Wall clock time and date at job start Tue Mar 31 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47222 * 2 1 4 4 C 1.50696 * 109.47120 * 119.99266 * 2 1 3 5 5 C 1.38264 * 119.99055 * 260.00337 * 4 2 1 6 6 C 1.38228 * 120.05233 * 180.02562 * 5 4 2 7 7 C 1.38223 * 120.02288 * 0.25437 * 6 5 4 8 8 C 1.38441 * 119.97265 * 359.47378 * 7 6 5 9 9 F 1.35099 * 120.02277 * 180.25735 * 8 7 6 10 10 C 1.38176 * 119.98401 * 80.02608 * 4 2 1 11 11 N 1.46895 * 109.47482 * 239.99798 * 2 1 3 12 12 C 1.46957 * 111.00382 * 183.79884 * 11 2 1 13 13 C 1.53046 * 109.36706 * 176.81145 * 12 11 2 14 14 N 1.46957 * 109.36598 * 58.39855 * 13 12 11 15 15 C 1.46903 * 111.00204 * 176.81208 * 14 13 12 16 16 C 1.52994 * 109.46997 * 189.88314 * 15 14 13 17 17 H 1.08997 * 109.47241 * 303.82281 * 16 15 14 18 18 C 1.47195 * 109.47640 * 63.82640 * 16 15 14 19 19 N 7.02183 * 119.58425 * 284.00730 * 2 1 3 20 20 C 1.53008 * 109.47143 * 183.82413 * 16 15 14 21 21 C 1.50699 * 109.47484 * 174.99853 * 20 16 15 22 22 H 1.08001 * 119.99266 * 359.97438 * 21 20 16 23 23 C 1.37873 * 119.99920 * 180.02562 * 21 20 16 24 24 N 1.31513 * 120.00283 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99564 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47332 * 59.99553 * 25 23 21 27 27 H 1.48501 * 109.46653 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47117 * 299.99185 * 25 23 21 29 29 C 1.46948 * 110.88141 * 300.68341 * 14 13 12 30 30 C 1.46965 * 110.99908 * 59.99780 * 11 2 1 31 31 H 1.09005 * 109.47071 * 60.00374 * 1 2 3 32 32 H 1.08998 * 109.47424 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47602 * 300.00255 * 1 2 3 34 34 H 1.08000 * 119.97557 * 359.97438 * 5 4 2 35 35 H 1.07993 * 119.99121 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.01037 * 179.72053 * 7 6 5 37 37 H 1.08002 * 120.01290 * 359.97438 * 10 4 2 38 38 H 1.09006 * 109.48709 * 296.77986 * 12 11 2 39 39 H 1.09000 * 109.48553 * 56.84101 * 12 11 2 40 40 H 1.09000 * 109.48833 * 298.43236 * 13 12 11 41 41 H 1.09000 * 109.50936 * 178.38293 * 13 12 11 42 42 H 1.09001 * 109.47059 * 309.88366 * 15 14 13 43 43 H 1.08998 * 109.46865 * 69.88104 * 15 14 13 44 44 H 1.09000 * 109.47045 * 295.00521 * 20 16 15 45 45 H 1.09003 * 109.46460 * 54.99828 * 20 16 15 46 46 H 0.96995 * 120.00276 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.49390 * 299.34818 * 29 14 13 48 48 H 1.09001 * 109.49167 * 179.28703 * 29 14 13 49 49 H 1.08993 * 109.48940 * 303.15934 * 30 11 2 50 50 H 1.08998 * 109.48567 * 63.20309 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2305 5 6 2.4586 0.0201 2.3244 6 6 2.9201 -0.6300 3.4536 7 6 2.9607 -2.0112 3.4883 8 6 2.5288 -2.7436 2.3957 9 9 2.5632 -4.0937 2.4306 10 6 2.0670 -2.0911 1.2650 11 7 2.0197 -0.6925 -1.1993 12 6 3.4859 -0.7913 -1.1887 13 6 3.9498 -1.5865 -2.4113 14 7 3.4786 -0.9202 -3.6335 15 6 3.9683 -1.6128 -4.8329 16 6 3.6705 -0.7630 -6.0698 17 1 2.6024 -0.5507 -6.1162 18 6 4.4189 0.5019 -5.9880 19 7 4.9966 1.4780 -5.9248 20 6 4.0940 -1.5257 -7.3267 21 6 3.6894 -0.7433 -8.5495 22 1 3.1807 0.2032 -8.4409 23 6 3.9678 -1.2362 -9.8066 24 7 4.5869 -2.3890 -9.9388 25 14 3.4669 -0.2658 -11.3222 26 1 4.1317 1.0619 -11.3020 27 1 3.8779 -1.0063 -12.5421 28 1 1.9934 -0.0816 -11.3274 29 6 2.0125 -0.8214 -3.6441 30 6 1.5484 -0.0262 -2.4215 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.4318 1.0994 2.2963 35 1 3.2533 -0.0586 4.3072 36 1 3.3256 -2.5189 4.3689 37 1 1.7338 -2.6614 0.4104 38 1 3.9180 0.2089 -1.2200 39 1 3.8095 -1.2993 -0.2802 40 1 3.5397 -2.5954 -2.3660 41 1 5.0386 -1.6367 -2.4212 42 1 5.0439 -1.7680 -4.7491 43 1 3.4682 -2.5768 -4.9254 44 1 5.1757 -1.6603 -7.3229 45 1 3.6066 -2.5006 -7.3415 46 1 4.7830 -2.7356 -10.8232 47 1 1.5803 -1.8216 -3.6128 48 1 1.6888 -0.3134 -4.5526 49 1 0.4597 0.0237 -2.4119 50 1 1.9583 0.9828 -2.4667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091689750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:48 Heat of formation + Delta-G solvation = -4.195783 kcal Electronic energy + Delta-G solvation = -29886.037251 eV Core-core repulsion = 25826.692796 eV Total energy + Delta-G solvation = -4059.344455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.85443 -41.06620 -39.79557 -38.28257 -36.71799 -35.48270 -33.95813 -32.57561 -32.05617 -31.42675 -30.19178 -28.84688 -26.76661 -25.19366 -24.21927 -23.92129 -23.30837 -23.20092 -21.55532 -20.64694 -18.56253 -18.38607 -18.10455 -17.72001 -17.07038 -16.85724 -16.59848 -16.48386 -15.89232 -15.88460 -15.78143 -15.47898 -15.43657 -14.98566 -14.70552 -14.54779 -14.24206 -14.09760 -14.04571 -13.75276 -13.67686 -13.39320 -13.11429 -13.01107 -12.96095 -12.77223 -12.70264 -12.56864 -12.48976 -12.42682 -12.24249 -12.19956 -12.16773 -11.77144 -11.68408 -11.46259 -11.30689 -11.05148 -10.54567 -9.83133 -9.62023 -9.39505 -9.18692 -8.18908 -6.27332 0.20060 0.30480 1.41263 1.43114 1.50037 2.06447 2.14148 2.41688 2.61060 2.86465 2.93321 3.16427 3.28646 3.35405 3.62756 3.90203 3.94119 4.00683 4.11966 4.19696 4.25075 4.28935 4.31894 4.34034 4.47711 4.51632 4.53145 4.55068 4.60371 4.73117 4.76700 4.79116 4.87180 4.91520 4.96791 5.00363 5.05254 5.09127 5.12286 5.17003 5.24296 5.35884 5.39744 5.46584 5.51739 5.61373 5.79098 5.95623 5.99202 6.01678 6.16906 6.21620 6.23945 6.83286 6.93488 7.41140 8.91802 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002059 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.013137 B =13592.805208 C =13976.279848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.121 3.879 3 H 0.055 0.945 4 C -0.054 4.054 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.160 4.160 8 C 0.071 3.929 9 F -0.154 7.154 10 C -0.134 4.134 11 N -0.533 5.533 12 C 0.066 3.934 13 C 0.061 3.939 14 N -0.553 5.553 15 C 0.074 3.926 16 C 0.023 3.977 17 H 0.117 0.883 18 C 0.268 3.732 19 N -0.514 5.514 20 C 0.038 3.962 21 C -0.538 4.538 22 H 0.054 0.946 23 C 0.011 3.989 24 N -0.923 5.923 25 Si 0.948 3.052 26 H -0.281 1.281 27 H -0.283 1.283 28 H -0.262 1.262 29 C 0.051 3.949 30 C 0.062 3.938 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.029 0.971 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.000 1.000 45 H 0.034 0.966 46 H 0.264 0.736 47 H 0.050 0.950 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 1.164 29.240 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.073 0.927 4 C -0.054 4.054 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.179 4.179 8 C 0.052 3.948 9 F -0.133 7.133 10 C -0.153 4.153 11 N -0.258 5.258 12 C -0.062 4.062 13 C -0.067 4.067 14 N -0.279 5.279 15 C -0.055 4.055 16 C 0.001 3.999 17 H 0.134 0.866 18 C -0.048 4.048 19 N -0.192 5.192 20 C 0.000 4.000 21 C -0.577 4.577 22 H 0.072 0.928 23 C -0.188 4.188 24 N -0.563 5.563 25 Si 0.774 3.226 26 H -0.207 1.207 27 H -0.208 1.208 28 H -0.186 1.186 29 C -0.077 4.077 30 C -0.066 4.066 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.047 0.953 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.019 0.981 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.100 0.900 49 H 0.119 0.881 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.157 2.463 29.208 30.426 hybrid contribution 0.017 -0.430 -1.330 1.398 sum -8.140 2.034 27.878 29.113 Atomic orbital electron populations 1.21859 0.91988 1.02880 1.02865 1.20585 0.96674 0.94761 0.86672 0.92699 1.19664 0.97709 0.92507 0.95549 1.21383 0.99075 1.01244 0.92850 1.21283 0.97357 0.93024 0.98899 1.21414 1.02712 0.95466 0.98297 1.18035 1.03397 0.76588 0.96772 1.91470 1.94631 1.30179 1.97010 1.21008 1.01816 0.95247 0.97241 1.62235 1.09841 1.51943 1.01786 1.22069 0.87554 0.98847 0.97776 1.22114 1.00033 0.96045 0.88511 1.62155 1.11157 1.52578 1.01978 1.22021 1.01167 0.95048 0.87242 1.19179 0.98773 0.85199 0.96748 0.86554 1.29311 0.92204 0.94007 0.89325 1.80974 1.11870 1.13777 1.12590 1.18983 0.96018 0.95418 0.89611 1.21506 1.38044 1.06013 0.92091 0.92752 1.25721 0.95178 0.95871 1.02044 1.70024 1.42062 1.20043 1.24196 0.85751 0.79360 0.78449 0.79037 1.20714 1.20790 1.18630 1.22278 0.86763 1.00170 0.98460 1.22192 1.01040 0.95173 0.88211 0.91271 0.92106 0.90877 0.83711 0.82324 0.83548 0.84891 0.95279 0.89860 0.93630 0.90438 0.90656 0.91420 0.98147 0.94748 0.92716 0.93199 0.89985 0.88066 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.94 71.98 0.64 -1.03 16 2 C 0.12 1.77 2.27 44.17 0.10 1.87 16 3 H 0.06 0.80 8.00 -2.38 -0.02 0.78 16 4 C -0.05 -0.79 3.73 -19.87 -0.07 -0.87 16 5 C -0.13 -1.48 9.67 22.27 0.22 -1.26 16 6 C -0.09 -0.91 10.04 22.26 0.22 -0.69 16 7 C -0.16 -2.16 10.03 22.31 0.22 -1.94 16 8 C 0.07 1.28 7.30 22.38 0.16 1.44 16 9 F -0.15 -3.28 17.27 44.97 0.78 -2.50 16 10 C -0.13 -2.34 8.09 22.31 0.18 -2.16 16 11 N -0.53 -9.54 3.91 -874.88 -3.42 -12.97 16 12 C 0.07 1.31 5.20 86.31 0.45 1.76 16 13 C 0.06 1.35 5.61 86.31 0.48 1.84 16 14 N -0.55 -14.19 4.38 -895.74 -3.92 -18.11 16 15 C 0.07 2.14 4.33 86.30 0.37 2.51 16 16 C 0.02 0.82 2.12 -12.60 -0.03 0.79 16 17 H 0.12 3.82 6.32 -2.39 -0.02 3.81 16 18 C 0.27 11.08 13.64 89.44 1.22 12.30 16 19 N -0.51 -23.33 18.54 20.00 0.37 -22.96 16 20 C 0.04 1.78 4.42 29.85 0.13 1.91 16 21 C -0.54 -28.48 8.60 25.60 0.22 -28.26 16 22 H 0.05 2.84 7.59 -2.91 -0.02 2.81 16 23 C 0.01 0.59 5.46 84.65 0.46 1.06 16 24 N -0.92 -53.14 13.29 21.45 0.28 -52.85 16 25 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 28 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 29 C 0.05 1.14 5.41 86.31 0.47 1.60 16 30 C 0.06 1.16 5.32 86.31 0.46 1.62 16 31 H 0.07 0.78 6.34 -2.38 -0.02 0.76 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.15 1.14 8.04 -2.91 -0.02 1.11 16 35 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.13 2.56 7.72 -2.91 -0.02 2.54 16 38 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.08 1.59 6.05 -2.39 -0.01 1.58 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.71 8.07 -2.39 -0.02 1.70 16 42 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 43 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.89 6.26 -2.39 -0.01 1.87 16 49 H 0.10 1.55 6.14 -2.39 -0.01 1.53 16 50 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -64.55 404.68 2.96 -61.59 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.93 Total: 9.90 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.92 Total: -7.51 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -6.69 Total: -106.89 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.55 2.96 -61.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091689750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.395 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds