Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47472 * 2 1 4 4 C 1.53005 * 109.46964 * 239.99815 * 2 1 3 5 5 O 1.45200 * 109.47153 * 120.00301 * 2 1 3 6 6 C 1.34226 * 117.00223 * 59.99867 * 5 2 1 7 7 O 1.20833 * 120.00013 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00323 * 180.02562 * 6 5 2 9 9 O 1.42898 * 109.47462 * 180.02562 * 8 6 5 10 10 C 1.35688 * 117.00425 * 179.97438 * 9 8 6 11 11 C 1.39193 * 119.87478 * 179.97438 * 10 9 8 12 12 C 1.36595 * 120.12720 * 180.02562 * 11 10 9 13 13 C 1.40256 * 119.87087 * 0.02562 * 12 11 10 14 14 C 1.46738 * 120.12739 * 180.02562 * 13 12 11 15 15 N 1.30695 * 120.00222 * 179.97438 * 14 13 12 16 16 N 1.40098 * 120.00214 * 179.97438 * 15 14 13 17 17 C 1.34770 * 120.00226 * 180.02562 * 16 15 14 18 18 O 1.21981 * 120.00505 * 0.02562 * 17 16 15 19 19 C 1.40688 * 120.00446 * 179.97438 * 17 16 15 20 20 H 1.08005 * 119.99396 * 0.02562 * 19 17 16 21 21 C 1.40203 * 120.00464 * 180.02562 * 19 17 16 22 22 N 1.30607 * 119.99661 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00042 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46823 * 120.00119 * 23 21 19 26 26 H 1.48499 * 109.47200 * 239.99818 * 23 21 19 27 27 C 1.40264 * 119.75064 * 359.97438 * 13 12 11 28 28 C 1.36594 * 119.86691 * 0.02832 * 27 13 12 29 29 H 1.09005 * 109.47394 * 299.99931 * 1 2 3 30 30 H 1.08999 * 109.47258 * 59.99652 * 1 2 3 31 31 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47854 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47164 * 300.00405 * 3 2 1 34 34 H 1.09010 * 109.47145 * 59.99918 * 3 2 1 35 35 H 1.08994 * 109.47210 * 300.00396 * 4 2 1 36 36 H 1.08999 * 109.46698 * 60.00190 * 4 2 1 37 37 H 1.09000 * 109.46782 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.47655 * 59.99563 * 8 6 5 39 39 H 1.09006 * 109.46808 * 299.99535 * 8 6 5 40 40 H 1.08000 * 119.93810 * 359.97438 * 11 10 9 41 41 H 1.08005 * 120.06218 * 179.73065 * 12 11 10 42 42 H 1.08005 * 119.99608 * 359.97438 * 14 13 12 43 43 H 0.97002 * 119.99852 * 0.02562 * 16 15 14 44 44 H 0.96997 * 119.99346 * 180.02562 * 22 21 19 45 45 H 1.07995 * 120.06715 * 180.02562 * 27 13 12 46 46 H 1.07993 * 119.93381 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3378 7 8 0.9558 -2.5026 0.5082 8 6 2.1173 -2.7435 2.5440 9 8 1.6069 -4.0766 2.4789 10 6 1.9348 -4.9123 3.4964 11 6 1.4695 -6.2241 3.4936 12 6 1.7960 -7.0696 4.5156 13 6 2.6013 -6.6133 5.5694 14 6 2.9560 -7.5169 6.6698 15 7 3.7069 -7.0894 7.6503 16 7 4.0451 -7.9519 8.7012 17 6 4.8191 -7.5109 9.7125 18 8 5.2249 -6.3605 9.7132 19 6 5.1582 -8.3768 10.7682 20 1 4.7986 -9.3953 10.7679 21 6 5.9630 -7.9179 11.8205 22 7 6.3974 -6.6862 11.8211 23 14 6.4138 -9.0680 13.2218 24 1 5.7999 -10.3994 12.9862 25 1 7.8905 -9.2084 13.2912 26 1 5.9089 -8.5101 14.5020 27 6 3.0673 -5.2904 5.5669 28 6 2.7344 -4.4539 4.5397 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 1.7532 -2.2585 3.4498 39 1 3.2068 -2.7724 2.5603 40 1 0.8484 -6.5740 2.6823 41 1 1.4308 -8.0860 4.5146 42 1 2.5963 -8.5353 6.6695 43 1 3.7221 -8.8666 8.7010 44 1 6.9544 -6.3688 12.5490 45 1 3.6881 -4.9338 6.3755 46 1 3.0923 -3.4349 4.5369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000440623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -115.553221 kcal Electronic energy + Delta-G solvation = -28455.597303 eV Core-core repulsion = 24118.188003 eV Total energy + Delta-G solvation = -4337.409300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08744 -41.10495 -39.62561 -38.88271 -37.90376 -36.71397 -35.18767 -34.71686 -33.14441 -32.22460 -30.91067 -29.62719 -28.41187 -28.32337 -28.28353 -24.77886 -24.25151 -22.96899 -22.14661 -21.28368 -20.75246 -19.54314 -19.31730 -18.39798 -17.84196 -17.77461 -17.64000 -17.55627 -16.62469 -16.40195 -16.26035 -15.79093 -15.30949 -15.24749 -15.16926 -15.05967 -14.68209 -14.61202 -14.34760 -13.98163 -13.80095 -13.41684 -13.30103 -13.25872 -13.03330 -12.98550 -12.97403 -12.91291 -12.74247 -12.70703 -12.49229 -12.23384 -12.02690 -11.98452 -11.84313 -11.46857 -11.07517 -11.01293 -10.95223 -10.07896 -9.97882 -9.94308 -8.66291 -8.42560 -7.09124 -0.07888 0.46334 1.00391 1.01656 1.36735 1.39767 1.57009 1.59542 2.08045 2.36544 2.42368 2.45458 2.92897 3.40061 3.65256 3.69297 3.74347 3.78587 3.82929 3.91267 3.94096 3.97733 4.02843 4.32110 4.39812 4.53635 4.57903 4.62779 4.66001 4.73793 4.78596 4.85335 4.85700 4.99382 5.10754 5.15227 5.19768 5.22963 5.24565 5.25894 5.42267 5.43884 5.65652 5.68202 5.81985 6.03564 6.25624 6.65758 6.68262 6.96601 7.46837 8.41776 8.59516 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.001477 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.185841 B =18947.371757 C =19974.198930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.349 6.349 6 C 0.469 3.531 7 O -0.508 6.508 8 C 0.058 3.942 9 O -0.307 6.307 10 C 0.131 3.869 11 C -0.149 4.149 12 C -0.042 4.042 13 C -0.090 4.090 14 C 0.070 3.930 15 N -0.268 5.268 16 N -0.596 5.596 17 C 0.544 3.456 18 O -0.617 6.617 19 C -0.562 4.562 20 H 0.095 0.905 21 C 0.030 3.970 22 N -0.801 5.801 23 Si 1.010 2.990 24 H -0.243 1.243 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.064 4.064 28 C -0.208 4.208 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.142 0.858 43 H 0.384 0.616 44 H 0.281 0.719 45 H 0.109 0.891 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 9.147 -24.211 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.267 6.267 6 C 0.312 3.688 7 O -0.396 6.396 8 C -0.017 4.017 9 O -0.220 6.220 10 C 0.084 3.916 11 C -0.168 4.168 12 C -0.063 4.063 13 C -0.093 4.093 14 C -0.139 4.139 15 N -0.075 5.075 16 N -0.341 5.341 17 C 0.353 3.647 18 O -0.502 6.502 19 C -0.598 4.598 20 H 0.113 0.887 21 C -0.189 4.189 22 N -0.429 5.429 23 Si 0.828 3.172 24 H -0.166 1.166 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.085 4.085 28 C -0.226 4.226 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.186 0.814 42 H 0.159 0.841 43 H 0.222 0.778 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.953 10.632 -24.047 28.483 hybrid contribution -0.104 -1.250 0.549 1.369 sum -11.058 9.382 -23.498 27.612 Atomic orbital electron populations 1.22482 0.93778 1.03593 1.04070 1.22579 0.94779 0.93348 0.82030 1.21896 1.02545 0.90631 1.04378 1.22484 1.01987 1.01995 0.97456 1.86505 1.69801 1.23827 1.46531 1.23069 0.77493 0.81353 0.86870 1.90627 1.35225 1.70285 1.43498 1.22195 1.02198 0.81409 0.95937 1.85966 1.71021 1.21318 1.43739 1.19361 0.94830 0.90666 0.86694 1.20343 1.04420 0.90463 1.01533 1.21093 0.93975 1.00860 0.90326 1.18646 1.02312 0.93203 0.95108 1.24613 0.97345 0.99232 0.92724 1.74901 1.11545 1.23473 0.97578 1.47280 1.54159 1.11994 1.20659 1.17194 0.78040 0.88291 0.81152 1.90653 1.58334 1.21862 1.79364 1.20350 1.33622 0.99960 1.05874 0.88654 1.27152 0.92997 0.96986 1.01730 1.70189 1.24134 1.18033 1.30525 0.84801 0.78698 0.78325 0.75409 1.16553 1.19001 1.19012 1.21040 0.96819 0.93329 0.97301 1.21092 1.03861 1.02103 0.95591 0.91538 0.88948 0.92136 0.91091 0.88137 0.91089 0.92136 0.88948 0.91539 0.85410 0.85424 0.82740 0.81364 0.84079 0.77814 0.90841 0.87316 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.37 71.98 0.60 -1.83 16 2 C 0.11 1.45 1.13 -10.80 -0.01 1.44 16 3 C -0.14 -1.12 8.85 71.98 0.64 -0.48 16 4 C -0.18 -2.44 8.37 71.98 0.60 -1.83 16 5 O -0.35 -5.85 9.89 -51.38 -0.51 -6.35 16 6 C 0.47 9.01 7.34 71.23 0.52 9.53 16 7 O -0.51 -12.51 12.00 28.37 0.34 -12.17 16 8 C 0.06 0.93 5.32 71.23 0.38 1.31 16 9 O -0.31 -6.67 9.66 -70.99 -0.69 -7.36 16 10 C 0.13 2.92 6.71 22.73 0.15 3.07 16 11 C -0.15 -3.01 9.93 22.11 0.22 -2.79 16 12 C -0.04 -0.87 9.76 22.38 0.22 -0.65 16 13 C -0.09 -2.59 5.88 -20.07 -0.12 -2.70 16 14 C 0.07 2.34 10.75 87.09 0.94 3.27 16 15 N -0.27 -12.29 10.19 -52.26 -0.53 -12.83 16 16 N -0.60 -29.33 6.26 -180.51 -1.13 -30.46 16 17 C 0.54 33.04 7.65 84.84 0.65 33.69 16 18 O -0.62 -43.61 15.20 -5.25 -0.08 -43.69 16 19 C -0.56 -31.69 9.26 23.35 0.22 -31.47 16 20 H 0.10 4.69 7.85 -2.91 -0.02 4.67 16 21 C 0.03 1.64 5.50 85.35 0.47 2.10 16 22 N -0.80 -48.54 11.71 21.86 0.26 -48.29 16 23 Si 1.01 39.39 29.56 68.60 2.03 41.42 16 24 H -0.24 -8.64 7.11 99.48 0.71 -7.93 16 25 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 26 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 27 C -0.06 -1.97 9.54 22.38 0.21 -1.76 16 28 C -0.21 -4.96 8.97 22.12 0.20 -4.76 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.13 5.89 -2.39 -0.01 1.12 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.06 1.13 5.89 -2.39 -0.01 1.12 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.13 1.53 7.65 -2.39 -0.02 1.51 16 39 H 0.13 1.52 7.65 -2.38 -0.02 1.51 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.14 3.56 8.03 -2.91 -0.02 3.53 16 43 H 0.38 15.54 8.62 -213.32 -1.84 13.70 16 44 H 0.28 15.16 8.29 -92.71 -0.77 14.39 16 45 H 0.11 4.06 7.55 -2.91 -0.02 4.03 16 46 H 0.15 2.76 6.27 -2.91 -0.02 2.74 16 Total: -1.00 -87.00 395.90 4.76 -82.25 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.82 Total: 31.36 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.89 Total: 6.13 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -1.41 Total: -91.58 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -0.93 Total: -69.57 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -87.00 4.76 -82.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000440623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.308 kcal (2) G-P(sol) polarization free energy of solvation -87.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds