Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47472 * 2 1 4 4 C 1.53005 * 109.46964 * 239.99815 * 2 1 3 5 5 O 1.45200 * 109.47153 * 120.00301 * 2 1 3 6 6 C 1.34226 * 117.00223 * 59.99867 * 5 2 1 7 7 O 1.20833 * 120.00013 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00323 * 180.02562 * 6 5 2 9 9 O 1.42898 * 109.47462 * 180.02562 * 8 6 5 10 10 C 1.35688 * 117.00425 * 179.97438 * 9 8 6 11 11 C 1.39193 * 119.87478 * 179.97438 * 10 9 8 12 12 C 1.36595 * 120.12720 * 180.02562 * 11 10 9 13 13 C 1.40256 * 119.87087 * 0.02562 * 12 11 10 14 14 C 1.46738 * 120.12739 * 180.02562 * 13 12 11 15 15 N 1.30695 * 120.00222 * 179.97438 * 14 13 12 16 16 N 1.40098 * 120.00214 * 179.97438 * 15 14 13 17 17 C 1.34770 * 120.00226 * 180.02562 * 16 15 14 18 18 O 1.21981 * 120.00505 * 0.02562 * 17 16 15 19 19 C 1.40688 * 120.00446 * 179.97438 * 17 16 15 20 20 H 1.08005 * 119.99396 * 0.02562 * 19 17 16 21 21 C 1.40203 * 120.00464 * 180.02562 * 19 17 16 22 22 N 1.30607 * 119.99661 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00042 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46823 * 120.00119 * 23 21 19 26 26 H 1.48499 * 109.47200 * 239.99818 * 23 21 19 27 27 C 1.40264 * 119.75064 * 359.97438 * 13 12 11 28 28 C 1.36594 * 119.86691 * 0.02832 * 27 13 12 29 29 H 1.09005 * 109.47394 * 299.99931 * 1 2 3 30 30 H 1.08999 * 109.47258 * 59.99652 * 1 2 3 31 31 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47854 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47164 * 300.00405 * 3 2 1 34 34 H 1.09010 * 109.47145 * 59.99918 * 3 2 1 35 35 H 1.08994 * 109.47210 * 300.00396 * 4 2 1 36 36 H 1.08999 * 109.46698 * 60.00190 * 4 2 1 37 37 H 1.09000 * 109.46782 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.47655 * 59.99563 * 8 6 5 39 39 H 1.09006 * 109.46808 * 299.99535 * 8 6 5 40 40 H 1.08000 * 119.93810 * 359.97438 * 11 10 9 41 41 H 1.08005 * 120.06218 * 179.73065 * 12 11 10 42 42 H 1.08005 * 119.99608 * 359.97438 * 14 13 12 43 43 H 0.97002 * 119.99852 * 0.02562 * 16 15 14 44 44 H 0.96997 * 119.99346 * 180.02562 * 22 21 19 45 45 H 1.07995 * 120.06715 * 180.02562 * 27 13 12 46 46 H 1.07993 * 119.93381 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9558 -2.5026 0.5082 8 6 2.1173 -2.7435 2.5440 9 8 1.6069 -4.0766 2.4789 10 6 1.9348 -4.9123 3.4964 11 6 1.4695 -6.2241 3.4936 12 6 1.7960 -7.0696 4.5156 13 6 2.6013 -6.6133 5.5694 14 6 2.9560 -7.5169 6.6698 15 7 3.7069 -7.0894 7.6503 16 7 4.0451 -7.9519 8.7012 17 6 4.8191 -7.5109 9.7125 18 8 5.2249 -6.3605 9.7132 19 6 5.1582 -8.3768 10.7682 20 1 4.7986 -9.3953 10.7679 21 6 5.9630 -7.9179 11.8205 22 7 6.3974 -6.6862 11.8211 23 14 6.4138 -9.0680 13.2218 24 1 5.7999 -10.3994 12.9862 25 1 7.8905 -9.2084 13.2912 26 1 5.9089 -8.5101 14.5020 27 6 3.0673 -5.2904 5.5669 28 6 2.7344 -4.4539 4.5397 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 1.7532 -2.2585 3.4498 39 1 3.2068 -2.7724 2.5603 40 1 0.8484 -6.5740 2.6823 41 1 1.4308 -8.0860 4.5146 42 1 2.5963 -8.5353 6.6695 43 1 3.7221 -8.8666 8.7010 44 1 6.9544 -6.3688 12.5490 45 1 3.6881 -4.9338 6.3755 46 1 3.0923 -3.4349 4.5369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000440623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -91.310304 kcal Electronic energy + Delta-G solvation = -28454.546051 eV Core-core repulsion = 24118.188003 eV Total energy + Delta-G solvation = -4336.358049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33157 -40.15602 -38.09588 -37.52907 -37.01729 -35.04519 -34.56850 -32.68954 -31.62155 -31.15475 -29.76247 -28.40247 -27.86092 -27.84551 -26.45708 -23.53821 -23.33760 -21.97649 -20.65547 -20.05534 -19.67652 -18.51195 -17.65555 -17.49409 -17.07360 -16.95126 -16.28673 -15.69435 -15.63957 -15.48237 -15.10864 -14.65044 -14.45645 -14.12711 -14.04601 -13.85458 -13.37335 -13.36066 -12.95198 -12.90394 -12.89457 -12.68753 -12.56783 -12.42197 -12.36867 -11.94844 -11.87233 -11.64228 -11.62390 -11.41306 -11.21677 -10.85523 -10.84315 -10.69341 -10.67892 -10.36311 -10.31866 -9.52087 -9.07336 -9.04623 -8.49225 -7.78997 -7.17230 -6.42451 -4.97538 1.07845 1.48501 1.74448 1.76916 2.82654 3.03223 3.09624 3.14719 3.25283 3.70304 4.01696 4.07637 4.09847 4.24364 4.28019 4.42689 4.43241 4.58491 4.62606 4.84810 4.89282 5.02856 5.08586 5.13216 5.22404 5.24454 5.33265 5.37707 5.38239 5.44361 5.55706 5.68050 5.73899 5.80305 5.82366 5.83890 6.06032 6.09864 6.29408 6.37916 6.60118 6.68715 6.85762 7.18724 7.22830 7.40638 7.81384 7.96819 8.65404 8.74280 9.27144 10.36609 10.61877 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.001477 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.185841 B =18947.371757 C =19974.198930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.119 3.881 3 C -0.141 4.141 4 C -0.185 4.185 5 O -0.347 6.347 6 C 0.468 3.532 7 O -0.480 6.480 8 C 0.066 3.934 9 O -0.296 6.296 10 C 0.118 3.882 11 C -0.144 4.144 12 C -0.069 4.069 13 C -0.051 4.051 14 C 0.018 3.982 15 N -0.189 5.189 16 N -0.588 5.588 17 C 0.557 3.443 18 O -0.554 6.554 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.088 3.912 22 N -0.744 5.744 23 Si 0.917 3.083 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.051 4.051 28 C -0.206 4.206 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.369 0.631 44 H 0.274 0.726 45 H 0.141 0.859 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 10.093 -22.738 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.083 3.917 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.266 6.266 6 C 0.309 3.691 7 O -0.366 6.366 8 C -0.011 4.011 9 O -0.210 6.210 10 C 0.072 3.928 11 C -0.163 4.163 12 C -0.089 4.089 13 C -0.054 4.054 14 C -0.191 4.191 15 N 0.001 4.999 16 N -0.334 5.334 17 C 0.366 3.634 18 O -0.434 6.434 19 C -0.573 4.573 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.371 5.371 23 Si 0.741 3.259 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.072 4.072 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.124 0.876 43 H 0.205 0.795 44 H 0.085 0.915 45 H 0.159 0.841 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.682 11.597 -22.526 27.122 hybrid contribution -0.273 -1.681 0.522 1.781 sum -9.955 9.916 -22.003 26.107 Atomic orbital electron populations 1.22511 0.93794 1.04911 1.02988 1.22263 0.94573 0.92259 0.82577 1.21868 1.02419 0.92274 1.03278 1.22513 1.01880 1.03212 0.96596 1.86500 1.69950 1.24383 1.45718 1.22861 0.78117 0.81070 0.87010 1.90625 1.33880 1.69666 1.42433 1.21896 1.00921 0.82711 0.95530 1.85976 1.70903 1.20057 1.44017 1.19186 0.96135 0.90243 0.87224 1.19980 1.04522 0.90772 1.01038 1.20796 0.96468 0.99399 0.92263 1.18516 0.99468 0.93317 0.94055 1.23887 1.02481 0.97702 0.94993 1.74792 1.06691 1.22687 0.95768 1.48080 1.53739 1.11225 1.20355 1.16810 0.77919 0.88827 0.79867 1.90721 1.55601 1.19553 1.77477 1.19789 1.33032 0.98975 1.05488 0.91026 1.25772 0.93968 0.95194 0.98639 1.70024 1.23054 1.15144 1.28909 0.86159 0.78826 0.80710 0.80226 1.18500 1.19821 1.19827 1.21143 0.96532 0.92270 0.97212 1.20972 1.03883 1.01316 0.96321 0.91784 0.90830 0.89724 0.91271 0.90140 0.91268 0.89724 0.90831 0.91786 0.87519 0.87532 0.85087 0.84917 0.87610 0.79535 0.91511 0.84107 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 8.37 37.15 0.31 -1.02 16 2 C 0.12 0.88 1.13 -90.62 -0.10 0.77 16 3 C -0.14 -0.72 8.85 37.15 0.33 -0.39 16 4 C -0.18 -1.33 8.37 37.16 0.31 -1.02 16 5 O -0.35 -3.10 9.89 -39.25 -0.39 -3.49 16 6 C 0.47 4.71 7.34 36.00 0.26 4.97 16 7 O -0.48 -5.98 12.00 -25.48 -0.31 -6.28 16 8 C 0.07 0.59 5.32 36.00 0.19 0.78 16 9 O -0.30 -3.53 9.66 -38.72 -0.37 -3.90 16 10 C 0.12 1.45 6.71 -38.87 -0.26 1.19 16 11 C -0.14 -1.70 9.93 -39.82 -0.40 -2.09 16 12 C -0.07 -0.82 9.76 -39.42 -0.38 -1.20 16 13 C -0.05 -0.76 5.88 -104.94 -0.62 -1.38 16 14 C 0.02 0.31 10.75 -14.60 -0.16 0.15 16 15 N -0.19 -4.19 10.19 32.13 0.33 -3.86 16 16 N -0.59 -13.94 6.26 28.92 0.18 -13.76 16 17 C 0.56 16.10 7.65 -15.34 -0.12 15.98 16 18 O -0.55 -18.34 15.20 4.94 0.08 -18.27 16 19 C -0.54 -14.73 9.26 -37.92 -0.35 -15.08 16 20 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 21 C 0.09 2.36 5.50 -17.33 -0.10 2.27 16 22 N -0.74 -21.61 11.71 55.56 0.65 -20.96 16 23 Si 0.92 19.18 29.56 -169.99 -5.02 14.15 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.05 -0.78 9.54 -39.41 -0.38 -1.15 16 28 C -0.21 -2.57 8.97 -39.82 -0.36 -2.93 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.79 5.89 -51.93 -0.31 0.49 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.08 0.79 5.89 -51.93 -0.31 0.49 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.11 0.75 7.65 -51.93 -0.40 0.35 16 39 H 0.11 0.75 7.65 -51.93 -0.40 0.35 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.11 1.48 8.03 -52.48 -0.42 1.06 16 43 H 0.37 7.34 8.62 -182.60 -1.57 5.76 16 44 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 45 H 0.14 2.43 7.55 -52.49 -0.40 2.03 16 46 H 0.13 1.26 6.27 -52.49 -0.33 0.93 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -36.67 395.90 -8.18 -44.85 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.48 Total: 5.71 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.81 Total: -0.17 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 1.16 Total: -38.58 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.99 Total: -31.94 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.67 -8.18 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000440623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.460 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds