Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33502 * 126.72850 * 2 1 4 4 N 1.20651 * 113.40189 * 180.02562 * 3 2 1 5 5 C 1.30873 * 112.10453 * 0.02562 * 4 3 2 6 6 C 1.48318 * 127.44542 * 180.02562 * 5 4 3 7 7 C 1.39374 * 120.12830 * 144.71999 * 6 5 4 8 8 C 1.38008 * 119.87532 * 179.78880 * 7 6 5 9 9 C 1.38325 * 120.12731 * 0.46839 * 8 7 6 10 10 C 1.38334 * 120.24848 * 359.78762 * 9 8 7 11 11 C 1.38014 * 120.12139 * 359.97438 * 10 9 8 12 12 C 1.37238 * 126.72227 * 180.02562 * 2 1 3 13 13 C 1.47236 * 128.58638 * 0.21691 * 12 2 1 14 14 O 1.21628 * 120.00444 * 269.68358 * 13 12 2 15 15 N 1.34779 * 120.00130 * 89.67858 * 13 12 2 16 16 C 1.39136 * 120.00308 * 176.69564 * 15 13 12 17 17 C 1.39512 * 119.83349 * 217.56036 * 16 15 13 18 18 C 1.36363 * 120.16537 * 179.71857 * 17 16 15 19 19 C 1.40874 * 119.82822 * 0.54832 * 18 17 16 20 20 C 1.41144 * 120.15981 * 179.70159 * 19 18 17 21 21 H 1.08002 * 119.99831 * 157.92727 * 20 19 18 22 22 C 1.39904 * 120.00268 * 337.92366 * 20 19 18 23 23 N 1.30878 * 119.99719 * 327.60022 * 22 20 19 24 24 Si 1.86794 * 120.00063 * 147.60161 * 22 20 19 25 25 H 1.48505 * 109.47281 * 94.98866 * 24 22 20 26 26 H 1.48507 * 109.46929 * 214.98432 * 24 22 20 27 27 H 1.48498 * 109.47449 * 334.98562 * 24 22 20 28 28 C 1.40875 * 119.68179 * 359.72358 * 19 18 17 29 29 C 1.36362 * 119.82668 * 0.02562 * 28 19 18 30 30 H 1.08997 * 109.47190 * 269.95411 * 1 2 3 31 31 H 1.08998 * 109.46642 * 29.95263 * 1 2 3 32 32 H 1.08999 * 109.46957 * 149.95082 * 1 2 3 33 33 H 1.08001 * 120.05836 * 0.02830 * 7 6 5 34 34 H 1.07995 * 119.93565 * 180.25458 * 8 7 6 35 35 H 1.07996 * 119.88106 * 179.76331 * 9 8 7 36 36 H 1.08001 * 119.93756 * 180.02562 * 10 9 8 37 37 H 1.07997 * 120.05839 * 180.02562 * 11 10 9 38 38 H 0.97006 * 119.99330 * 356.69342 * 15 13 12 39 39 H 1.07998 * 119.91817 * 359.97438 * 17 16 15 40 40 H 1.07998 * 120.08324 * 180.25635 * 18 17 16 41 41 H 0.96996 * 120.00300 * 180.02562 * 23 22 20 42 42 H 1.08001 * 120.08871 * 179.97438 * 28 19 18 43 43 H 1.07999 * 119.91593 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3054 1.0700 0.0000 4 7 3.4794 0.7919 -0.0005 5 6 3.6791 -0.5015 -0.0015 6 6 4.9805 -1.2130 -0.0018 7 6 5.1221 -2.4126 0.6936 8 6 6.3341 -3.0725 0.6862 9 6 7.4100 -2.5407 -0.0016 10 6 7.2768 -1.3477 -0.6891 11 6 6.0680 -0.6817 -0.6926 12 6 2.3276 -1.1000 -0.0005 13 6 1.9542 -2.5242 -0.0055 14 8 1.8024 -3.1169 1.0457 15 7 1.7805 -3.1713 -1.1750 16 6 1.4952 -4.5331 -1.1810 17 6 2.0455 -5.3531 -2.1664 18 6 1.7751 -6.6896 -2.1753 19 6 0.9284 -7.2398 -1.1929 20 6 0.6388 -8.6212 -1.1993 21 1 0.3070 -9.1075 -0.2938 22 6 0.7813 -9.3605 -2.3785 23 7 0.5542 -8.7950 -3.5368 24 14 1.2957 -11.1544 -2.2997 25 1 0.0873 -12.0174 -2.3236 26 1 2.1556 -11.4745 -3.4674 27 1 2.0530 -11.3977 -1.0458 28 6 0.3719 -6.4045 -0.2044 29 6 0.6556 -5.0707 -0.2052 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3632 0.8904 -0.5131 32 1 -0.3633 -0.8895 -0.5146 33 1 4.2837 -2.8269 1.2339 34 1 6.4438 -4.0042 1.2212 35 1 8.3577 -3.0585 -0.0015 36 1 8.1200 -0.9372 -1.2247 37 1 5.9650 0.2494 -1.2300 38 1 1.8543 -2.6875 -2.0125 39 1 2.6905 -4.9291 -2.9217 40 1 2.2050 -7.3239 -2.9364 41 1 0.6527 -9.3075 -4.3543 42 1 -0.2783 -6.8193 0.5517 43 1 0.2294 -4.4290 0.5517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000137447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = 54.605365 kcal Electronic energy + Delta-G solvation = -29055.503003 eV Core-core repulsion = 25032.781253 eV Total energy + Delta-G solvation = -4022.721751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -46.01613 -41.22441 -40.10244 -39.05862 -36.24830 -35.45681 -34.86960 -34.54868 -32.01382 -31.55849 -31.46436 -30.94845 -29.05260 -27.24833 -25.73869 -24.48940 -23.66054 -23.25501 -22.54231 -21.68121 -20.91446 -19.37406 -19.09132 -18.94512 -18.29645 -17.93399 -17.34205 -17.03161 -16.46345 -16.17069 -15.87065 -15.76390 -15.49144 -15.09400 -14.67645 -14.48458 -14.45988 -14.30052 -14.14962 -13.99068 -13.92463 -13.84157 -13.58781 -13.36243 -12.85646 -12.71291 -12.54691 -12.37581 -12.35163 -12.13134 -11.96946 -11.62570 -11.62007 -11.31473 -10.97107 -10.56440 -10.51312 -10.02586 -9.71114 -9.50037 -9.05588 -8.75537 -6.25175 -0.24935 0.19328 0.33129 0.73768 1.00741 1.12859 1.29268 1.39681 1.50104 1.58382 1.75348 2.19395 2.27934 2.61597 2.68448 2.81108 3.21673 3.64203 3.74332 3.79220 3.90008 3.95890 4.10525 4.19824 4.32483 4.36811 4.45054 4.48525 4.53097 4.55732 4.67710 4.86713 4.87992 4.98351 5.04411 5.08144 5.11603 5.24127 5.36759 5.39024 5.41706 5.46017 5.62126 5.82741 5.89359 5.97899 6.05668 6.32568 6.55480 6.61086 6.87718 6.94448 7.01936 7.21278 8.18769 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.002937 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.371666 B = 9530.374795 C =11158.374160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.042 3.958 3 O 0.110 5.890 4 N -0.358 5.358 5 C 0.088 3.912 6 C -0.051 4.051 7 C -0.108 4.108 8 C -0.127 4.127 9 C -0.100 4.100 10 C -0.117 4.117 11 C -0.094 4.094 12 C -0.265 4.265 13 C 0.595 3.405 14 O -0.556 6.556 15 N -0.625 5.625 16 C -0.013 4.013 17 C -0.096 4.096 18 C -0.188 4.188 19 C 0.088 3.912 20 C -0.502 4.502 21 H 0.077 0.923 22 C 0.054 3.946 23 N -0.795 5.795 24 Si 0.970 3.030 25 H -0.259 1.259 26 H -0.261 1.261 27 H -0.261 1.261 28 C -0.243 4.243 29 C -0.070 4.070 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.412 0.588 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.295 0.705 42 H 0.095 0.905 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.699 15.563 0.418 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 O 0.046 5.954 4 N -0.061 5.061 5 C -0.072 4.072 6 C -0.052 4.052 7 C -0.128 4.128 8 C -0.145 4.145 9 C -0.118 4.118 10 C -0.134 4.134 11 C -0.113 4.113 12 C -0.272 4.272 13 C 0.382 3.618 14 O -0.435 6.435 15 N -0.268 5.268 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.208 4.208 19 C 0.085 3.915 20 C -0.529 4.529 21 H 0.095 0.905 22 C -0.167 4.167 23 N -0.418 5.418 24 Si 0.790 3.210 25 H -0.184 1.184 26 H -0.185 1.185 27 H -0.185 1.185 28 C -0.263 4.263 29 C -0.089 4.089 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.154 0.846 38 H 0.249 0.751 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.335 16.249 0.882 18.283 hybrid contribution -0.420 -1.483 -0.198 1.554 sum 7.915 14.766 0.684 16.767 Atomic orbital electron populations 1.20754 0.80060 1.06732 1.06211 1.25150 0.97205 0.83697 0.96106 1.84479 1.10791 1.32904 1.67245 1.73915 0.96330 1.15405 1.20493 1.23118 0.93476 0.88752 1.01848 1.17782 0.89954 0.95391 1.02062 1.21268 0.98666 0.94315 0.98538 1.21357 0.92515 1.00415 1.00180 1.21698 0.99369 0.95699 0.95007 1.21499 0.97498 0.95195 0.99219 1.21373 0.92098 1.00011 0.97842 1.21785 0.93186 0.94694 1.17579 1.16966 0.76670 0.84440 0.83765 1.90797 1.51970 1.68016 1.32682 1.42722 1.67966 1.07646 1.08458 1.17033 1.07620 0.82853 1.03079 1.20386 0.99435 0.93361 0.98379 1.20612 1.03475 0.94308 1.02381 1.17895 0.89310 0.93373 0.90918 1.19739 1.42253 0.94015 0.96925 0.90528 1.26711 0.90854 1.05326 0.93764 1.69935 1.30268 1.41511 1.00130 0.85393 0.79600 0.76500 0.79521 1.18377 1.18535 1.18512 1.20718 1.07609 0.93605 1.04368 1.20383 0.96193 0.95001 0.97361 0.87234 0.85611 0.88884 0.87929 0.84503 0.82371 0.81996 0.84584 0.75139 0.86527 0.88390 0.89418 0.88708 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.32 71.24 0.74 -0.43 16 2 C 0.04 0.96 7.54 25.45 0.19 1.15 16 3 O 0.11 2.61 11.05 76.92 0.85 3.46 16 4 N -0.36 -9.92 12.05 -44.99 -0.54 -10.46 16 5 C 0.09 2.63 7.03 44.51 0.31 2.94 16 6 C -0.05 -1.48 5.87 -20.05 -0.12 -1.60 16 7 C -0.11 -3.36 9.32 22.49 0.21 -3.15 16 8 C -0.13 -3.20 10.03 22.24 0.22 -2.98 16 9 C -0.10 -1.92 10.04 22.31 0.22 -1.70 16 10 C -0.12 -2.15 10.03 22.24 0.22 -1.92 16 11 C -0.09 -2.19 9.78 22.49 0.22 -1.97 16 12 C -0.26 -7.90 6.19 -18.61 -0.12 -8.02 16 13 C 0.60 21.35 6.25 86.61 0.54 21.89 16 14 O -0.56 -24.27 14.07 -4.12 -0.06 -24.33 16 15 N -0.62 -21.99 5.29 -306.21 -1.62 -23.61 16 16 C -0.01 -0.58 6.25 38.60 0.24 -0.33 16 17 C -0.10 -4.29 9.90 22.14 0.22 -4.07 16 18 C -0.19 -9.60 8.74 22.48 0.20 -9.40 16 19 C 0.09 4.74 5.57 -21.28 -0.12 4.62 16 20 C -0.50 -26.84 8.94 23.39 0.21 -26.64 16 21 H 0.08 4.02 8.02 -2.91 -0.02 3.99 16 22 C 0.05 2.61 4.77 85.24 0.41 3.02 16 23 N -0.80 -39.63 11.78 21.82 0.26 -39.37 16 24 Si 0.97 36.63 29.66 68.60 2.03 38.66 16 25 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 26 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 28 C -0.24 -12.51 9.74 22.48 0.22 -12.30 16 29 C -0.07 -3.31 8.59 22.14 0.19 -3.12 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.10 3.76 6.60 -2.91 -0.02 3.74 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.41 11.85 8.81 -92.70 -0.82 11.03 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.10 5.10 6.53 -2.91 -0.02 5.08 16 41 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 42 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.11 4.89 6.45 -2.91 -0.02 4.87 16 Total: -1.00 -67.95 377.53 5.39 -62.56 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.26 Total: 37.10 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 4.21 Total: -44.01 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.90 Total: -73.45 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.79 Total: -20.86 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -67.95 5.39 -62.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000137447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.163 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds