Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46820 * 239.99654 * 3 2 1 5 5 H 1.48504 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47304 * 119.99515 * 3 2 1 7 7 C 1.39862 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00127 * 187.72767 * 7 2 1 9 9 C 1.41134 * 120.00278 * 7.73688 * 7 2 1 10 10 C 1.40890 * 120.15397 * 212.11599 * 9 7 2 11 11 C 1.36337 * 119.83179 * 180.25104 * 10 9 7 12 12 C 1.39568 * 120.16667 * 359.48853 * 11 10 9 13 13 N 1.38854 * 119.84516 * 180.25625 * 12 11 10 14 14 S 1.65604 * 119.99785 * 133.15342 * 13 12 11 15 15 O 1.42098 * 106.40192 * 51.93234 * 14 13 12 16 16 O 1.42102 * 106.40033 * 184.85213 * 14 13 12 17 17 C 1.76205 * 107.21769 * 298.39331 * 14 13 12 18 18 C 1.38255 * 119.99931 * 118.08954 * 17 14 13 19 19 C 1.38212 * 120.00106 * 179.79249 * 18 17 14 20 20 C 1.38257 * 119.99583 * 0.45429 * 19 18 17 21 21 C 1.38210 * 120.00128 * 359.76981 * 20 19 18 22 22 C 1.38210 * 119.99668 * 298.35799 * 17 14 13 23 23 N 1.48017 * 120.00569 * 359.97438 * 22 17 14 24 24 O 1.21793 * 120.00216 * 186.35529 * 23 22 17 25 25 O 1.21803 * 119.99532 * 6.35260 * 23 22 17 26 26 C 1.39574 * 120.31247 * 0.28419 * 12 11 10 27 27 C 1.36339 * 120.15623 * 359.97438 * 26 12 11 28 28 H 0.97003 * 119.99622 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.08437 * 359.97438 * 10 9 7 30 30 H 1.08006 * 119.91599 * 179.77315 * 11 10 9 31 31 H 0.97001 * 120.00048 * 313.15640 * 13 12 11 32 32 H 1.07999 * 120.00041 * 359.97438 * 18 17 14 33 33 H 1.07999 * 120.00449 * 180.25386 * 19 18 17 34 34 H 1.07998 * 119.99865 * 179.79722 * 20 19 18 35 35 H 1.08005 * 120.00212 * 179.97438 * 21 20 19 36 36 H 1.07993 * 119.91966 * 179.97438 * 26 12 11 37 37 H 1.08002 * 120.07384 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0809 -1.2155 0.1263 9 6 1.3123 -2.4280 -0.1635 10 6 1.7773 -3.5997 0.4658 11 6 1.1027 -4.7727 0.2987 12 6 -0.0518 -4.8124 -0.4846 13 7 -0.7366 -6.0095 -0.6459 14 16 -2.3825 -6.0523 -0.4681 15 8 -2.9033 -5.0298 -1.3062 16 8 -2.7627 -7.4170 -0.5790 17 6 -2.7409 -5.5689 1.1880 18 6 -3.4920 -4.4336 1.4296 19 6 -3.7768 -4.0567 2.7285 20 6 -3.3026 -4.8099 3.7864 21 6 -2.5479 -5.9423 3.5451 22 6 -2.2665 -6.3216 2.2456 23 7 -1.4578 -7.5341 1.9872 24 8 -1.1376 -8.2608 2.9107 25 8 -1.1126 -7.8051 0.8510 26 6 -0.5209 -3.6546 -1.1070 27 6 0.1465 -2.4757 -0.9530 28 1 -0.4850 0.8401 -0.0004 29 1 2.6683 -3.5698 1.0753 30 1 1.4600 -5.6725 0.7775 31 1 -0.2509 -6.8207 -0.8626 32 1 -3.8587 -3.8428 0.6032 33 1 -4.3670 -3.1722 2.9171 34 1 -3.5224 -4.5137 4.8015 35 1 -2.1771 -6.5305 4.3716 36 1 -1.4146 -3.6926 -1.7120 37 1 -0.2179 -1.5805 -1.4350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000328842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -25.946000 kcal Electronic energy + Delta-G solvation = -28849.539121 eV Core-core repulsion = 24687.102163 eV Total energy + Delta-G solvation = -4162.436958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.54199 -40.46491 -39.89726 -38.57751 -37.77187 -37.08902 -36.49609 -34.56245 -33.31083 -32.76711 -31.47993 -30.54391 -27.86985 -26.58244 -24.76707 -23.86831 -23.10605 -22.70244 -21.15575 -20.32993 -20.01896 -19.25499 -18.89060 -18.82685 -18.67141 -18.04657 -17.04726 -16.82617 -16.52487 -15.95585 -15.82225 -15.73905 -15.36367 -14.63981 -14.49876 -14.18386 -14.05073 -13.85419 -13.57692 -13.40251 -13.29731 -13.19732 -13.09588 -12.85114 -12.81388 -12.53367 -12.46919 -12.40651 -12.30293 -12.15930 -11.87723 -11.57995 -11.10565 -10.93115 -10.76098 -10.71338 -9.55817 -8.97990 -8.59885 -6.34321 -1.58619 -0.83883 -0.46752 0.10133 0.12869 0.84648 1.08416 1.42031 1.51745 1.52622 1.77417 2.03659 2.22852 2.48037 2.72668 2.98505 3.37035 3.58502 3.63486 3.76259 3.81834 3.95401 4.31246 4.35855 4.40909 4.49362 4.55162 4.75923 4.87713 4.93969 5.04095 5.12452 5.24500 5.32310 5.34327 5.65738 5.75456 5.98247 6.06875 6.21736 6.30382 6.42650 6.65220 6.91303 6.97792 8.36633 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.004008 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.845769 B = 6984.204919 C = 7317.812149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.083 3.917 10 C -0.217 4.217 11 C -0.091 4.091 12 C 0.009 3.991 13 N -1.014 6.014 14 S 2.699 3.301 15 O -0.972 6.972 16 O -0.971 6.971 17 C -0.642 4.642 18 C -0.029 4.029 19 C -0.076 4.076 20 C -0.052 4.052 21 C -0.067 4.067 22 C 0.015 3.985 23 N 0.019 4.981 24 O -0.125 6.125 25 O -0.191 6.191 26 C -0.127 4.127 27 C -0.157 4.157 28 H 0.288 0.712 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.429 0.571 32 H 0.165 0.835 33 H 0.193 0.807 34 H 0.207 0.793 35 H 0.185 0.815 36 H 0.125 0.875 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -4.273 9.530 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.521 4.521 8 H 0.097 0.903 9 C 0.080 3.920 10 C -0.237 4.237 11 C -0.113 4.113 12 C -0.087 4.087 13 N -0.770 5.770 14 S 2.789 3.211 15 O -0.962 6.962 16 O -0.961 6.961 17 C -0.728 4.728 18 C -0.048 4.048 19 C -0.095 4.095 20 C -0.070 4.070 21 C -0.087 4.087 22 C -0.068 4.068 23 N 0.535 4.465 24 O -0.350 6.350 25 O -0.394 6.394 26 C -0.149 4.149 27 C -0.177 4.177 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.269 0.731 32 H 0.182 0.818 33 H 0.211 0.789 34 H 0.224 0.776 35 H 0.202 0.798 36 H 0.143 0.857 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.378 -3.691 8.963 13.488 hybrid contribution 1.081 0.029 0.152 1.092 sum -8.298 -3.662 9.116 12.859 Atomic orbital electron populations 1.69851 1.08656 1.30545 1.36472 1.26702 0.95670 1.04248 0.91383 0.85223 0.78652 0.75750 0.79923 1.18713 1.19304 1.18476 1.19773 0.95661 0.91298 1.45342 0.90299 1.18037 0.92117 0.93116 0.88766 1.20906 1.03524 0.93497 1.05822 1.20538 0.95756 0.97376 0.97620 1.16878 0.99443 0.84843 1.07551 1.52301 1.25523 1.15157 1.84002 1.02037 0.72675 0.72521 0.73916 1.93530 1.78724 1.60039 1.63904 1.93570 1.82041 1.34123 1.86379 1.30808 1.11315 1.06588 1.24096 1.21499 0.91323 0.90635 1.01375 1.22356 0.96145 1.00143 0.90808 1.22179 0.91416 0.90441 1.02994 1.21720 0.95447 0.97851 0.93634 1.20762 1.00820 0.87970 0.97277 1.43928 0.99833 1.02262 1.00484 1.94454 1.57194 1.46544 1.36827 1.94464 1.58953 1.78130 1.07849 1.21235 1.01012 0.92951 0.99662 1.20953 0.98730 0.96368 1.01629 0.90092 0.87503 0.86846 0.73130 0.81765 0.78950 0.77627 0.79757 0.85710 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.84 10.89 21.82 0.24 -40.60 16 2 C 0.03 1.63 5.28 85.22 0.45 2.08 16 3 Si 0.98 36.20 29.57 68.60 2.03 38.23 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 7 C -0.49 -24.99 9.03 23.37 0.21 -24.77 16 8 H 0.08 3.85 7.86 -2.91 -0.02 3.82 16 9 C 0.08 4.24 5.53 -21.27 -0.12 4.12 16 10 C -0.22 -10.08 9.74 22.48 0.22 -9.86 16 11 C -0.09 -3.86 9.90 22.15 0.22 -3.64 16 12 C 0.01 0.38 6.13 38.67 0.24 0.62 16 13 N -1.01 -37.89 4.32 -51.06 -0.22 -38.11 16 14 S 2.70 99.27 4.80 -56.49 -0.27 99.00 16 15 O -0.97 -38.74 14.09 -128.00 -1.80 -40.54 16 16 O -0.97 -38.66 15.42 -118.40 -1.83 -40.48 16 17 C -0.64 -20.33 5.75 22.27 0.13 -20.20 16 18 C -0.03 -0.74 9.55 22.27 0.21 -0.52 16 19 C -0.08 -1.25 10.05 22.27 0.22 -1.03 16 20 C -0.05 -0.70 10.05 22.27 0.22 -0.47 16 21 C -0.07 -1.32 9.56 22.27 0.21 -1.11 16 22 C 0.02 0.44 6.81 36.37 0.25 0.69 16 23 N 0.02 0.63 4.45 -46.47 -0.21 0.42 16 24 O -0.12 -3.86 18.47 18.89 0.35 -3.51 16 25 O -0.19 -6.99 11.71 26.34 0.31 -6.68 16 26 C -0.13 -5.94 9.14 22.15 0.20 -5.73 16 27 C -0.16 -7.98 8.58 22.47 0.19 -7.79 16 28 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 29 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 30 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.43 14.53 7.74 -96.74 -0.75 13.78 16 32 H 0.16 4.13 7.34 -2.91 -0.02 4.11 16 33 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.19 2.60 7.63 -2.91 -0.02 2.58 16 36 H 0.13 5.73 5.71 -2.91 -0.02 5.71 16 37 H 0.11 5.77 6.34 -2.91 -0.02 5.76 16 Total: -1.00 -69.01 333.28 1.87 -67.14 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.41 Total: 32.75 kcal Atomic # 6 Polarization: -70.48 SS G_CDS: 2.86 Total: -67.61 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -0.19 Total: -78.30 kcal Atomic # 8 Polarization: -88.24 SS G_CDS: -2.97 Total: -91.22 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Atomic # 16 Polarization: 99.27 SS G_CDS: -0.27 Total: 99.00 kcal Total: -69.01 1.87 -67.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000328842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.197 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds