Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86805 * 120.00225 * 2 1 4 4 H 1.48493 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46752 * 299.99911 * 3 2 1 6 6 H 1.48494 * 109.46836 * 59.99728 * 3 2 1 7 7 C 1.39865 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00190 * 195.23299 * 7 2 1 9 9 C 1.41137 * 119.99809 * 15.22693 * 7 2 1 10 10 C 1.40890 * 120.15331 * 205.12247 * 9 7 2 11 11 C 1.36346 * 119.83488 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15952 * 359.97438 * 11 10 9 13 13 N 1.38857 * 119.84167 * 179.97438 * 12 11 10 14 14 S 1.65601 * 119.99776 * 74.07173 * 13 12 11 15 15 O 1.42100 * 106.40247 * 309.31947 * 14 13 12 16 16 O 1.42100 * 106.39838 * 176.40232 * 14 13 12 17 17 C 1.76195 * 107.21756 * 62.86103 * 14 13 12 18 18 C 1.38231 * 120.00091 * 84.47768 * 17 14 13 19 19 C 1.38235 * 120.00233 * 180.02562 * 18 17 14 20 20 C 1.38238 * 119.99982 * 359.97438 * 19 18 17 21 21 N 1.48020 * 120.00186 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99780 * 0.02562 * 21 20 19 23 23 O 1.21793 * 120.00144 * 179.72047 * 21 20 19 24 24 C 1.38236 * 119.99963 * 0.24932 * 20 19 18 25 25 C 1.38236 * 119.99834 * 264.49382 * 17 14 13 26 26 C 1.39566 * 120.31656 * 0.25956 * 12 11 10 27 27 C 1.36343 * 120.15846 * 359.48145 * 26 12 11 28 28 H 0.97006 * 120.00101 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.08188 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.92004 * 179.97438 * 11 10 9 31 31 H 0.96996 * 119.99786 * 254.07064 * 13 12 11 32 32 H 1.07997 * 120.00049 * 359.97438 * 18 17 14 33 33 H 1.08002 * 120.00506 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.00326 * 179.73010 * 24 20 19 35 35 H 1.07995 * 120.00667 * 0.02562 * 25 17 14 36 36 H 1.08002 * 119.92139 * 179.72219 * 26 12 11 37 37 H 1.08003 * 120.08095 * 180.23288 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8842 2.3964 1.2124 7 6 2.0083 -1.2112 -0.0005 8 1 3.0598 -1.2278 0.2452 9 6 1.3398 -2.4119 -0.3221 10 6 1.8253 -3.6434 0.1603 11 6 1.1747 -4.7994 -0.1548 12 6 0.0301 -4.7648 -0.9526 13 7 -0.6271 -5.9461 -1.2699 14 16 -1.5359 -6.7217 -0.1232 15 8 -0.7101 -6.8464 1.0265 16 8 -2.1372 -7.8336 -0.7724 17 6 -2.8497 -5.6359 0.3232 18 6 -4.0058 -5.6020 -0.4337 19 6 -5.0364 -4.7497 -0.0838 20 6 -4.9110 -3.9316 1.0234 21 7 -6.0142 -3.0185 1.3978 22 8 -7.0328 -2.9884 0.7305 23 8 -5.9057 -2.3013 2.3762 24 6 -3.7529 -3.9620 1.7777 25 6 -2.7240 -4.8175 1.4302 26 6 -0.4538 -3.5490 -1.4380 27 6 0.1836 -2.3846 -1.1266 28 1 -0.4850 0.8401 -0.0004 29 1 2.7107 -3.6716 0.7780 30 1 1.5460 -5.7442 0.2139 31 1 -0.5538 -6.3170 -2.1632 32 1 -4.1037 -6.2409 -1.2989 33 1 -5.9396 -4.7229 -0.6754 34 1 -3.6531 -3.3197 2.6401 35 1 -1.8205 -4.8434 2.0212 36 1 -1.3376 -3.5300 -2.0586 37 1 -0.1941 -1.4442 -1.4998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000528172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -27.174983 kcal Electronic energy + Delta-G solvation = -27715.261288 eV Core-core repulsion = 23552.771038 eV Total energy + Delta-G solvation = -4162.490250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30928 -39.48965 -38.20574 -37.07632 -36.69013 -35.75363 -35.00215 -33.03803 -32.40078 -31.64190 -29.79275 -28.94141 -26.93076 -24.96230 -23.45796 -22.87951 -21.35690 -21.00904 -19.55262 -19.52973 -18.79158 -18.01083 -17.66094 -17.58007 -17.41562 -16.67623 -15.82260 -15.49421 -15.22459 -14.71332 -14.23487 -14.11354 -13.99037 -13.78128 -13.53163 -13.00950 -12.60528 -12.31168 -12.03938 -11.95636 -11.85075 -11.78721 -11.67391 -11.53651 -11.44806 -11.34688 -11.24212 -11.11373 -11.03584 -10.88485 -10.21210 -10.08793 -9.97674 -9.59222 -9.45404 -9.16020 -7.85415 -7.56427 -7.06486 -4.65498 -0.55108 0.43921 0.74150 1.03474 1.22038 2.40798 2.82379 2.86209 2.92569 2.94858 2.97981 3.22236 3.71012 3.79309 4.04656 4.24884 4.29352 4.36872 4.73358 4.93104 5.00766 5.25486 5.35956 5.42645 5.45752 5.64360 5.99571 6.01930 6.07295 6.17171 6.28497 6.71476 6.77250 6.88107 7.03291 7.14788 7.32675 7.50677 7.73424 7.76523 7.82341 7.98329 8.32488 8.56921 8.66066 9.85006 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008648 B = 0.004498 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.856461 B = 6222.992021 C = 8794.669723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.440 4.440 8 H 0.084 0.916 9 C 0.119 3.881 10 C -0.223 4.223 11 C -0.060 4.060 12 C -0.048 4.048 13 N -1.021 6.021 14 S 2.669 3.331 15 O -0.944 6.944 16 O -0.971 6.971 17 C -0.622 4.622 18 C -0.022 4.022 19 C -0.082 4.082 20 C 0.002 3.998 21 N 0.024 4.976 22 O -0.157 6.157 23 O -0.149 6.149 24 C -0.070 4.070 25 C -0.003 4.003 26 C -0.084 4.084 27 C -0.165 4.165 28 H 0.285 0.715 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.410 0.590 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.090 0.910 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 -6.156 -1.196 8.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.116 3.884 10 C -0.244 4.244 11 C -0.081 4.081 12 C -0.144 4.144 13 N -0.776 5.776 14 S 2.759 3.241 15 O -0.934 6.934 16 O -0.961 6.961 17 C -0.705 4.705 18 C -0.042 4.042 19 C -0.102 4.102 20 C -0.081 4.081 21 N 0.545 4.455 22 O -0.373 6.373 23 O -0.367 6.367 24 C -0.090 4.090 25 C -0.023 4.023 26 C -0.106 4.106 27 C -0.186 4.186 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.248 0.752 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.184 0.816 36 H 0.108 0.892 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.348 -7.273 -0.845 9.067 hybrid contribution -0.512 1.668 -0.299 1.770 sum -5.860 -5.605 -1.145 8.190 Atomic orbital electron populations 1.69821 1.07715 1.29823 1.32989 1.26034 0.94867 1.01856 0.92018 0.86158 0.80968 0.80280 0.78879 1.18125 1.19485 1.19663 1.19786 0.97572 0.90914 1.38605 0.89745 1.17781 0.90921 0.92240 0.87501 1.20691 1.03753 0.92532 1.07397 1.20610 0.93233 0.97617 0.96625 1.16594 0.99754 0.83389 1.14710 1.52097 1.61649 1.37065 1.26835 1.03508 0.73198 0.73096 0.74293 1.93590 1.65030 1.84834 1.49970 1.93553 1.77988 1.49099 1.75501 1.31776 1.17142 1.17126 1.04419 1.20907 0.90216 0.95160 0.97883 1.21103 1.01008 0.93629 0.94412 1.21403 0.89426 0.96830 1.00422 1.43671 1.01756 1.00236 0.99853 1.94528 1.18313 1.72932 1.51537 1.94563 1.86916 1.38191 1.17038 1.21240 0.90312 0.97874 0.99587 1.21102 0.98188 0.89576 0.93408 1.20611 0.98368 0.92395 0.99200 1.21031 0.99146 0.96722 1.01690 0.90389 0.88208 0.88032 0.75200 0.82334 0.82333 0.82027 0.81573 0.89218 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.04 10.83 55.54 0.60 -17.44 16 2 C 0.07 1.62 5.19 -17.34 -0.09 1.53 16 3 Si 0.91 16.85 29.59 -169.99 -5.03 11.82 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.34 9.04 -37.87 -0.34 -10.68 16 8 H 0.08 1.90 7.89 -52.49 -0.41 1.49 16 9 C 0.12 2.79 5.58 -106.79 -0.60 2.20 16 10 C -0.22 -4.84 9.74 -39.26 -0.38 -5.22 16 11 C -0.06 -1.19 9.19 -39.77 -0.37 -1.56 16 12 C -0.05 -0.88 5.80 -83.69 -0.49 -1.37 16 13 N -1.02 -15.25 5.65 32.51 0.18 -15.07 16 14 S 2.67 39.67 5.70 -107.50 -0.61 39.05 16 15 O -0.94 -16.53 16.08 -57.17 -0.92 -17.45 16 16 O -0.97 -15.20 17.43 -57.17 -1.00 -16.20 16 17 C -0.62 -8.60 5.85 -39.58 -0.23 -8.83 16 18 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 19 C -0.08 -0.98 9.56 -39.58 -0.38 -1.36 16 20 C 0.00 0.02 6.85 -79.95 -0.55 -0.53 16 21 N 0.02 0.36 4.45 33.96 0.15 0.51 16 22 O -0.16 -2.36 18.45 -29.46 -0.54 -2.90 16 23 O -0.15 -2.36 18.45 -29.46 -0.54 -2.90 16 24 C -0.07 -0.96 9.56 -39.58 -0.38 -1.34 16 25 C 0.00 -0.04 9.53 -39.58 -0.38 -0.42 16 26 C -0.08 -1.67 9.90 -39.77 -0.39 -2.06 16 27 C -0.17 -3.74 8.63 -39.27 -0.34 -4.08 16 28 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 29 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.10 1.91 7.84 -52.49 -0.41 1.50 16 31 H 0.41 5.03 8.95 -34.47 -0.31 4.72 16 32 H 0.16 1.47 7.75 -52.49 -0.41 1.06 16 33 H 0.16 1.51 7.61 -52.49 -0.40 1.11 16 34 H 0.16 1.98 7.61 -52.49 -0.40 1.58 16 35 H 0.17 2.29 7.51 -52.49 -0.39 1.90 16 36 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.12 2.92 6.09 -52.48 -0.32 2.60 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -27.91 347.55 -10.79 -38.70 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.03 Total: 11.01 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -5.28 Total: -34.36 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.94 Total: -32.00 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -3.00 Total: -39.46 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 39.67 SS G_CDS: -0.61 Total: 39.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.91 -10.79 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000528172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.527 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds