Wall clock time and date at job start Tue Mar 31 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33502 * 126.72850 * 2 1 4 4 N 1.20651 * 113.40189 * 180.02562 * 3 2 1 5 5 C 1.30873 * 112.10453 * 0.02562 * 4 3 2 6 6 C 1.48318 * 127.44542 * 180.02562 * 5 4 3 7 7 C 1.39374 * 120.12830 * 144.71999 * 6 5 4 8 8 C 1.38008 * 119.87532 * 179.78880 * 7 6 5 9 9 C 1.38325 * 120.12731 * 0.46839 * 8 7 6 10 10 C 1.38334 * 120.24848 * 359.78762 * 9 8 7 11 11 C 1.38014 * 120.12139 * 359.97438 * 10 9 8 12 12 C 1.37238 * 126.72227 * 180.02562 * 2 1 3 13 13 C 1.47236 * 128.58638 * 0.21691 * 12 2 1 14 14 O 1.21628 * 120.00444 * 269.68358 * 13 12 2 15 15 N 1.34779 * 120.00130 * 89.67858 * 13 12 2 16 16 C 1.39136 * 120.00308 * 176.69564 * 15 13 12 17 17 C 1.39512 * 119.83349 * 217.56036 * 16 15 13 18 18 C 1.36363 * 120.16537 * 179.71857 * 17 16 15 19 19 C 1.40874 * 119.82822 * 0.54832 * 18 17 16 20 20 C 1.41144 * 120.15981 * 179.70159 * 19 18 17 21 21 H 1.08002 * 119.99831 * 157.92727 * 20 19 18 22 22 C 1.39904 * 120.00268 * 337.92366 * 20 19 18 23 23 N 1.30878 * 119.99719 * 327.60022 * 22 20 19 24 24 Si 1.86794 * 120.00063 * 147.60161 * 22 20 19 25 25 H 1.48505 * 109.47281 * 94.98866 * 24 22 20 26 26 H 1.48507 * 109.46929 * 214.98432 * 24 22 20 27 27 H 1.48498 * 109.47449 * 334.98562 * 24 22 20 28 28 C 1.40875 * 119.68179 * 359.72358 * 19 18 17 29 29 C 1.36362 * 119.82668 * 0.02562 * 28 19 18 30 30 H 1.08997 * 109.47190 * 269.95411 * 1 2 3 31 31 H 1.08998 * 109.46642 * 29.95263 * 1 2 3 32 32 H 1.08999 * 109.46957 * 149.95082 * 1 2 3 33 33 H 1.08001 * 120.05836 * 0.02830 * 7 6 5 34 34 H 1.07995 * 119.93565 * 180.25458 * 8 7 6 35 35 H 1.07996 * 119.88106 * 179.76331 * 9 8 7 36 36 H 1.08001 * 119.93756 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.05839 * 180.02562 * 11 10 9 38 38 H 0.97006 * 119.99330 * 356.69342 * 15 13 12 39 39 H 1.07998 * 119.91817 * 359.97438 * 17 16 15 40 40 H 1.07998 * 120.08324 * 180.25635 * 18 17 16 41 41 H 0.96996 * 120.00300 * 180.02562 * 23 22 20 42 42 H 1.08001 * 120.08871 * 179.97438 * 28 19 18 43 43 H 1.07999 * 119.91593 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3054 1.0700 0.0000 4 7 3.4794 0.7919 -0.0005 5 6 3.6791 -0.5015 -0.0015 6 6 4.9805 -1.2130 -0.0018 7 6 5.1221 -2.4126 0.6936 8 6 6.3341 -3.0725 0.6862 9 6 7.4100 -2.5407 -0.0016 10 6 7.2768 -1.3477 -0.6891 11 6 6.0680 -0.6817 -0.6926 12 6 2.3276 -1.1000 -0.0005 13 6 1.9542 -2.5242 -0.0055 14 8 1.8024 -3.1169 1.0457 15 7 1.7805 -3.1713 -1.1750 16 6 1.4952 -4.5331 -1.1810 17 6 2.0455 -5.3531 -2.1664 18 6 1.7751 -6.6896 -2.1753 19 6 0.9284 -7.2398 -1.1929 20 6 0.6388 -8.6212 -1.1993 21 1 0.3070 -9.1075 -0.2938 22 6 0.7813 -9.3605 -2.3785 23 7 0.5542 -8.7950 -3.5368 24 14 1.2957 -11.1544 -2.2997 25 1 0.0873 -12.0174 -2.3236 26 1 2.1556 -11.4745 -3.4674 27 1 2.0530 -11.3977 -1.0458 28 6 0.3719 -6.4045 -0.2044 29 6 0.6556 -5.0707 -0.2052 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3632 0.8904 -0.5131 32 1 -0.3633 -0.8895 -0.5146 33 1 4.2837 -2.8269 1.2339 34 1 6.4438 -4.0042 1.2212 35 1 8.3577 -3.0585 -0.0015 36 1 8.1200 -0.9372 -1.2247 37 1 5.9650 0.2494 -1.2300 38 1 1.8543 -2.6875 -2.0125 39 1 2.6905 -4.9291 -2.9217 40 1 2.2050 -7.3239 -2.9364 41 1 0.6527 -9.3075 -4.3543 42 1 -0.2783 -6.8193 0.5517 43 1 0.2294 -4.4290 0.5517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000137447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:39 Heat of formation + Delta-G solvation = 69.365623 kcal Electronic energy + Delta-G solvation = -29054.862951 eV Core-core repulsion = 25032.781253 eV Total energy + Delta-G solvation = -4022.081698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.92651 -39.68392 -39.10390 -37.28923 -34.53241 -34.33229 -33.70100 -33.01213 -31.06121 -30.51421 -29.63552 -29.20304 -28.06899 -25.69059 -24.35653 -23.39104 -22.55041 -21.62510 -20.89946 -20.35987 -19.61165 -17.91061 -17.82263 -17.42781 -17.19367 -16.40816 -16.20874 -15.33805 -15.25804 -15.02148 -14.61951 -14.20068 -14.03042 -13.70937 -13.52725 -13.48805 -13.42701 -13.01579 -12.98300 -12.76853 -12.67407 -12.16105 -12.05416 -11.60792 -11.52263 -11.42232 -11.20480 -11.12842 -11.00984 -10.63116 -10.56454 -10.28977 -9.82450 -9.69565 -9.43602 -9.18356 -9.05719 -8.77849 -8.72335 -7.61234 -7.22438 -6.95103 -4.33520 0.76263 1.23558 1.29777 2.08446 2.39454 2.70242 2.85871 3.01589 3.03979 3.07290 3.23851 3.56301 3.67232 3.84683 3.93398 4.24855 4.43879 4.77808 4.84520 4.85383 4.95325 4.99353 5.15806 5.19693 5.30804 5.35617 5.47121 5.52028 5.62054 5.73112 5.82104 5.93074 6.14398 6.29839 6.34962 6.38533 6.41724 6.68271 6.81361 6.87930 6.93958 7.06564 7.21399 7.49911 7.60834 7.79614 7.95837 8.07183 8.17753 8.19489 8.47888 8.62788 8.77910 8.92418 9.95870 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.002937 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.371666 B = 9530.374795 C =11158.374160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.013 3.987 3 O 0.101 5.899 4 N -0.349 5.349 5 C 0.094 3.906 6 C -0.029 4.029 7 C -0.083 4.083 8 C -0.115 4.115 9 C -0.106 4.106 10 C -0.125 4.125 11 C -0.090 4.090 12 C -0.231 4.231 13 C 0.581 3.419 14 O -0.519 6.519 15 N -0.631 5.631 16 C -0.028 4.028 17 C -0.097 4.097 18 C -0.171 4.171 19 C 0.115 3.885 20 C -0.463 4.463 21 H 0.083 0.917 22 C 0.088 3.912 23 N -0.767 5.767 24 Si 0.896 3.104 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.257 1.257 28 C -0.224 4.224 29 C -0.063 4.063 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.396 0.604 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 14.268 1.583 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 O 0.036 5.964 4 N -0.053 5.053 5 C -0.066 4.066 6 C -0.030 4.030 7 C -0.102 4.102 8 C -0.133 4.133 9 C -0.124 4.124 10 C -0.143 4.143 11 C -0.109 4.109 12 C -0.238 4.238 13 C 0.366 3.634 14 O -0.395 6.395 15 N -0.273 5.273 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.191 4.191 19 C 0.112 3.888 20 C -0.491 4.491 21 H 0.101 0.899 22 C -0.134 4.134 23 N -0.389 5.389 24 Si 0.719 3.281 25 H -0.194 1.194 26 H -0.198 1.198 27 H -0.180 1.180 28 C -0.244 4.244 29 C -0.083 4.083 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.229 0.771 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.925 14.910 2.068 16.569 hybrid contribution 0.009 -1.266 -0.591 1.397 sum 6.933 13.644 1.477 15.376 Atomic orbital electron populations 1.20480 0.82938 1.05174 1.04936 1.24579 0.96014 0.84917 0.99541 1.84483 1.11104 1.33059 1.67742 1.73936 0.95658 1.15834 1.19829 1.22949 0.93208 0.88518 1.01894 1.17613 0.89223 0.95225 1.00988 1.21402 0.98504 0.93163 0.97124 1.21148 0.92552 1.00045 0.99584 1.21316 0.98907 0.95702 0.96491 1.21059 0.97243 0.95813 1.00194 1.21143 0.92063 0.99489 0.98181 1.22104 0.92116 0.95771 1.13815 1.16776 0.78353 0.83581 0.84723 1.90820 1.50621 1.66742 1.31340 1.42841 1.67992 1.09083 1.07355 1.17006 1.09401 0.81124 1.04418 1.20162 0.99614 0.94112 0.97791 1.20611 1.02832 0.93267 1.02349 1.17598 0.88446 0.92704 0.90044 1.19536 1.39960 0.93425 0.96164 0.89921 1.25952 0.91680 1.01073 0.94682 1.69940 1.30152 1.39504 0.99345 0.86505 0.79809 0.82194 0.79578 1.19406 1.19844 1.18032 1.20584 1.06954 0.92849 1.04051 1.20277 0.95753 0.95426 0.96803 0.88582 0.89120 0.88542 0.84812 0.85180 0.85636 0.85553 0.85706 0.77079 0.89288 0.87467 0.90512 0.88668 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.32 36.01 0.37 -0.29 16 2 C 0.01 0.15 7.54 -34.67 -0.26 -0.11 16 3 O 0.10 1.29 11.05 18.63 0.21 1.49 16 4 N -0.35 -5.02 12.05 34.61 0.42 -4.60 16 5 C 0.09 1.42 7.03 -80.21 -0.56 0.86 16 6 C -0.03 -0.43 5.87 -104.91 -0.62 -1.05 16 7 C -0.08 -1.24 9.32 -39.24 -0.37 -1.61 16 8 C -0.12 -1.47 10.03 -39.63 -0.40 -1.87 16 9 C -0.11 -1.15 10.04 -39.51 -0.40 -1.55 16 10 C -0.13 -1.34 10.03 -39.63 -0.40 -1.74 16 11 C -0.09 -1.11 9.78 -39.24 -0.38 -1.50 16 12 C -0.23 -3.47 6.19 -102.69 -0.64 -4.11 16 13 C 0.58 10.32 6.25 -12.60 -0.08 10.24 16 14 O -0.52 -10.97 14.07 5.25 0.07 -10.90 16 15 N -0.63 -11.18 5.29 -10.76 -0.06 -11.24 16 16 C -0.03 -0.60 6.25 -83.60 -0.52 -1.12 16 17 C -0.10 -2.16 9.90 -39.78 -0.39 -2.56 16 18 C -0.17 -4.25 8.74 -39.26 -0.34 -4.60 16 19 C 0.11 2.98 5.57 -106.80 -0.60 2.39 16 20 C -0.46 -11.93 8.94 -37.86 -0.34 -12.27 16 21 H 0.08 2.06 8.02 -52.49 -0.42 1.64 16 22 C 0.09 2.12 4.77 -17.33 -0.08 2.04 16 23 N -0.77 -18.87 11.78 55.55 0.65 -18.21 16 24 Si 0.90 17.77 29.66 -169.99 -5.04 12.72 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.22 -5.53 9.74 -39.26 -0.38 -5.91 16 29 C -0.06 -1.46 8.59 -39.78 -0.34 -1.80 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.13 2.27 6.60 -52.49 -0.35 1.92 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.40 5.89 8.81 -40.82 -0.36 5.53 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.72 6.53 -52.49 -0.34 2.37 16 41 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.10 2.31 6.45 -52.49 -0.34 1.97 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -29.92 377.53 -9.53 -39.45 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.74 Total: 12.15 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -6.72 Total: -26.55 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 1.01 Total: -34.06 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.28 Total: -9.40 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.04 Total: 12.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.92 -9.53 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000137447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.811 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds