Wall clock time and date at job start Tue Mar 31 2020 05:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46820 * 239.99654 * 3 2 1 5 5 H 1.48504 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47304 * 119.99515 * 3 2 1 7 7 C 1.39862 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00127 * 187.72767 * 7 2 1 9 9 C 1.41134 * 120.00278 * 7.73688 * 7 2 1 10 10 C 1.40890 * 120.15397 * 212.11599 * 9 7 2 11 11 C 1.36337 * 119.83179 * 180.25104 * 10 9 7 12 12 C 1.39568 * 120.16667 * 359.48853 * 11 10 9 13 13 N 1.38854 * 119.84516 * 180.25625 * 12 11 10 14 14 S 1.65604 * 119.99785 * 133.15342 * 13 12 11 15 15 O 1.42098 * 106.40192 * 51.93234 * 14 13 12 16 16 O 1.42102 * 106.40033 * 184.85213 * 14 13 12 17 17 C 1.76205 * 107.21769 * 298.39331 * 14 13 12 18 18 C 1.38255 * 119.99931 * 118.08954 * 17 14 13 19 19 C 1.38212 * 120.00106 * 179.79249 * 18 17 14 20 20 C 1.38257 * 119.99583 * 0.45429 * 19 18 17 21 21 C 1.38210 * 120.00128 * 359.76981 * 20 19 18 22 22 C 1.38210 * 119.99668 * 298.35799 * 17 14 13 23 23 N 1.48017 * 120.00569 * 359.97438 * 22 17 14 24 24 O 1.21793 * 120.00216 * 186.35529 * 23 22 17 25 25 O 1.21803 * 119.99532 * 6.35260 * 23 22 17 26 26 C 1.39574 * 120.31247 * 0.28419 * 12 11 10 27 27 C 1.36339 * 120.15623 * 359.97438 * 26 12 11 28 28 H 0.97003 * 119.99622 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.08437 * 359.97438 * 10 9 7 30 30 H 1.08006 * 119.91599 * 179.77315 * 11 10 9 31 31 H 0.97001 * 120.00048 * 313.15640 * 13 12 11 32 32 H 1.07999 * 120.00041 * 359.97438 * 18 17 14 33 33 H 1.07999 * 120.00449 * 180.25386 * 19 18 17 34 34 H 1.07998 * 119.99865 * 179.79722 * 20 19 18 35 35 H 1.08005 * 120.00212 * 179.97438 * 21 20 19 36 36 H 1.07993 * 119.91966 * 179.97438 * 26 12 11 37 37 H 1.08002 * 120.07384 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0809 -1.2155 0.1263 9 6 1.3123 -2.4280 -0.1635 10 6 1.7773 -3.5997 0.4658 11 6 1.1027 -4.7727 0.2987 12 6 -0.0518 -4.8124 -0.4846 13 7 -0.7366 -6.0095 -0.6459 14 16 -2.3825 -6.0523 -0.4681 15 8 -2.9033 -5.0298 -1.3062 16 8 -2.7627 -7.4170 -0.5790 17 6 -2.7409 -5.5689 1.1880 18 6 -3.4920 -4.4336 1.4296 19 6 -3.7768 -4.0567 2.7285 20 6 -3.3026 -4.8099 3.7864 21 6 -2.5479 -5.9423 3.5451 22 6 -2.2665 -6.3216 2.2456 23 7 -1.4578 -7.5341 1.9872 24 8 -1.1376 -8.2608 2.9107 25 8 -1.1126 -7.8051 0.8510 26 6 -0.5209 -3.6546 -1.1070 27 6 0.1465 -2.4757 -0.9530 28 1 -0.4850 0.8401 -0.0004 29 1 2.6683 -3.5698 1.0753 30 1 1.4600 -5.6725 0.7775 31 1 -0.2509 -6.8207 -0.8626 32 1 -3.8587 -3.8428 0.6032 33 1 -4.3670 -3.1722 2.9171 34 1 -3.5224 -4.5137 4.8015 35 1 -2.1771 -6.5305 4.3716 36 1 -1.4146 -3.6926 -1.7120 37 1 -0.2179 -1.5805 -1.4350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000328842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:44 Heat of formation + Delta-G solvation = -8.436114 kcal Electronic energy + Delta-G solvation = -28848.779836 eV Core-core repulsion = 24687.102163 eV Total energy + Delta-G solvation = -4161.677672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.32040 -39.48344 -38.15046 -37.15435 -36.42112 -35.58689 -34.81510 -32.85504 -32.30373 -31.78536 -29.67092 -28.78613 -26.73317 -24.81937 -23.76523 -22.75723 -21.32224 -20.98709 -19.93636 -18.98965 -18.76795 -17.64452 -17.55727 -17.44914 -17.14640 -16.59571 -15.70219 -15.59973 -15.28085 -14.74854 -14.59217 -14.13001 -13.69322 -13.46308 -12.99913 -12.85284 -12.49736 -12.36039 -12.27963 -11.86380 -11.82268 -11.72791 -11.59807 -11.41811 -11.31288 -11.22509 -11.10130 -10.88594 -10.86696 -10.58955 -10.23880 -9.98859 -9.86063 -9.75357 -9.36256 -9.02340 -7.74272 -7.20031 -6.85543 -4.49391 -0.45104 0.43146 0.61945 1.23395 1.24642 2.58553 2.89991 2.91674 2.99177 3.01842 3.06617 3.27087 3.83310 3.85202 4.06900 4.28883 4.49529 4.54858 4.62983 4.81870 5.03967 5.20353 5.37020 5.46626 5.55301 5.73541 6.00126 6.07975 6.16233 6.28124 6.32569 6.83926 6.91512 7.03405 7.09300 7.37049 7.47354 7.60133 7.76291 7.89791 8.02381 8.11640 8.47582 8.72844 8.79743 10.08668 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.004008 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.845769 B = 6984.204919 C = 7317.812149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.110 3.890 10 C -0.210 4.210 11 C -0.091 4.091 12 C -0.010 4.010 13 N -1.010 6.010 14 S 2.681 3.319 15 O -0.949 6.949 16 O -0.953 6.953 17 C -0.615 4.615 18 C -0.012 4.012 19 C -0.086 4.086 20 C -0.073 4.073 21 C -0.072 4.072 22 C 0.044 3.956 23 N 0.021 4.979 24 O -0.145 6.145 25 O -0.142 6.142 26 C -0.121 4.121 27 C -0.141 4.141 28 H 0.282 0.718 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.422 0.578 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 -5.006 6.590 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.107 3.893 10 C -0.231 4.231 11 C -0.113 4.113 12 C -0.107 4.107 13 N -0.767 5.767 14 S 2.767 3.233 15 O -0.939 6.939 16 O -0.943 6.943 17 C -0.697 4.697 18 C -0.031 4.031 19 C -0.105 4.105 20 C -0.092 4.092 21 C -0.092 4.092 22 C -0.039 4.039 23 N 0.540 4.460 24 O -0.363 6.363 25 O -0.357 6.357 26 C -0.142 4.142 27 C -0.161 4.161 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.261 0.739 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.142 0.858 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.622 -4.409 6.173 11.484 hybrid contribution 1.031 0.392 0.856 1.396 sum -7.590 -4.017 7.029 11.097 Atomic orbital electron populations 1.69793 1.07397 1.29394 1.35930 1.25919 0.94932 1.01336 0.92325 0.86265 0.79952 0.79934 0.79984 1.18768 1.20276 1.19043 1.19550 0.95443 0.90323 1.43209 0.90306 1.17760 0.91523 0.92078 0.87921 1.20738 1.03080 0.93461 1.05817 1.20356 0.96047 0.97039 0.97822 1.16924 0.99871 0.84616 1.09264 1.52356 1.25321 1.15759 1.83219 1.03196 0.73446 0.73249 0.73427 1.93562 1.78575 1.59650 1.62102 1.93595 1.82084 1.33140 1.85510 1.31335 1.08176 1.04389 1.25770 1.21195 0.91358 0.91313 0.99238 1.21798 0.97141 0.99221 0.92325 1.21479 0.94339 0.92606 1.00788 1.21145 0.96209 0.97119 0.94694 1.20488 0.99402 0.88138 0.95827 1.43640 0.99852 1.01742 1.00720 1.94504 1.58109 1.46508 1.37156 1.94469 1.56862 1.77020 1.07336 1.21189 1.00970 0.92724 0.99341 1.21052 0.97959 0.96313 1.00756 0.90707 0.88487 0.89034 0.73929 0.81660 0.83038 0.82954 0.82402 0.85765 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.36 10.89 55.54 0.60 -18.76 16 2 C 0.07 1.70 5.28 -17.34 -0.09 1.61 16 3 Si 0.91 17.69 29.57 -169.99 -5.03 12.67 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.31 9.03 -37.88 -0.34 -11.65 16 8 H 0.08 1.88 7.86 -52.49 -0.41 1.46 16 9 C 0.11 2.76 5.53 -106.80 -0.59 2.17 16 10 C -0.21 -4.83 9.74 -39.26 -0.38 -5.21 16 11 C -0.09 -1.92 9.90 -39.77 -0.39 -2.32 16 12 C -0.01 -0.22 6.13 -83.69 -0.51 -0.73 16 13 N -1.01 -18.50 4.32 32.51 0.14 -18.36 16 14 S 2.68 48.22 4.80 -107.50 -0.52 47.70 16 15 O -0.95 -18.33 14.09 -57.17 -0.81 -19.13 16 16 O -0.95 -18.46 15.42 -67.21 -1.04 -19.49 16 17 C -0.62 -9.94 5.75 -39.59 -0.23 -10.16 16 18 C -0.01 -0.16 9.55 -39.58 -0.38 -0.54 16 19 C -0.09 -0.89 10.05 -39.58 -0.40 -1.29 16 20 C -0.07 -0.69 10.05 -39.58 -0.40 -1.09 16 21 C -0.07 -0.85 9.56 -39.58 -0.38 -1.23 16 22 C 0.04 0.69 6.81 -79.95 -0.54 0.15 16 23 N 0.02 0.36 4.45 33.96 0.15 0.51 16 24 O -0.15 -2.36 18.47 -29.46 -0.54 -2.90 16 25 O -0.14 -2.57 11.71 -37.26 -0.44 -3.01 16 26 C -0.12 -2.73 9.14 -39.77 -0.36 -3.10 16 27 C -0.14 -3.45 8.58 -39.27 -0.34 -3.79 16 28 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 29 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.42 6.94 7.74 -34.48 -0.27 6.67 16 32 H 0.17 2.10 7.34 -52.49 -0.39 1.72 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.16 1.49 7.63 -52.48 -0.40 1.09 16 36 H 0.12 2.74 5.71 -52.49 -0.30 2.44 16 37 H 0.13 3.16 6.34 -52.49 -0.33 2.83 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -30.30 333.28 -10.71 -41.01 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -2.92 Total: 11.93 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: -5.34 Total: -37.18 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.90 Total: -36.61 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -2.82 Total: -44.54 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 48.22 SS G_CDS: -0.52 Total: 47.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.30 -10.71 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000328842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.573 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds