Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86792 * 120.00618 * 2 1 4 4 H 1.48504 * 109.47235 * 272.63134 * 3 2 1 5 5 H 1.48504 * 109.46821 * 32.62922 * 3 2 1 6 6 H 1.48498 * 109.47366 * 152.62803 * 3 2 1 7 7 C 1.40121 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00480 * 2.27645 * 7 2 1 9 9 C 1.46252 * 119.99811 * 182.26992 * 7 2 1 10 10 O 1.21653 * 120.00080 * 334.48055 * 9 7 2 11 11 N 1.34775 * 119.99894 * 154.47767 * 9 7 2 12 12 C 1.46504 * 120.00051 * 5.57206 * 11 9 7 13 13 C 1.50701 * 109.47122 * 273.21743 * 12 11 9 14 14 C 1.38223 * 120.01404 * 104.58390 * 13 12 11 15 15 C 1.38222 * 120.02408 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.05164 * 0.02562 * 15 14 13 17 17 C 1.38170 * 120.02797 * 0.02562 * 16 15 14 18 18 C 1.38443 * 120.01187 * 284.30170 * 13 12 11 19 19 F 1.35100 * 120.02697 * 0.02562 * 18 13 12 20 20 C 1.34778 * 120.00179 * 185.57644 * 11 9 7 21 21 O 1.21557 * 120.00332 * 185.95735 * 20 11 9 22 22 N 1.34778 * 119.99784 * 5.68098 * 20 11 9 23 23 C 1.46494 * 119.99916 * 175.91439 * 22 20 11 24 24 C 1.53002 * 109.47205 * 274.99951 * 23 22 20 25 25 C 1.52995 * 109.47182 * 180.02562 * 24 23 22 26 26 C 1.53001 * 109.47356 * 59.99989 * 25 24 23 27 27 C 1.53002 * 109.46984 * 300.00133 * 26 25 24 28 28 C 1.52995 * 109.47182 * 59.99761 * 27 26 25 29 29 H 0.96997 * 119.99370 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46999 * 33.21720 * 12 11 9 31 31 H 1.09001 * 109.47194 * 153.21674 * 12 11 9 32 32 H 1.07997 * 119.98698 * 359.97438 * 14 13 12 33 33 H 1.08004 * 119.97225 * 179.97438 * 15 14 13 34 34 H 1.08006 * 119.98334 * 179.97438 * 16 15 14 35 35 H 1.08005 * 120.01574 * 179.97438 * 17 16 15 36 36 H 0.97003 * 120.00013 * 355.90889 * 22 20 11 37 37 H 1.09003 * 109.47504 * 34.99643 * 23 22 20 38 38 H 1.08996 * 109.47020 * 300.00153 * 24 23 22 39 39 H 1.09005 * 109.47367 * 59.99957 * 24 23 22 40 40 H 1.09003 * 109.47451 * 299.99646 * 25 24 23 41 41 H 1.09008 * 109.46986 * 180.02562 * 25 24 23 42 42 H 1.09001 * 109.47441 * 179.97438 * 26 25 24 43 43 H 1.08996 * 109.46986 * 59.99840 * 26 25 24 44 44 H 1.09003 * 109.46638 * 299.99617 * 27 26 25 45 45 H 1.08998 * 109.46752 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47188 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.47203 * 60.00038 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4325 2.0784 -1.3986 5 1 1.4670 2.6359 0.7550 6 1 3.5648 1.4245 0.6437 7 6 2.0069 -1.2136 -0.0005 8 1 1.4675 -2.1485 -0.0381 9 6 3.4686 -1.2142 0.0496 10 8 4.0918 -0.2547 -0.3638 11 7 4.1251 -2.2777 0.5539 12 6 3.3836 -3.4813 0.9386 13 6 2.8971 -3.3394 2.3579 14 6 1.5656 -3.0655 2.6082 15 6 1.1191 -2.9358 3.9099 16 6 2.0036 -3.0794 4.9629 17 6 3.3353 -3.3522 4.7150 18 6 3.7825 -3.4891 3.4116 19 9 5.0831 -3.7620 3.1683 20 6 5.4637 -2.2341 0.7044 21 8 6.0686 -3.2280 1.0563 22 7 6.1324 -1.0898 0.4594 23 6 7.5741 -1.0163 0.7085 24 6 7.8208 -0.6733 2.1791 25 6 9.3264 -0.5959 2.4391 26 6 9.9421 0.4884 1.5524 27 6 9.6955 0.1455 0.0819 28 6 8.1898 0.0680 -0.1782 29 1 -0.4849 0.8401 0.0004 30 1 2.5300 -3.6104 0.2731 31 1 4.0374 -4.3502 0.8638 32 1 0.8740 -2.9527 1.7865 33 1 0.0786 -2.7214 4.1046 34 1 1.6536 -2.9775 5.9796 35 1 4.0261 -3.4639 5.5377 36 1 5.6590 -0.3150 0.1180 37 1 8.0323 -1.9781 0.4780 38 1 7.3626 0.2884 2.4096 39 1 7.3818 -1.4456 2.8108 40 1 9.7850 -1.5575 2.2085 41 1 9.5021 -0.3520 3.4869 42 1 11.0147 0.5439 1.7380 43 1 9.4836 1.4500 1.7831 44 1 10.1540 -0.8161 -0.1487 45 1 10.1345 0.9177 -0.5498 46 1 8.0141 -0.1758 -1.2259 47 1 7.7313 1.0296 0.0525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000171078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -94.484699 kcal Electronic energy + Delta-G solvation = -32642.019877 eV Core-core repulsion = 28317.896966 eV Total energy + Delta-G solvation = -4324.122911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.22848 -40.46897 -38.69962 -38.19331 -37.07297 -34.66544 -33.40225 -33.05598 -31.18846 -30.63493 -30.04267 -28.96316 -27.15385 -25.80449 -22.80581 -22.47466 -22.28162 -21.70060 -21.11527 -19.83229 -19.13530 -17.43498 -17.11010 -16.73433 -16.50173 -15.85845 -15.68070 -15.44328 -14.95901 -14.78575 -14.67030 -14.31296 -14.06915 -14.02261 -13.75466 -13.58426 -13.04460 -12.88991 -12.70137 -12.59884 -12.57092 -12.33720 -12.23381 -12.05596 -11.83889 -11.75871 -11.29895 -11.12155 -11.07756 -11.01624 -10.69675 -10.67673 -10.56625 -10.27606 -10.04231 -9.78453 -9.52881 -9.30280 -8.65489 -8.58152 -8.31029 -8.21313 -8.07634 -6.92332 -5.17288 1.50758 1.63121 3.07122 3.20885 3.42665 3.49641 3.53204 4.04749 4.14021 4.22565 4.69747 4.75202 4.82924 4.88681 5.00121 5.08331 5.13026 5.21531 5.32930 5.35984 5.40314 5.58410 5.61222 5.62083 5.65307 5.71639 5.74503 5.86090 5.90580 6.08734 6.13005 6.17204 6.21430 6.25791 6.27136 6.35185 6.37923 6.49081 6.51200 6.53061 6.60405 6.76478 6.84905 7.17622 7.31484 7.31607 7.41219 7.83647 8.13108 8.56232 8.77803 9.36029 9.48956 10.06586 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.005237 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.345842 B = 5344.858783 C = 7300.023956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.105 3.895 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.311 1.311 6 H -0.240 1.240 7 C -0.510 4.510 8 H 0.100 0.900 9 C 0.540 3.460 10 O -0.586 6.586 11 N -0.573 5.573 12 C 0.167 3.833 13 C -0.133 4.133 14 C -0.050 4.050 15 C -0.141 4.141 16 C -0.094 4.094 17 C -0.174 4.174 18 C 0.112 3.888 19 F -0.120 7.120 20 C 0.699 3.301 21 O -0.588 6.588 22 N -0.728 5.728 23 C 0.156 3.844 24 C -0.129 4.129 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.124 4.124 29 H 0.287 0.713 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.416 0.584 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 -2.051 6.025 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.115 4.115 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.241 1.241 6 H -0.164 1.164 7 C -0.545 4.545 8 H 0.118 0.882 9 C 0.354 3.646 10 O -0.476 6.476 11 N -0.315 5.315 12 C 0.044 3.956 13 C -0.135 4.135 14 C -0.068 4.068 15 C -0.159 4.159 16 C -0.112 4.112 17 C -0.193 4.193 18 C 0.092 3.908 19 F -0.098 7.098 20 C 0.402 3.598 21 O -0.467 6.467 22 N -0.406 5.406 23 C 0.049 3.951 24 C -0.168 4.168 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.162 4.162 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.274 0.726 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.074 -2.165 5.982 10.279 hybrid contribution 0.126 1.001 -0.040 1.009 sum 8.200 -1.165 5.942 10.193 Atomic orbital electron populations 1.69470 1.07717 1.30448 1.36316 1.25707 0.94876 1.01684 0.89256 0.85784 0.80122 0.77938 0.79533 1.19956 1.24065 1.16377 1.20681 0.87085 0.96052 1.50670 0.88237 1.18622 0.90003 0.79138 0.76815 1.89840 1.67162 1.35480 1.55070 1.46200 1.05715 1.17834 1.61747 1.20178 0.96825 0.87449 0.91157 1.20268 0.94112 1.03772 0.95386 1.21217 0.94471 0.93604 0.97522 1.21169 1.00024 1.02056 0.92630 1.20925 0.92447 0.98654 0.99212 1.21028 0.97193 1.05994 0.95037 1.17753 0.79240 1.00287 0.93520 1.91644 1.32544 1.90583 1.95026 1.16431 0.81410 0.84119 0.77854 1.90828 1.67224 1.34675 1.53949 1.47199 1.08546 1.15715 1.69141 1.20706 0.81647 0.98969 0.93739 1.21942 0.95678 1.01870 0.97322 1.21481 0.95624 0.99023 0.99106 1.21565 1.00051 0.99027 0.95133 1.21470 0.95641 1.01635 0.96382 1.21753 0.95394 0.99200 0.99893 0.90288 0.88047 0.88951 0.83840 0.85679 0.85828 0.85601 0.72576 0.90299 0.92235 0.91568 0.91924 0.92216 0.92248 0.92049 0.91863 0.91900 0.91450 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.11 13.92 55.55 0.77 -19.34 16 2 C 0.11 2.62 5.52 -17.35 -0.10 2.52 16 3 Si 0.94 21.95 26.48 -169.99 -4.50 17.44 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.31 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.24 -5.89 5.85 56.52 0.33 -5.56 16 7 C -0.51 -12.45 8.28 -35.66 -0.30 -12.74 16 8 H 0.10 2.37 5.34 -52.49 -0.28 2.08 16 9 C 0.54 13.06 7.06 -13.04 -0.09 12.97 16 10 O -0.59 -14.75 8.99 5.23 0.05 -14.70 16 11 N -0.57 -12.74 2.55 -123.61 -0.32 -13.05 16 12 C 0.17 3.23 4.83 -5.19 -0.03 3.20 16 13 C -0.13 -2.47 5.35 -104.55 -0.56 -3.03 16 14 C -0.05 -0.85 8.94 -39.59 -0.35 -1.21 16 15 C -0.14 -2.10 10.04 -39.58 -0.40 -2.50 16 16 C -0.09 -1.31 10.04 -39.60 -0.40 -1.71 16 17 C -0.17 -2.70 10.03 -39.52 -0.40 -3.10 16 18 C 0.11 2.07 7.25 -39.42 -0.29 1.78 16 19 F -0.12 -2.45 13.75 2.25 0.03 -2.42 16 20 C 0.70 15.74 7.81 -86.92 -0.68 15.06 16 21 O -0.59 -13.72 12.92 5.32 0.07 -13.65 16 22 N -0.73 -15.22 4.87 -58.68 -0.29 -15.51 16 23 C 0.16 2.68 2.49 -67.93 -0.17 2.51 16 24 C -0.13 -2.06 5.49 -26.73 -0.15 -2.20 16 25 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 26 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 27 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 28 C -0.12 -1.78 5.39 -26.73 -0.14 -1.93 16 29 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 30 H 0.10 1.82 6.14 -51.93 -0.32 1.51 16 31 H 0.09 1.76 7.18 -51.93 -0.37 1.39 16 32 H 0.14 2.51 6.73 -52.49 -0.35 2.16 16 33 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.42 9.26 4.73 -44.49 -0.21 9.05 16 37 H 0.08 1.44 7.52 -51.93 -0.39 1.05 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -28.38 371.38 -9.73 -38.11 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -6.63 Total: 12.42 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -4.51 Total: 5.11 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.17 Total: -47.90 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: 0.12 Total: -28.36 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.03 Total: -2.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.50 Total: 17.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.38 -9.73 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.377 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds