Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31226 * 126.68717 * 2 1 4 4 N 1.40105 * 107.19116 * 180.02562 * 3 2 1 5 5 C 1.40134 * 125.55806 * 180.02562 * 4 3 2 6 6 C 1.38861 * 120.06951 * 359.72085 * 5 4 3 7 7 C 1.38115 * 119.92792 * 179.70706 * 6 5 4 8 8 C 1.38290 * 120.07034 * 0.58840 * 7 6 5 9 9 C 1.38284 * 120.13465 * 359.68953 * 8 7 6 10 10 C 1.38108 * 120.07009 * 0.02562 * 9 8 7 11 11 N 1.28709 * 108.88515 * 359.97438 * 4 3 2 12 12 C 1.32112 * 109.40588 * 0.02562 * 11 4 3 13 13 C 1.47616 * 126.05075 * 180.02562 * 12 11 4 14 14 O 1.21493 * 119.99977 * 179.97438 * 13 12 11 15 15 O 1.34757 * 120.00291 * 359.95026 * 13 12 11 16 16 C 1.35706 * 117.00050 * 175.27890 * 15 13 12 17 17 C 1.39304 * 119.81578 * 264.25481 * 16 15 13 18 18 C 1.36436 * 120.18247 * 179.72096 * 17 16 15 19 19 C 1.40837 * 119.81063 * 0.57248 * 18 17 16 20 20 C 1.41208 * 120.17863 * 179.68044 * 19 18 17 21 21 H 1.07999 * 119.99906 * 24.99961 * 20 19 18 22 22 C 1.39915 * 119.99721 * 205.00161 * 20 19 18 23 23 N 1.30859 * 120.00401 * 17.34190 * 22 20 19 24 24 Si 1.86808 * 119.99917 * 197.34496 * 22 20 19 25 25 H 1.48495 * 109.46813 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47281 * 119.99974 * 24 22 20 27 27 H 1.48507 * 109.46759 * 239.99776 * 24 22 20 28 28 C 1.40834 * 119.63826 * 359.69965 * 19 18 17 29 29 C 1.36431 * 119.81038 * 0.02562 * 28 19 18 30 30 H 1.08998 * 109.47210 * 89.97534 * 1 2 3 31 31 H 1.09001 * 109.47170 * 209.97668 * 1 2 3 32 32 H 1.09006 * 109.47099 * 329.97336 * 1 2 3 33 33 H 1.07991 * 120.03358 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.96488 * 180.32307 * 7 6 5 35 35 H 1.07992 * 119.93002 * 179.70236 * 8 7 6 36 36 H 1.08009 * 119.96192 * 180.02562 * 9 8 7 37 37 H 1.08008 * 120.03242 * 180.02562 * 10 9 8 38 38 H 1.08008 * 119.90771 * 359.97438 * 17 16 15 39 39 H 1.08003 * 120.09588 * 180.25231 * 18 17 16 40 40 H 0.96996 * 120.00236 * 180.02562 * 23 22 20 41 41 H 1.08003 * 120.08976 * 179.97438 * 28 19 18 42 42 H 1.08002 * 119.90806 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2910 1.0523 0.0000 4 7 3.6117 0.5847 -0.0006 5 6 4.7604 1.3874 -0.0003 6 6 4.6424 2.7710 -0.0052 7 6 5.7764 3.5593 0.0013 8 6 7.0285 2.9722 0.0003 9 6 7.1493 1.5947 -0.0007 10 6 6.0191 0.8009 -0.0012 11 7 3.5980 -0.7023 -0.0004 12 6 2.3473 -1.1279 -0.0002 13 6 1.9094 -2.5376 0.0005 14 8 0.7244 -2.8057 0.0011 15 8 2.8240 -3.5273 0.0002 16 6 2.3572 -4.7976 0.1005 17 6 2.3059 -5.4204 1.3455 18 6 1.8327 -6.6953 1.4557 19 6 1.4066 -7.3860 0.3046 20 6 0.9218 -8.7081 0.4089 21 1 0.4973 -9.0558 1.3391 22 6 0.9914 -9.5676 -0.6930 23 7 1.7891 -9.2878 -1.6918 24 14 -0.0547 -11.1147 -0.7383 25 1 -0.8643 -11.2012 0.5035 26 1 -0.9576 -11.0675 -1.9163 27 1 0.8271 -12.3056 -0.8378 28 6 1.4672 -6.7510 -0.9510 29 6 1.9378 -5.4737 -1.0430 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8898 0.5143 33 1 3.6649 3.2301 -0.0096 34 1 5.6852 4.6355 0.0028 35 1 7.9137 3.5908 0.0005 36 1 8.1285 1.1390 -0.0010 37 1 6.1141 -0.2750 -0.0015 38 1 2.6379 -4.8911 2.2265 39 1 1.7897 -7.1754 2.4222 40 1 1.8370 -9.8835 -2.4558 41 1 1.1428 -7.2739 -1.8385 42 1 1.9853 -4.9854 -2.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000092410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = 69.227196 kcal Electronic energy + Delta-G solvation = -28273.645736 eV Core-core repulsion = 24186.132125 eV Total energy + Delta-G solvation = -4087.513611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.07456 -41.87161 -40.22377 -39.29370 -37.77888 -35.62434 -35.43430 -33.99776 -32.10797 -31.75724 -31.51566 -31.15925 -29.28516 -27.54453 -26.25537 -23.97091 -23.89715 -23.17473 -22.68233 -22.04165 -21.54354 -19.55140 -19.39135 -19.06448 -18.39864 -17.99333 -17.33235 -17.22060 -16.82015 -16.02505 -15.90387 -15.62878 -15.31880 -15.20163 -14.91903 -14.59611 -14.52364 -14.50909 -14.16675 -14.11347 -13.73978 -13.64941 -13.44136 -13.04467 -12.98827 -12.74424 -12.64655 -12.59132 -12.50673 -12.21766 -12.04087 -11.81682 -11.70603 -11.63807 -11.47621 -11.24054 -11.05901 -10.11123 -9.65787 -9.47132 -9.37713 -8.76311 -6.44668 -0.76791 0.20977 0.25138 0.42632 0.68294 0.68483 1.01178 1.38873 1.42641 1.55851 1.68650 1.82667 2.17711 2.37378 2.64709 2.66716 3.26604 3.56900 3.73547 3.77893 3.82185 4.05276 4.19324 4.22600 4.25257 4.28982 4.31252 4.45782 4.49388 4.62120 4.77860 4.86660 4.96619 5.00247 5.02379 5.09632 5.19696 5.23003 5.24614 5.33999 5.41907 5.43252 5.52162 5.76380 5.86480 5.89761 5.94791 6.13573 6.37852 6.49173 6.71891 6.78258 6.99822 8.20889 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.002017 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.490585 B =13875.934041 C =14676.205441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.112 3.888 3 N -0.284 5.284 4 N -0.149 5.149 5 C 0.109 3.891 6 C -0.110 4.110 7 C -0.095 4.095 8 C -0.101 4.101 9 C -0.098 4.098 10 C -0.124 4.124 11 N -0.187 5.187 12 C -0.062 4.062 13 C 0.535 3.465 14 O -0.497 6.497 15 O -0.270 6.270 16 C -0.081 4.081 17 C -0.077 4.077 18 C -0.228 4.228 19 C 0.089 3.911 20 C -0.476 4.476 21 H 0.088 0.912 22 C 0.033 3.967 23 N -0.812 5.812 24 Si 0.989 3.011 25 H -0.254 1.254 26 H -0.264 1.264 27 H -0.263 1.263 28 C -0.178 4.178 29 C -0.092 4.092 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.294 0.706 41 H 0.113 0.887 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 23.083 1.421 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 N -0.113 5.113 4 N -0.042 5.042 5 C 0.020 3.980 6 C -0.131 4.131 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.145 4.145 11 N -0.034 5.034 12 C -0.224 4.224 13 C 0.378 3.622 14 O -0.381 6.381 15 O -0.183 6.183 16 C -0.123 4.123 17 C -0.096 4.096 18 C -0.247 4.247 19 C 0.086 3.914 20 C -0.504 4.504 21 H 0.106 0.894 22 C -0.184 4.184 23 N -0.436 5.436 24 Si 0.809 3.191 25 H -0.177 1.177 26 H -0.188 1.188 27 H -0.188 1.188 28 C -0.198 4.198 29 C -0.110 4.110 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.187 0.813 35 H 0.187 0.813 36 H 0.179 0.821 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.689 23.646 1.185 24.893 hybrid contribution -1.057 -1.651 -0.279 1.980 sum 6.631 21.995 0.906 22.991 Atomic orbital electron populations 1.20581 0.81270 1.05765 1.05659 1.24038 1.00108 0.86940 0.94685 1.77953 0.87103 1.22063 1.24205 1.48559 1.05783 1.00546 1.49355 1.17961 0.81361 0.90183 1.08521 1.21135 1.02010 0.89438 1.00548 1.21500 0.90691 1.01635 0.97541 1.21846 0.99059 0.94711 0.96276 1.21444 0.98177 0.94220 0.97793 1.21177 0.90421 1.01678 1.01248 1.73881 1.22536 0.96346 1.10668 1.21698 0.89307 0.93363 1.18056 1.20326 0.84476 0.84500 0.72875 1.90802 1.17853 1.83788 1.45702 1.84737 1.37190 1.14077 1.82337 1.18091 1.18046 0.81816 0.94300 1.20550 0.98252 0.95798 0.94976 1.20804 1.09064 0.96214 0.98640 1.18103 0.88029 0.93544 0.91686 1.19992 1.35112 0.95945 0.99365 0.89353 1.26940 0.94415 1.03447 0.93581 1.69875 1.28381 1.37926 1.07423 0.85044 0.78363 0.75815 0.79857 1.17746 1.18834 1.18777 1.20908 1.06265 0.93812 0.98788 1.20644 0.98346 0.95719 0.96337 0.87693 0.89134 0.87157 0.84097 0.81286 0.81312 0.82053 0.85405 0.86367 0.86440 0.89502 0.86911 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 9.92 71.24 0.71 -0.96 16 2 C 0.11 3.34 7.34 43.24 0.32 3.66 16 3 N -0.28 -8.17 11.90 -46.71 -0.56 -8.72 16 4 N -0.15 -4.48 4.44 -51.14 -0.23 -4.71 16 5 C 0.11 2.60 6.74 38.11 0.26 2.85 16 6 C -0.11 -1.91 9.65 22.39 0.22 -1.70 16 7 C -0.10 -0.96 10.04 22.25 0.22 -0.74 16 8 C -0.10 -0.86 10.04 22.29 0.22 -0.63 16 9 C -0.10 -1.23 10.04 22.25 0.22 -1.01 16 10 C -0.12 -2.56 9.61 22.39 0.22 -2.34 16 11 N -0.19 -6.51 11.29 -48.64 -0.55 -7.06 16 12 C -0.06 -2.24 7.12 42.17 0.30 -1.94 16 13 C 0.54 22.38 7.90 70.30 0.56 22.94 16 14 O -0.50 -21.98 14.68 19.86 0.29 -21.69 16 15 O -0.27 -12.40 10.01 2.04 0.02 -12.38 16 16 C -0.08 -4.02 4.97 22.78 0.11 -3.90 16 17 C -0.08 -3.72 9.92 22.11 0.22 -3.50 16 18 C -0.23 -11.42 9.74 22.49 0.22 -11.20 16 19 C 0.09 4.86 5.57 -21.28 -0.12 4.74 16 20 C -0.48 -24.99 9.04 23.41 0.21 -24.78 16 21 H 0.09 4.39 7.90 -2.91 -0.02 4.36 16 22 C 0.03 1.62 5.14 85.24 0.44 2.06 16 23 N -0.81 -41.36 10.95 21.82 0.24 -41.12 16 24 Si 0.99 36.62 29.59 68.60 2.03 38.65 16 25 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 27 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 28 C -0.18 -9.72 8.64 22.48 0.19 -9.52 16 29 C -0.09 -4.72 9.88 22.10 0.22 -4.50 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 2.33 6.58 -2.39 -0.02 2.31 16 32 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.14 2.37 7.67 -2.92 -0.02 2.34 16 34 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 35 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 36 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.13 2.98 7.67 -2.91 -0.02 2.95 16 38 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 40 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 41 H 0.11 6.27 6.17 -2.91 -0.02 6.25 16 42 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -68.55 374.43 7.05 -61.49 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 1.07 Total: 26.02 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 4.73 Total: -30.48 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.09 Total: -61.61 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: 0.31 Total: -34.07 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -68.55 7.05 -61.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000092410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.721 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds