Wall clock time and date at job start Tue Mar 31 2020 04:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46811 * 269.99788 * 3 2 1 5 5 H 1.48505 * 109.47135 * 29.99529 * 3 2 1 6 6 H 1.48494 * 109.47051 * 149.99622 * 3 2 1 7 7 C 1.38811 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99658 * 169.71132 * 7 2 1 9 9 N 1.36928 * 120.00175 * 349.98234 * 7 2 1 10 10 C 1.46966 * 120.59550 * 147.37629 * 9 7 2 11 11 C 1.53815 * 108.39996 * 124.75606 * 10 9 7 12 12 N 1.46970 * 108.57676 * 49.63722 * 11 10 9 13 13 C 1.34776 * 120.58884 * 124.62127 * 12 11 10 14 14 O 1.21603 * 119.99918 * 184.88574 * 13 12 11 15 15 N 1.34766 * 120.00609 * 4.89399 * 13 12 11 16 16 C 1.40198 * 120.00633 * 175.49464 * 15 13 12 17 17 C 1.38848 * 120.50738 * 33.10792 * 16 15 13 18 18 C 1.38824 * 118.44677 * 179.78179 * 17 16 15 19 19 C 1.38030 * 119.37726 * 0.47789 * 18 17 16 20 20 N 1.32022 * 120.99014 * 359.76777 * 19 18 17 21 21 C 1.32281 * 121.69226 * 0.02562 * 20 19 18 22 22 N 1.39209 * 119.74195 * 180.02562 * 21 20 19 23 23 C 1.48531 * 110.99572 * 248.67356 * 22 21 20 24 24 C 1.54939 * 103.22671 * 159.71892 * 23 22 21 25 25 C 1.54595 * 102.92279 * 322.58786 * 24 23 22 26 26 C 1.47902 * 111.00155 * 6.07017 * 22 21 20 27 27 C 1.46964 * 118.81516 * 304.64865 * 12 11 10 28 28 C 1.46969 * 120.59643 * 327.65213 * 9 7 2 29 29 H 0.96997 * 120.00429 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.60698 * 244.53965 * 10 9 7 31 31 H 1.08996 * 109.60924 * 5.05461 * 10 9 7 32 32 H 1.08998 * 109.74397 * 289.84974 * 11 10 9 33 33 H 1.08996 * 109.67450 * 169.38635 * 11 10 9 34 34 H 0.97006 * 120.00171 * 355.49841 * 15 13 12 35 35 H 1.08001 * 120.77936 * 0.02767 * 17 16 15 36 36 H 1.07999 * 120.31161 * 180.22262 * 18 17 16 37 37 H 1.08007 * 119.50026 * 179.74170 * 19 18 17 38 38 H 1.09001 * 110.67377 * 278.15504 * 23 22 21 39 39 H 1.09000 * 110.67045 * 41.29153 * 23 22 21 40 40 H 1.08993 * 110.72775 * 204.22690 * 24 23 22 41 41 H 1.09004 * 110.71937 * 80.94630 * 24 23 22 42 42 H 1.08994 * 110.31121 * 263.03817 * 25 24 23 43 43 H 1.09001 * 110.30682 * 140.87103 * 25 24 23 44 44 H 1.09000 * 109.91539 * 333.51211 * 26 22 21 45 45 H 1.09000 * 109.91405 * 94.80554 * 26 22 21 46 46 H 1.09002 * 109.60656 * 295.48090 * 27 12 11 47 47 H 1.08997 * 109.60977 * 174.96979 * 27 12 11 48 48 H 1.09008 * 109.60554 * 354.95417 * 28 9 7 49 49 H 1.08998 * 109.60838 * 115.45810 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0772 -1.2096 -0.1665 9 7 1.3413 -2.3789 0.2073 10 6 1.7888 -3.6181 -0.4437 11 6 2.0224 -4.6808 0.6435 12 7 0.8404 -4.7259 1.5157 13 6 0.1814 -5.8839 1.7185 14 8 -0.8456 -5.8932 2.3696 15 7 0.6606 -7.0318 1.1998 16 6 0.0286 -8.2494 1.4888 17 6 -1.3462 -8.3030 1.6758 18 6 -1.9281 -9.5320 1.9554 19 6 -1.1294 -10.6538 2.0486 20 7 0.1765 -10.5751 1.8714 21 6 0.7729 -9.4262 1.5992 22 7 2.1529 -9.3900 1.4195 23 6 2.8156 -8.6624 2.5319 24 6 4.2800 -9.1633 2.4606 25 6 4.1177 -10.6534 2.0819 26 6 2.7251 -10.7538 1.4322 27 6 0.3894 -3.4855 2.1624 28 6 0.1593 -2.4241 1.0796 29 1 -0.4850 0.8400 -0.0004 30 1 1.0231 -3.9636 -1.1382 31 1 2.7182 -3.4333 -0.9823 32 1 2.9015 -4.4183 1.2321 33 1 2.1712 -5.6552 0.1784 34 1 1.4430 -7.0156 0.6266 35 1 -1.9493 -7.4101 1.6015 36 1 -2.9952 -9.6089 2.1028 37 1 -1.5795 -11.6103 2.2702 38 1 2.7690 -7.5856 2.3692 39 1 2.3645 -8.9279 3.4880 40 1 4.7698 -9.0626 3.4290 41 1 4.8337 -8.6275 1.6895 42 1 4.1648 -11.2777 2.9740 43 1 4.8891 -10.9492 1.3709 44 1 2.0892 -11.4178 2.0178 45 1 2.8171 -11.1274 0.4124 46 1 1.1523 -3.1380 2.8591 47 1 -0.5419 -3.6698 2.6978 48 1 0.0122 -1.4504 1.5471 49 1 -0.7198 -2.6865 0.4910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864094579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:29 Heat of formation + Delta-G solvation = 72.745395 kcal Electronic energy + Delta-G solvation = -31271.732411 eV Core-core repulsion = 27235.644338 eV Total energy + Delta-G solvation = -4036.088073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26768 -39.84002 -38.35387 -37.04762 -35.00080 -34.00492 -33.01392 -31.42692 -31.04422 -30.12513 -29.14951 -28.62941 -26.84444 -24.23771 -23.74005 -23.27970 -22.60432 -21.41867 -21.03024 -20.65201 -19.29003 -18.55470 -17.62321 -17.06711 -16.66209 -16.26455 -15.77774 -15.43044 -15.15087 -14.80863 -14.70828 -14.51397 -13.94154 -13.82994 -13.62761 -13.52582 -13.38476 -13.27606 -13.15717 -12.87857 -12.54211 -12.30978 -12.25764 -11.80058 -11.64725 -11.41749 -11.19552 -10.89398 -10.88236 -10.78486 -10.70949 -10.63988 -10.26875 -10.20389 -10.04233 -9.89608 -9.78579 -9.56564 -8.90941 -8.63090 -8.37420 -7.87359 -6.69146 -5.87592 -3.39581 1.01284 1.26412 2.74106 3.26774 3.31829 3.38760 3.39950 3.40959 3.82202 3.98220 4.24510 4.38990 4.40136 4.64299 4.70417 4.89355 5.03098 5.07737 5.10896 5.17409 5.22992 5.31209 5.34077 5.50987 5.56597 5.59510 5.63465 5.68116 5.74309 5.76422 5.83143 5.87112 5.97473 6.03313 6.12949 6.24433 6.29192 6.34992 6.40853 6.45680 6.61832 6.64765 6.75311 7.05188 7.14088 7.24400 7.56410 7.69063 7.85238 8.07117 8.35999 8.70463 9.09897 9.70080 10.28705 11.19334 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.002804 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.886163 B = 9983.624071 C =11230.149894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.092 3.908 12 N -0.606 5.606 13 C 0.701 3.299 14 O -0.587 6.587 15 N -0.678 5.678 16 C 0.130 3.870 17 C -0.068 4.068 18 C -0.171 4.171 19 C 0.090 3.910 20 N -0.500 5.500 21 C 0.265 3.735 22 N -0.463 5.463 23 C 0.043 3.957 24 C -0.123 4.123 25 C -0.132 4.132 26 C 0.036 3.964 27 C 0.103 3.897 28 C 0.159 3.841 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.411 0.589 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -21.151 4.399 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.004 3.996 11 C -0.033 4.033 12 N -0.342 5.342 13 C 0.404 3.596 14 O -0.465 6.465 15 N -0.329 5.329 16 C 0.029 3.971 17 C -0.096 4.096 18 C -0.192 4.192 19 C -0.068 4.068 20 N -0.213 5.213 21 C 0.030 3.970 22 N -0.183 5.183 23 C -0.083 4.083 24 C -0.161 4.161 25 C -0.170 4.170 26 C -0.091 4.091 27 C -0.021 4.021 28 C 0.033 3.967 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.120 0.880 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.064 -21.349 4.431 22.179 hybrid contribution 0.069 1.264 0.125 1.272 sum 4.133 -20.085 4.556 21.006 Atomic orbital electron populations 1.69945 1.05339 1.25793 1.53503 1.25232 0.95426 0.98584 0.99984 0.86242 0.79070 0.83321 0.77765 1.21279 1.21495 1.20366 1.19160 0.90762 0.83630 1.45340 0.91630 1.43942 1.32320 1.03969 1.51060 1.21356 0.98626 0.87495 0.92096 1.22411 0.87640 0.99541 0.93689 1.47314 1.30263 1.07186 1.49406 1.15894 0.83434 0.80294 0.80011 1.90851 1.24227 1.85193 1.46258 1.42798 1.33884 1.03653 1.52538 1.17984 0.91744 0.84884 1.02485 1.21839 0.92845 0.99259 0.95706 1.21994 1.01538 0.92712 1.02957 1.22395 0.88376 0.98667 0.97383 1.67462 1.12808 1.26339 1.14655 1.19646 0.90849 0.88727 0.97741 1.62136 0.99878 1.15681 1.40566 1.23290 0.93877 0.99473 0.91707 1.22512 0.95503 0.95820 1.02287 1.22435 0.97058 0.96737 1.00757 1.22857 0.94593 0.89421 1.02233 1.22499 0.99664 0.82995 0.96904 1.21228 0.88560 0.97096 0.89851 0.93358 0.95838 0.91375 0.91290 0.91988 0.74870 0.82508 0.84626 0.82825 0.89442 0.92955 0.90584 0.90238 0.91371 0.90807 0.89863 0.90254 0.92177 0.89947 0.88035 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.05 55.49 0.61 -24.73 16 2 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 3 Si 0.91 20.88 29.57 -169.99 -5.03 15.85 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.26 -6.74 9.57 -15.06 -0.14 -6.89 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 9 N -0.59 -14.02 2.95 -171.77 -0.51 -14.52 16 10 C 0.13 2.54 6.70 -3.36 -0.02 2.52 16 11 C 0.09 1.44 6.58 -3.36 -0.02 1.42 16 12 N -0.61 -10.66 2.95 -177.94 -0.52 -11.19 16 13 C 0.70 12.21 8.17 -86.93 -0.71 11.50 16 14 O -0.59 -11.72 13.13 5.27 0.07 -11.65 16 15 N -0.68 -9.76 3.96 -13.97 -0.06 -9.82 16 16 C 0.13 1.86 6.18 -83.26 -0.51 1.35 16 17 C -0.07 -0.96 8.82 -39.14 -0.35 -1.31 16 18 C -0.17 -1.92 10.10 -39.44 -0.40 -2.32 16 19 C 0.09 0.97 11.17 -17.55 -0.20 0.78 16 20 N -0.50 -6.29 8.12 -12.26 -0.10 -6.39 16 21 C 0.26 3.49 6.12 -154.71 -0.95 2.54 16 22 N -0.46 -5.30 4.85 -169.02 -0.82 -6.12 16 23 C 0.04 0.45 5.92 -1.90 -0.01 0.44 16 24 C -0.12 -1.00 7.06 -24.87 -0.18 -1.17 16 25 C -0.13 -1.02 6.93 -25.37 -0.18 -1.19 16 26 C 0.04 0.35 6.42 -2.75 -0.02 0.34 16 27 C 0.10 2.01 6.60 -3.60 -0.02 1.99 16 28 C 0.16 3.70 5.45 -3.60 -0.02 3.68 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.78 5.61 -51.93 -0.29 0.49 16 34 H 0.41 5.29 5.67 -40.82 -0.23 5.05 16 35 H 0.16 2.48 6.18 -52.49 -0.32 2.16 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.09 0.98 7.05 -51.93 -0.37 0.61 16 39 H 0.05 0.61 8.00 -51.93 -0.42 0.19 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.90 6.41 -51.93 -0.33 0.57 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.08 1.62 6.99 -51.93 -0.36 1.25 16 48 H 0.10 2.61 6.07 -51.92 -0.32 2.30 16 49 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.64 380.18 -11.68 -42.32 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.25 Total: 6.77 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: -3.81 Total: 13.76 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.39 Total: -72.77 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.64 -11.68 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864094579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.062 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds