Wall clock time and date at job start Tue Mar 31 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46710 * 2 1 4 4 C 1.50695 * 109.47387 * 239.99943 * 2 1 3 5 5 C 1.38267 * 119.98362 * 19.98573 * 4 2 1 6 6 C 1.38226 * 120.04947 * 180.02562 * 5 4 2 7 7 C 1.38220 * 120.02741 * 359.97364 * 6 5 4 8 8 C 1.38434 * 119.97245 * 0.02562 * 7 6 5 9 9 F 1.35097 * 120.02736 * 179.97438 * 8 7 6 10 10 C 1.38168 * 119.98962 * 200.00497 * 4 2 1 11 11 N 1.46896 * 109.46998 * 119.99788 * 2 1 3 12 12 C 1.46956 * 111.00087 * 55.23419 * 11 2 1 13 13 C 1.53052 * 109.36597 * 176.80799 * 12 11 2 14 14 N 1.46956 * 109.36405 * 58.40063 * 13 12 11 15 15 C 1.46897 * 110.99894 * 176.80918 * 14 13 12 16 16 C 1.53006 * 109.47253 * 199.22793 * 15 14 13 17 17 H 1.09002 * 109.46671 * 305.28278 * 16 15 14 18 18 C 1.47199 * 109.46863 * 65.28149 * 16 15 14 19 19 N 7.07623 * 68.96957 * 114.26274 * 2 1 3 20 20 C 1.52997 * 109.47462 * 185.28562 * 16 15 14 21 21 C 1.50693 * 109.47355 * 175.00215 * 20 16 15 22 22 H 1.08005 * 119.99979 * 359.97438 * 21 20 16 23 23 C 1.37876 * 120.00242 * 180.02562 * 21 20 16 24 24 N 1.31516 * 120.00090 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47256 * 59.99718 * 25 23 21 27 27 H 1.48507 * 109.47139 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46947 * 299.99425 * 25 23 21 29 29 C 1.46956 * 110.88033 * 300.68097 * 14 13 12 30 30 C 1.46956 * 111.00268 * 291.43220 * 11 2 1 31 31 H 1.08991 * 109.47311 * 60.00162 * 1 2 3 32 32 H 1.09003 * 109.46710 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47016 * 299.99579 * 1 2 3 34 34 H 1.08000 * 119.97759 * 359.97438 * 5 4 2 35 35 H 1.08007 * 119.98741 * 179.97438 * 6 5 4 36 36 H 1.08001 * 120.01311 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.01207 * 359.72227 * 10 4 2 38 38 H 1.08998 * 109.49185 * 296.77411 * 12 11 2 39 39 H 1.09003 * 109.49219 * 56.84077 * 12 11 2 40 40 H 1.08996 * 109.49118 * 298.43132 * 13 12 11 41 41 H 1.09002 * 109.49148 * 178.36710 * 13 12 11 42 42 H 1.08994 * 109.47678 * 319.23260 * 15 14 13 43 43 H 1.09003 * 109.47071 * 79.23257 * 15 14 13 44 44 H 1.09001 * 109.47136 * 295.00167 * 20 16 15 45 45 H 1.09002 * 109.47373 * 54.99772 * 20 16 15 46 46 H 0.96997 * 120.00475 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.48944 * 299.34928 * 29 14 13 48 48 H 1.09000 * 109.48571 * 179.29095 * 29 14 13 49 49 H 1.08997 * 109.49130 * 303.15682 * 30 11 2 50 50 H 1.08996 * 109.48824 * 63.22736 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.2017 -0.8692 -2.3242 6 6 1.6609 -1.5211 -3.4533 7 6 2.9515 -2.0144 -3.4903 8 6 3.7842 -1.8559 -2.3958 9 9 5.0457 -2.3381 -2.4305 10 6 3.3228 -1.2030 -1.2649 11 7 2.0196 -0.6924 1.1994 12 6 1.4576 -2.0471 1.2918 13 6 2.0522 -2.7614 2.5079 14 7 1.7551 -1.9873 3.7211 15 6 2.2447 -2.6798 4.9205 16 6 1.5286 -2.1292 6.1555 17 1 1.6505 -1.0467 6.1936 18 6 0.0961 -2.4594 6.0798 19 7 -1.0094 -2.7141 6.0215 20 6 2.1304 -2.7548 7.4153 21 6 1.5107 -2.1231 8.6351 22 1 0.7628 -1.3521 8.5230 23 6 1.8994 -2.5286 9.8943 24 7 2.8106 -3.4671 10.0309 25 14 1.1318 -1.7450 11.4062 26 1 -0.3352 -1.9749 11.3922 27 1 1.7167 -2.3515 12.6291 28 1 1.4042 -0.2852 11.3995 29 6 2.3171 -0.6326 3.6287 30 6 1.7226 0.0817 2.4127 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 0.1929 -0.4845 -2.2961 35 1 1.0110 -1.6450 -4.3070 36 1 3.3100 -2.5241 -4.3724 37 1 3.9729 -1.0752 -0.4120 38 1 0.3748 -1.9850 1.4001 39 1 1.7016 -2.6046 0.3874 40 1 3.1319 -2.8478 2.3869 41 1 1.6150 -3.7561 2.5951 42 1 2.0451 -3.7475 4.8306 43 1 3.3180 -2.5181 5.0207 44 1 1.9306 -3.8264 7.4199 45 1 3.2072 -2.5861 7.4261 46 1 3.0837 -3.7526 10.9167 47 1 3.3999 -0.6947 3.5206 48 1 2.0732 -0.0753 4.5332 49 1 2.1597 1.0764 2.3256 50 1 0.6428 0.1680 2.5337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091689751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:53 Heat of formation + Delta-G solvation = 13.597235 kcal Electronic energy + Delta-G solvation = -29909.064486 eV Core-core repulsion = 25850.491594 eV Total energy + Delta-G solvation = -4058.572892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.11221 -40.42442 -38.93374 -37.08096 -35.50640 -33.69791 -32.57522 -31.43054 -31.13746 -30.79720 -29.17690 -27.41741 -25.70418 -24.13660 -23.64809 -22.88730 -22.42401 -21.66487 -20.91978 -19.39892 -17.66391 -16.89112 -16.65549 -16.49219 -16.41829 -16.09198 -15.76658 -15.41474 -15.06360 -14.83707 -14.66695 -14.47523 -14.25267 -14.06609 -13.78402 -13.51101 -13.21349 -12.94362 -12.80860 -12.48448 -12.40702 -12.26872 -12.21142 -11.96406 -11.88085 -11.75105 -11.53902 -11.30723 -11.18727 -11.08892 -11.02200 -10.91018 -10.81352 -10.62014 -10.50575 -10.13694 -9.52405 -9.23908 -9.23201 -8.98659 -8.55788 -8.45131 -8.17727 -6.09256 -4.12466 0.82099 0.91650 3.23086 3.30998 3.35362 3.38943 3.63889 3.73906 3.84717 3.91544 3.98611 4.27227 4.41438 4.50941 4.68846 4.71617 4.82635 4.88153 4.89791 4.93118 5.05893 5.10814 5.15729 5.22496 5.26093 5.28715 5.35884 5.46233 5.53370 5.56927 5.66258 5.67201 5.73633 5.77158 5.81629 5.85594 5.89054 5.94180 5.98416 6.02147 6.09085 6.16692 6.36727 6.50957 6.58933 6.80850 6.82462 7.17544 7.19308 7.43126 7.53501 7.85710 8.23625 8.60191 8.92042 9.52865 11.01581 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.002062 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.262176 B =13575.530917 C =14145.295538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.119 3.881 3 H 0.097 0.903 4 C -0.047 4.047 5 C -0.131 4.131 6 C -0.094 4.094 7 C -0.159 4.159 8 C 0.094 3.906 9 F -0.141 7.141 10 C -0.126 4.126 11 N -0.529 5.529 12 C 0.055 3.945 13 C 0.059 3.941 14 N -0.543 5.543 15 C 0.063 3.937 16 C 0.013 3.987 17 H 0.099 0.901 18 C 0.258 3.742 19 N -0.483 5.483 20 C 0.031 3.969 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.062 3.938 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.275 1.275 29 C 0.055 3.945 30 C 0.056 3.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.037 0.963 46 H 0.263 0.737 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 6.820 -27.943 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.011 3.989 3 H 0.115 0.885 4 C -0.048 4.048 5 C -0.149 4.149 6 C -0.112 4.112 7 C -0.178 4.178 8 C 0.074 3.926 9 F -0.120 7.120 10 C -0.145 4.145 11 N -0.253 5.253 12 C -0.073 4.073 13 C -0.069 4.069 14 N -0.268 5.268 15 C -0.065 4.065 16 C -0.009 4.009 17 H 0.116 0.884 18 C -0.059 4.059 19 N -0.160 5.160 20 C -0.007 4.007 21 C -0.564 4.564 22 H 0.074 0.926 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.201 1.201 29 C -0.073 4.073 30 C -0.072 4.072 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.097 0.903 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.110 6.311 -27.879 28.585 hybrid contribution 0.273 0.321 0.934 1.024 sum 0.383 6.632 -26.946 27.752 Atomic orbital electron populations 1.22538 0.96452 1.03016 1.02674 1.20546 0.93097 0.97571 0.87687 0.88499 1.19644 0.92966 0.97209 0.94944 1.21244 1.00296 1.00261 0.93117 1.20964 0.94801 0.97118 0.98301 1.21157 0.94801 1.03496 0.98343 1.17779 0.80050 0.98940 0.95797 1.91506 1.37504 1.86065 1.96899 1.21082 0.97009 0.99002 0.97427 1.62382 1.58442 1.02804 1.01716 1.22198 0.97912 0.89217 0.97945 1.22124 0.98998 0.96797 0.89026 1.62171 1.59601 1.02655 1.02324 1.22219 0.97636 0.98595 0.88097 1.19207 0.82484 1.02165 0.97026 0.88365 1.28876 0.94674 0.92046 0.90269 1.80974 1.13243 1.10259 1.11527 1.19166 0.96595 0.96527 0.88430 1.21095 1.23044 1.21538 0.90733 0.92594 1.24953 0.94940 0.94955 0.99127 1.69926 1.30494 1.29141 1.23469 0.86656 0.79668 0.79617 0.82148 1.20240 1.21203 1.20062 1.22212 0.97351 0.90044 0.97742 1.22200 0.99650 0.96559 0.88752 0.91648 0.91611 0.91662 0.85109 0.85184 0.85068 0.83781 0.93406 0.90606 0.93985 0.90443 0.90443 0.92506 0.95640 0.94478 0.92744 0.93712 0.89581 0.90315 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 7.43 37.16 0.28 -1.07 16 2 C 0.12 0.92 2.72 -68.87 -0.19 0.73 16 3 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 4 C -0.05 -0.38 4.43 -104.64 -0.46 -0.84 16 5 C -0.13 -0.90 9.12 -39.58 -0.36 -1.26 16 6 C -0.09 -0.61 10.04 -39.59 -0.40 -1.01 16 7 C -0.16 -1.22 10.03 -39.52 -0.40 -1.62 16 8 C 0.09 0.88 7.30 -39.42 -0.29 0.59 16 9 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 10 C -0.13 -1.15 8.79 -39.52 -0.35 -1.50 16 11 N -0.53 -4.89 3.94 -227.88 -0.90 -5.79 16 12 C 0.06 0.56 4.73 -3.77 -0.02 0.54 16 13 C 0.06 0.68 5.57 -3.77 -0.02 0.65 16 14 N -0.54 -7.09 4.35 -234.47 -1.02 -8.11 16 15 C 0.06 0.93 4.36 -3.82 -0.02 0.91 16 16 C 0.01 0.24 2.26 -93.41 -0.21 0.03 16 17 H 0.10 1.68 6.71 -51.93 -0.35 1.34 16 18 C 0.26 5.37 13.68 -20.76 -0.28 5.09 16 19 N -0.48 -10.95 18.54 42.15 0.78 -10.17 16 20 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 21 C -0.53 -13.95 8.60 -34.44 -0.30 -14.24 16 22 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 25 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 C 0.05 0.62 5.43 -3.77 -0.02 0.60 16 30 C 0.06 0.55 5.31 -3.77 -0.02 0.53 16 31 H 0.06 0.37 6.69 -51.93 -0.35 0.02 16 32 H 0.06 0.53 6.41 -51.93 -0.33 0.20 16 33 H 0.06 0.51 6.71 -51.93 -0.35 0.17 16 34 H 0.13 0.70 5.98 -52.49 -0.31 0.39 16 35 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.14 1.38 7.72 -52.49 -0.41 0.98 16 38 H 0.05 0.54 6.42 -51.93 -0.33 0.20 16 39 H 0.08 0.75 6.81 -51.93 -0.35 0.40 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 42 H 0.08 1.15 7.85 -51.93 -0.41 0.75 16 43 H 0.06 0.78 8.00 -51.93 -0.42 0.37 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.00 6.69 -51.93 -0.35 0.66 16 49 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 50 H 0.05 0.50 6.71 -51.93 -0.35 0.16 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -30.22 399.34 -10.26 -40.48 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.62 Total: -2.82 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.27 Total: -9.65 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.40 Total: -48.82 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.22 -10.26 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091689751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.076 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds