Wall clock time and date at job start Tue Mar 31 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86792 * 120.00618 * 2 1 4 4 H 1.48504 * 109.47235 * 272.63134 * 3 2 1 5 5 H 1.48504 * 109.46821 * 32.62922 * 3 2 1 6 6 H 1.48498 * 109.47366 * 152.62803 * 3 2 1 7 7 C 1.40121 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00480 * 2.27645 * 7 2 1 9 9 C 1.46252 * 119.99811 * 182.26992 * 7 2 1 10 10 O 1.21653 * 120.00080 * 334.48055 * 9 7 2 11 11 N 1.34775 * 119.99894 * 154.47767 * 9 7 2 12 12 C 1.46504 * 120.00051 * 5.57206 * 11 9 7 13 13 C 1.50701 * 109.47122 * 273.21743 * 12 11 9 14 14 C 1.38223 * 120.01404 * 104.58390 * 13 12 11 15 15 C 1.38222 * 120.02408 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.05164 * 0.02562 * 15 14 13 17 17 C 1.38170 * 120.02797 * 0.02562 * 16 15 14 18 18 C 1.38443 * 120.01187 * 284.30170 * 13 12 11 19 19 F 1.35100 * 120.02697 * 0.02562 * 18 13 12 20 20 C 1.34778 * 120.00179 * 185.57644 * 11 9 7 21 21 O 1.21557 * 120.00332 * 185.95735 * 20 11 9 22 22 N 1.34778 * 119.99784 * 5.68098 * 20 11 9 23 23 C 1.46494 * 119.99916 * 175.91439 * 22 20 11 24 24 C 1.53002 * 109.47205 * 274.99951 * 23 22 20 25 25 C 1.52995 * 109.47182 * 180.02562 * 24 23 22 26 26 C 1.53001 * 109.47356 * 59.99989 * 25 24 23 27 27 C 1.53002 * 109.46984 * 300.00133 * 26 25 24 28 28 C 1.52995 * 109.47182 * 59.99761 * 27 26 25 29 29 H 0.96997 * 119.99370 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46999 * 33.21720 * 12 11 9 31 31 H 1.09001 * 109.47194 * 153.21674 * 12 11 9 32 32 H 1.07997 * 119.98698 * 359.97438 * 14 13 12 33 33 H 1.08004 * 119.97225 * 179.97438 * 15 14 13 34 34 H 1.08006 * 119.98334 * 179.97438 * 16 15 14 35 35 H 1.08005 * 120.01574 * 179.97438 * 17 16 15 36 36 H 0.97003 * 120.00013 * 355.90889 * 22 20 11 37 37 H 1.09003 * 109.47504 * 34.99643 * 23 22 20 38 38 H 1.08996 * 109.47020 * 300.00153 * 24 23 22 39 39 H 1.09005 * 109.47367 * 59.99957 * 24 23 22 40 40 H 1.09003 * 109.47451 * 299.99646 * 25 24 23 41 41 H 1.09008 * 109.46986 * 180.02562 * 25 24 23 42 42 H 1.09001 * 109.47441 * 179.97438 * 26 25 24 43 43 H 1.08996 * 109.46986 * 59.99840 * 26 25 24 44 44 H 1.09003 * 109.46638 * 299.99617 * 27 26 25 45 45 H 1.08998 * 109.46752 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47188 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.47203 * 60.00038 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2406 1.6176 0.0000 4 1 2.4325 2.0784 -1.3986 5 1 1.4670 2.6359 0.7550 6 1 3.5648 1.4245 0.6437 7 6 2.0069 -1.2136 -0.0005 8 1 1.4675 -2.1485 -0.0381 9 6 3.4686 -1.2142 0.0496 10 8 4.0918 -0.2547 -0.3638 11 7 4.1251 -2.2777 0.5539 12 6 3.3836 -3.4813 0.9386 13 6 2.8971 -3.3394 2.3579 14 6 1.5656 -3.0655 2.6082 15 6 1.1191 -2.9358 3.9099 16 6 2.0036 -3.0794 4.9629 17 6 3.3353 -3.3522 4.7150 18 6 3.7825 -3.4891 3.4116 19 9 5.0831 -3.7620 3.1683 20 6 5.4637 -2.2341 0.7044 21 8 6.0686 -3.2280 1.0563 22 7 6.1324 -1.0898 0.4594 23 6 7.5741 -1.0163 0.7085 24 6 7.8208 -0.6733 2.1791 25 6 9.3264 -0.5959 2.4391 26 6 9.9421 0.4884 1.5524 27 6 9.6955 0.1455 0.0819 28 6 8.1898 0.0680 -0.1782 29 1 -0.4849 0.8401 0.0004 30 1 2.5300 -3.6104 0.2731 31 1 4.0374 -4.3502 0.8638 32 1 0.8740 -2.9527 1.7865 33 1 0.0786 -2.7214 4.1046 34 1 1.6536 -2.9775 5.9796 35 1 4.0261 -3.4639 5.5377 36 1 5.6590 -0.3150 0.1180 37 1 8.0323 -1.9781 0.4780 38 1 7.3626 0.2884 2.4096 39 1 7.3818 -1.4456 2.8108 40 1 9.7850 -1.5575 2.2085 41 1 9.5021 -0.3520 3.4869 42 1 11.0147 0.5439 1.7380 43 1 9.4836 1.4500 1.7831 44 1 10.1540 -0.8161 -0.1487 45 1 10.1345 0.9177 -0.5498 46 1 8.0141 -0.1758 -1.2259 47 1 7.7313 1.0296 0.0525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000171078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:46 Heat of formation + Delta-G solvation = -108.811169 kcal Electronic energy + Delta-G solvation = -32642.641120 eV Core-core repulsion = 28317.896966 eV Total energy + Delta-G solvation = -4324.744154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.69839 -42.20223 -40.01033 -39.56966 -38.77521 -36.25689 -35.21730 -34.74201 -32.59553 -31.74310 -31.32160 -30.33894 -28.97909 -27.26356 -24.42995 -23.62702 -23.57227 -23.10748 -22.43463 -21.28177 -20.58402 -19.24595 -18.56461 -18.47070 -18.10559 -17.38833 -17.14282 -16.94088 -16.45441 -16.23050 -16.16799 -15.93051 -15.44452 -15.22353 -15.02728 -14.95789 -14.68043 -14.53441 -14.31975 -14.15069 -14.07697 -13.82219 -13.45163 -13.26990 -13.18171 -13.16840 -13.03367 -12.71763 -12.37366 -12.25824 -12.12685 -12.06849 -11.63601 -11.57680 -11.41178 -11.30572 -11.21978 -11.13570 -10.42135 -10.13801 -9.86270 -9.78770 -9.53083 -8.84960 -7.10287 0.20880 0.35284 1.17389 1.36322 1.55305 1.61651 1.86495 2.29891 2.36363 2.75801 3.10905 3.17699 3.45515 3.69249 3.77699 3.81292 3.82664 4.01663 4.10168 4.21105 4.27194 4.31823 4.39815 4.43010 4.50791 4.51145 4.54494 4.62335 4.64069 4.65189 4.87425 5.01166 5.04195 5.06641 5.16439 5.19285 5.22207 5.25574 5.27222 5.34097 5.39924 5.46252 5.48791 5.55851 5.58582 5.75790 5.96600 6.05699 6.23154 6.65260 7.00717 7.54831 7.64338 8.17276 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.005237 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.345842 B = 5344.858783 C = 7300.023956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.083 3.917 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.100 0.900 9 C 0.537 3.463 10 O -0.601 6.601 11 N -0.575 5.575 12 C 0.166 3.834 13 C -0.150 4.150 14 C -0.062 4.062 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.171 4.171 18 C 0.081 3.919 19 F -0.140 7.140 20 C 0.692 3.308 21 O -0.602 6.602 22 N -0.732 5.732 23 C 0.150 3.850 24 C -0.123 4.123 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.119 4.119 29 H 0.296 0.704 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.952 -1.072 7.610 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.136 4.136 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.186 1.186 7 C -0.549 4.549 8 H 0.118 0.882 9 C 0.351 3.649 10 O -0.492 6.492 11 N -0.316 5.316 12 C 0.044 3.956 13 C -0.152 4.152 14 C -0.081 4.081 15 C -0.154 4.154 16 C -0.098 4.098 17 C -0.190 4.190 18 C 0.061 3.939 19 F -0.118 7.118 20 C 0.394 3.606 21 O -0.481 6.481 22 N -0.408 5.408 23 C 0.045 3.955 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.146 4.146 28 C -0.157 4.157 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.184 0.816 35 H 0.166 0.834 36 H 0.267 0.733 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.491 -1.196 7.577 11.443 hybrid contribution -0.051 0.645 -0.494 0.815 sum 8.441 -0.550 7.083 11.032 Atomic orbital electron populations 1.69456 1.07858 1.31372 1.36499 1.26037 0.95319 1.02813 0.89458 0.85247 0.78624 0.76944 0.78897 1.20578 1.22625 1.18635 1.20746 0.87199 0.96207 1.50753 0.88187 1.18681 0.90105 0.79401 0.76753 1.89834 1.67591 1.36173 1.55574 1.46209 1.05878 1.18178 1.61363 1.20273 0.96607 0.86223 0.92504 1.20204 0.94923 1.05417 0.94655 1.21227 0.93687 0.94506 0.98644 1.21533 1.01612 1.00529 0.91767 1.21388 0.91268 0.96202 1.00982 1.21366 0.98520 1.04812 0.94259 1.18128 0.78580 1.02230 0.94953 1.91587 1.33899 1.91064 1.95289 1.16609 0.81557 0.84462 0.77993 1.90804 1.67451 1.35192 1.54700 1.47318 1.10101 1.14839 1.68510 1.20973 0.79663 0.99499 0.95402 1.21861 0.98355 1.00280 0.95666 1.21472 0.92712 0.99977 1.00546 1.21564 1.01533 0.98182 0.94079 1.21481 0.93033 1.02766 0.97345 1.21747 0.97574 0.97631 0.98797 0.89363 0.87384 0.89473 0.84770 0.83001 0.81556 0.83447 0.73265 0.91620 0.92781 0.94592 0.91821 0.90763 0.89571 0.91883 0.91398 0.89684 0.91988 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.16 13.92 21.85 0.30 -39.86 16 2 C 0.08 4.11 5.52 85.33 0.47 4.58 16 3 Si 0.97 44.92 26.48 68.60 1.82 46.73 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -12.90 5.85 99.48 0.58 -12.32 16 7 C -0.51 -25.37 8.28 24.81 0.21 -25.16 16 8 H 0.10 4.84 5.34 -2.91 -0.02 4.82 16 9 C 0.54 26.57 7.06 86.33 0.61 27.18 16 10 O -0.60 -30.90 8.99 -4.20 -0.04 -30.94 16 11 N -0.57 -26.47 2.55 -781.51 -2.00 -28.47 16 12 C 0.17 6.68 4.83 85.63 0.41 7.10 16 13 C -0.15 -5.66 5.35 -19.82 -0.11 -5.77 16 14 C -0.06 -2.11 8.94 22.26 0.20 -1.91 16 15 C -0.14 -3.75 10.04 22.27 0.22 -3.53 16 16 C -0.08 -1.98 10.04 22.26 0.22 -1.76 16 17 C -0.17 -5.03 10.03 22.31 0.22 -4.81 16 18 C 0.08 3.01 7.25 22.38 0.16 3.18 16 19 F -0.14 -5.94 13.75 44.97 0.62 -5.32 16 20 C 0.69 32.37 7.81 179.05 1.40 33.77 16 21 O -0.60 -29.30 12.92 -3.89 -0.05 -29.35 16 22 N -0.73 -31.70 4.87 -457.85 -2.23 -33.93 16 23 C 0.15 5.27 2.49 44.99 0.11 5.38 16 24 C -0.12 -3.97 5.49 30.59 0.17 -3.80 16 25 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 26 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 27 C -0.11 -2.25 5.92 30.59 0.18 -2.06 16 28 C -0.12 -3.38 5.39 30.59 0.16 -3.21 16 29 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 30 H 0.11 4.07 6.14 -2.39 -0.01 4.06 16 31 H 0.09 3.52 7.18 -2.39 -0.02 3.50 16 32 H 0.13 4.75 6.73 -2.91 -0.02 4.73 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.41 18.89 4.73 -150.84 -0.71 18.17 16 37 H 0.07 2.47 7.52 -2.39 -0.02 2.45 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -62.16 371.38 3.60 -58.56 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: 0.16 Total: 37.85 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 5.01 Total: 24.73 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.92 Total: -102.26 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -0.09 Total: -60.29 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.62 Total: -5.32 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.82 Total: 46.73 kcal Total: -62.16 3.60 -58.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000171078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.253 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds