 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.58 Total: 0.91 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.77 Total: -2.26 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.71 Total: -57.70 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.96 -9.58 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072273023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.174 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds