Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31226 * 126.68717 * 2 1 4 4 N 1.40105 * 107.19116 * 180.02562 * 3 2 1 5 5 C 1.40134 * 125.55806 * 180.02562 * 4 3 2 6 6 C 1.38861 * 120.06951 * 359.72085 * 5 4 3 7 7 C 1.38115 * 119.92792 * 179.70706 * 6 5 4 8 8 C 1.38290 * 120.07034 * 0.58840 * 7 6 5 9 9 C 1.38284 * 120.13465 * 359.68953 * 8 7 6 10 10 C 1.38108 * 120.07009 * 0.02562 * 9 8 7 11 11 N 1.28709 * 108.88515 * 359.97438 * 4 3 2 12 12 C 1.32112 * 109.40588 * 0.02562 * 11 4 3 13 13 C 1.47616 * 126.05075 * 180.02562 * 12 11 4 14 14 O 1.21493 * 119.99977 * 179.97438 * 13 12 11 15 15 O 1.34757 * 120.00291 * 359.95026 * 13 12 11 16 16 C 1.35706 * 117.00050 * 175.27890 * 15 13 12 17 17 C 1.39304 * 119.81578 * 264.25481 * 16 15 13 18 18 C 1.36436 * 120.18247 * 179.72096 * 17 16 15 19 19 C 1.40837 * 119.81063 * 0.57248 * 18 17 16 20 20 C 1.41208 * 120.17863 * 179.68044 * 19 18 17 21 21 H 1.07999 * 119.99906 * 24.99961 * 20 19 18 22 22 C 1.39915 * 119.99721 * 205.00161 * 20 19 18 23 23 N 1.30859 * 120.00401 * 17.34190 * 22 20 19 24 24 Si 1.86808 * 119.99917 * 197.34496 * 22 20 19 25 25 H 1.48495 * 109.46813 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47281 * 119.99974 * 24 22 20 27 27 H 1.48507 * 109.46759 * 239.99776 * 24 22 20 28 28 C 1.40834 * 119.63826 * 359.69965 * 19 18 17 29 29 C 1.36431 * 119.81038 * 0.02562 * 28 19 18 30 30 H 1.08998 * 109.47210 * 89.97534 * 1 2 3 31 31 H 1.09001 * 109.47170 * 209.97668 * 1 2 3 32 32 H 1.09006 * 109.47099 * 329.97336 * 1 2 3 33 33 H 1.07991 * 120.03358 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.96488 * 180.32307 * 7 6 5 35 35 H 1.07992 * 119.93002 * 179.70236 * 8 7 6 36 36 H 1.08009 * 119.96192 * 180.02562 * 9 8 7 37 37 H 1.08008 * 120.03242 * 180.02562 * 10 9 8 38 38 H 1.08008 * 119.90771 * 359.97438 * 17 16 15 39 39 H 1.08003 * 120.09588 * 180.25231 * 18 17 16 40 40 H 0.96996 * 120.00236 * 180.02562 * 23 22 20 41 41 H 1.08003 * 120.08976 * 179.97438 * 28 19 18 42 42 H 1.08002 * 119.90806 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2910 1.0523 0.0000 4 7 3.6117 0.5847 -0.0006 5 6 4.7604 1.3874 -0.0003 6 6 4.6424 2.7710 -0.0052 7 6 5.7764 3.5593 0.0013 8 6 7.0285 2.9722 0.0003 9 6 7.1493 1.5947 -0.0007 10 6 6.0191 0.8009 -0.0012 11 7 3.5980 -0.7023 -0.0004 12 6 2.3473 -1.1279 -0.0002 13 6 1.9094 -2.5376 0.0005 14 8 0.7244 -2.8057 0.0011 15 8 2.8240 -3.5273 0.0002 16 6 2.3572 -4.7976 0.1005 17 6 2.3059 -5.4204 1.3455 18 6 1.8327 -6.6953 1.4557 19 6 1.4066 -7.3860 0.3046 20 6 0.9218 -8.7081 0.4089 21 1 0.4973 -9.0558 1.3391 22 6 0.9914 -9.5676 -0.6930 23 7 1.7891 -9.2878 -1.6918 24 14 -0.0547 -11.1147 -0.7383 25 1 -0.8643 -11.2012 0.5035 26 1 -0.9576 -11.0675 -1.9163 27 1 0.8271 -12.3056 -0.8378 28 6 1.4672 -6.7510 -0.9510 29 6 1.9378 -5.4737 -1.0430 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8898 0.5143 33 1 3.6649 3.2301 -0.0096 34 1 5.6852 4.6355 0.0028 35 1 7.9137 3.5908 0.0005 36 1 8.1285 1.1390 -0.0010 37 1 6.1141 -0.2750 -0.0015 38 1 2.6379 -4.8911 2.2265 39 1 1.7897 -7.1754 2.4222 40 1 1.8370 -9.8835 -2.4558 41 1 1.1428 -7.2739 -1.8385 42 1 1.9853 -4.9854 -2.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000092410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = 83.549232 kcal Electronic energy + Delta-G solvation = -28273.024686 eV Core-core repulsion = 24186.132125 eV Total energy + Delta-G solvation = -4086.892561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.89721 -40.18115 -39.48277 -37.47673 -36.04697 -34.58365 -33.58239 -32.88311 -31.43395 -30.57476 -29.74612 -29.35283 -28.26377 -25.98115 -24.76422 -23.23301 -22.51805 -21.57368 -21.23344 -20.76818 -20.00877 -18.57951 -17.49135 -17.45820 -16.85494 -16.73307 -16.51769 -15.58340 -15.26212 -15.10024 -14.79191 -14.16201 -13.98317 -13.87904 -13.76682 -13.69268 -13.30471 -13.13331 -12.93474 -12.80587 -12.22380 -12.12693 -11.90117 -11.75612 -11.67705 -11.54318 -11.28304 -11.12329 -11.04616 -10.84674 -10.58299 -10.45603 -10.37532 -10.18505 -9.91340 -9.46138 -9.39725 -9.19483 -8.58552 -7.70278 -7.43451 -6.93223 -4.49750 0.22989 0.89064 1.44911 1.61331 1.65576 2.37037 2.94233 2.98192 3.01506 3.06652 3.16750 3.31034 3.35264 3.64596 3.82322 4.37752 4.44845 4.49172 4.49431 4.67063 4.89540 4.97445 5.08477 5.19744 5.36232 5.49397 5.50990 5.55606 5.62951 5.69444 5.87220 5.90362 6.03330 6.11084 6.13775 6.18519 6.20439 6.60561 6.75901 6.88585 6.91457 7.12092 7.15376 7.44503 7.51245 7.64819 7.84715 7.88570 8.07533 8.38508 8.55485 8.71086 8.86781 10.00617 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.002017 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.490585 B =13875.934041 C =14676.205441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.110 3.890 3 N -0.284 5.284 4 N -0.164 5.164 5 C 0.157 3.843 6 C -0.108 4.108 7 C -0.102 4.102 8 C -0.118 4.118 9 C -0.098 4.098 10 C -0.110 4.110 11 N -0.173 5.173 12 C -0.031 4.031 13 C 0.530 3.470 14 O -0.479 6.479 15 O -0.261 6.261 16 C -0.078 4.078 17 C -0.073 4.073 18 C -0.219 4.219 19 C 0.118 3.882 20 C -0.448 4.448 21 H 0.084 0.916 22 C 0.074 3.926 23 N -0.781 5.781 24 Si 0.912 3.088 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.160 4.160 29 C -0.083 4.083 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.284 0.716 41 H 0.124 0.876 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 20.893 1.121 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 N -0.113 5.113 4 N -0.056 5.056 5 C 0.066 3.934 6 C -0.129 4.129 7 C -0.121 4.121 8 C -0.137 4.137 9 C -0.117 4.117 10 C -0.131 4.131 11 N -0.018 5.018 12 C -0.196 4.196 13 C 0.372 3.628 14 O -0.363 6.363 15 O -0.174 6.174 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.239 4.239 19 C 0.115 3.885 20 C -0.476 4.476 21 H 0.102 0.898 22 C -0.146 4.146 23 N -0.405 5.405 24 Si 0.736 3.264 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.179 4.179 29 C -0.102 4.102 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.142 0.858 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.714 21.439 0.880 22.483 hybrid contribution -1.013 -1.260 -0.176 1.627 sum 5.701 20.179 0.704 20.981 Atomic orbital electron populations 1.20464 0.83353 1.05120 1.04604 1.23624 0.98906 0.88048 0.95544 1.77967 0.87239 1.22379 1.23723 1.48187 1.04804 1.00977 1.51582 1.17416 0.81819 0.89261 1.04863 1.20933 1.00757 0.90429 1.00783 1.21056 0.91500 1.00158 0.99337 1.21348 0.97859 0.95038 0.99436 1.21090 0.98225 0.93532 0.98858 1.21089 0.89753 1.01943 1.00275 1.73951 1.22565 0.95037 1.10237 1.22025 0.88267 0.94505 1.14758 1.20164 0.85007 0.83951 0.73696 1.90823 1.17393 1.83362 1.44734 1.84796 1.36359 1.14384 1.81813 1.17993 1.18935 0.80755 0.94286 1.20291 0.98717 0.95920 0.94233 1.20575 1.09127 0.95835 0.98341 1.17742 0.87141 0.92563 0.91071 1.19708 1.34047 0.95650 0.98193 0.89832 1.26026 0.93795 1.00252 0.94531 1.69836 1.27569 1.36390 1.06749 0.86190 0.80290 0.80178 0.79732 1.18171 1.19487 1.19805 1.20944 1.04791 0.93241 0.98926 1.20500 0.98296 0.95907 0.95491 0.89066 0.87723 0.90008 0.84135 0.84684 0.85101 0.84491 0.83758 0.88692 0.88048 0.90485 0.85807 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.92 36.01 0.36 -0.52 16 2 C 0.11 1.62 7.34 -81.94 -0.60 1.02 16 3 N -0.28 -4.11 11.90 33.88 0.40 -3.71 16 4 N -0.16 -2.43 4.44 32.48 0.14 -2.29 16 5 C 0.16 1.89 6.74 -83.60 -0.56 1.33 16 6 C -0.11 -1.03 9.65 -39.40 -0.38 -1.41 16 7 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 8 C -0.12 -0.75 10.04 -39.55 -0.40 -1.15 16 9 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 10 C -0.11 -1.15 9.61 -39.40 -0.38 -1.53 16 11 N -0.17 -2.91 11.29 33.28 0.38 -2.54 16 12 C -0.03 -0.53 7.12 -83.01 -0.59 -1.12 16 13 C 0.53 10.69 7.90 34.56 0.27 10.96 16 14 O -0.48 -10.26 14.68 -19.26 -0.28 -10.54 16 15 O -0.26 -5.78 10.01 -24.24 -0.24 -6.02 16 16 C -0.08 -1.88 4.97 -38.79 -0.19 -2.08 16 17 C -0.07 -1.72 9.92 -39.83 -0.40 -2.12 16 18 C -0.22 -5.38 9.74 -39.25 -0.38 -5.76 16 19 C 0.12 3.10 5.57 -106.80 -0.60 2.51 16 20 C -0.45 -11.49 9.04 -37.83 -0.34 -11.83 16 21 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 22 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 23 N -0.78 -19.52 10.95 55.55 0.61 -18.91 16 24 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 25 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 28 C -0.16 -4.17 8.64 -39.25 -0.34 -4.51 16 29 C -0.08 -2.05 9.88 -39.84 -0.39 -2.45 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.33 6.58 -51.93 -0.34 0.99 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.14 1.28 7.67 -52.49 -0.40 0.88 16 34 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.14 1.60 7.67 -52.48 -0.40 1.19 16 38 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 39 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 41 H 0.12 3.28 6.17 -52.48 -0.32 2.95 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -30.22 374.43 -8.59 -38.81 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.40 Total: 5.86 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -5.81 Total: -19.20 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: 1.53 Total: -27.45 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.53 Total: -16.56 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.22 -8.59 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000092410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.357 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds