Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00173 * 2 1 4 4 C 1.38727 * 120.05670 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94433 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05570 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94424 * 179.97438 * 6 5 4 8 8 S 1.81397 * 109.47464 * 90.00096 * 7 6 5 9 9 C 1.76196 * 103.00147 * 180.02562 * 8 7 6 10 10 N 1.30867 * 120.53873 * 359.97438 * 9 8 7 11 11 N 1.39984 * 119.80354 * 180.02562 * 10 9 8 12 12 C 1.46506 * 119.51454 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46703 * 269.99690 * 12 11 10 14 14 H 1.07999 * 120.00363 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00151 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99851 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47366 * 89.99711 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99434 * 17 15 13 20 20 H 1.48498 * 109.47090 * 329.99211 * 17 15 13 21 21 C 1.34454 * 120.97021 * 359.73937 * 11 10 9 22 22 O 1.21630 * 119.43018 * 180.28702 * 21 11 10 23 23 N 1.34598 * 121.14195 * 0.52755 * 21 11 10 24 24 H 0.97001 * 119.96455 * 179.76152 * 23 21 11 25 25 C 1.34923 * 120.07451 * 359.47785 * 23 21 11 26 26 O 1.21674 * 120.46037 * 180.23241 * 25 23 21 27 27 C 1.38263 * 120.11241 * 0.25410 * 6 5 4 28 28 C 1.38150 * 120.05216 * 359.45140 * 27 6 5 29 29 H 1.08999 * 109.47159 * 59.99680 * 1 2 3 30 30 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46969 * 299.99889 * 1 2 3 32 32 H 1.07998 * 120.02853 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97221 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.46882 * 330.00062 * 7 6 5 35 35 H 1.09002 * 109.47315 * 210.00592 * 7 6 5 36 36 H 1.09000 * 109.47279 * 29.99452 * 12 11 10 37 37 H 1.09002 * 109.47051 * 149.99624 * 12 11 10 38 38 H 0.97000 * 119.99848 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.97443 * 179.70271 * 27 6 5 40 40 H 1.08001 * 120.02547 * 180.25059 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 16 4.2613 5.5585 -1.7069 9 6 5.0567 7.1179 -1.5070 10 7 5.2985 7.5926 -0.3116 11 7 5.9309 8.8335 -0.1706 12 6 6.1990 9.3587 1.1706 13 6 5.0250 10.1839 1.6308 14 1 4.1653 10.3054 0.9884 15 6 5.0488 10.7846 2.8716 16 7 6.0958 10.6371 3.6537 17 14 3.5932 11.8069 3.4424 18 1 2.6265 10.9357 4.1577 19 1 4.0676 12.8757 4.3578 20 1 2.9285 12.4220 2.2656 21 6 6.3009 9.5479 -1.2479 22 8 6.8533 10.6204 -1.0928 23 7 6.0664 9.0989 -2.4949 24 1 6.3376 9.6300 -3.2600 25 6 5.4597 7.9084 -2.6820 26 8 5.2481 7.4939 -3.8062 27 6 1.9212 3.6048 0.0069 28 6 1.2916 2.3751 0.0002 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3799 0.0005 33 1 5.1346 2.5750 0.0011 34 1 4.9439 4.9378 0.5169 35 1 3.3580 5.7459 0.5170 36 1 6.3534 8.5297 1.8612 37 1 7.0932 9.9815 1.1448 38 1 6.1123 11.0594 4.5267 39 1 1.3343 4.5114 0.0122 40 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001584621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = -22.127408 kcal Electronic energy + Delta-G solvation = -26817.779080 eV Core-core repulsion = 22725.914893 eV Total energy + Delta-G solvation = -4091.864187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49161 -40.39095 -38.74603 -37.94163 -36.75333 -34.72824 -33.29859 -32.38485 -31.85889 -31.31393 -28.20041 -27.58613 -26.28347 -25.43303 -23.95539 -22.93566 -22.71994 -21.50672 -19.57722 -19.11911 -18.43589 -17.17582 -17.03639 -16.57451 -16.38356 -16.10608 -16.05435 -15.50064 -15.35695 -14.79477 -14.62275 -14.50256 -14.24918 -14.19035 -13.83269 -13.77491 -13.17463 -12.81269 -12.70427 -12.60431 -12.31428 -12.16208 -11.85205 -11.65750 -11.41943 -11.16730 -11.06252 -10.86855 -10.56580 -10.46706 -10.22940 -10.14615 -10.02461 -9.97612 -9.24631 -8.92016 -8.64622 -8.33465 -7.48718 -6.26916 -4.33366 0.71463 0.86114 1.11839 1.41128 2.02067 2.05787 2.66267 2.81835 2.95782 3.20250 3.26878 3.31344 3.50214 3.57975 4.22540 4.28996 4.48149 4.50672 4.61709 4.74802 4.80403 4.99357 5.08182 5.09834 5.13611 5.22967 5.29197 5.43434 5.63948 5.79212 5.99088 6.06178 6.08685 6.18349 6.35322 6.47472 6.58041 6.91996 7.07276 7.08383 7.36056 7.65979 7.85251 8.01398 8.24358 8.66983 9.31671 10.81466 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.002804 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.928156 B = 9984.917055 C =11931.076347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.111 4.111 7 C -0.073 4.073 8 S 0.026 5.974 9 C -0.009 4.009 10 N -0.159 5.159 11 N -0.403 5.403 12 C 0.267 3.733 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.905 3.095 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.668 3.332 22 O -0.524 6.524 23 N -0.655 5.655 24 H 0.430 0.570 25 C 0.551 3.449 26 O -0.492 6.492 27 C -0.057 4.057 28 C -0.208 4.208 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.268 0.732 39 H 0.131 0.869 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -19.252 -7.207 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.171 4.171 5 C -0.078 4.078 6 C -0.113 4.113 7 C -0.221 4.221 8 S 0.257 5.743 9 C -0.306 4.306 10 N 0.017 4.983 11 N -0.230 5.230 12 C 0.150 3.850 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.198 1.198 21 C 0.368 3.632 22 O -0.393 6.393 23 N -0.327 5.327 24 H 0.273 0.727 25 C 0.335 3.665 26 O -0.361 6.361 27 C -0.077 4.077 28 C -0.227 4.227 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.104 -19.591 -7.440 22.469 hybrid contribution -0.452 2.053 0.489 2.158 sum -8.556 -17.538 -6.951 20.715 Atomic orbital electron populations 1.23071 0.78301 1.03950 1.01531 1.86068 1.21481 1.27026 1.88599 1.19100 0.92450 0.84139 0.95862 1.20405 0.91319 0.98634 1.06715 1.20930 1.00245 0.90669 0.95985 1.19115 0.93529 0.93005 1.05637 1.22545 1.05526 0.97249 0.96780 1.85916 1.69908 1.08953 1.09543 1.27009 1.08676 1.03563 0.91357 1.75568 1.04548 0.98388 1.19824 1.49747 1.51638 1.12318 1.09264 1.19824 0.98731 0.95074 0.71354 1.21234 1.02432 1.31947 1.01899 0.92150 1.24875 0.96607 0.96079 0.96003 1.69908 1.28779 1.43820 1.10219 0.86375 0.81925 0.79796 0.78678 1.20314 1.20807 1.19784 1.16535 0.81216 0.85090 0.80381 1.91068 1.45029 1.19903 1.83269 1.44704 1.56626 1.21093 1.10267 0.72745 1.18610 0.77462 0.80799 0.89618 1.90887 1.52226 1.68941 1.24069 1.20919 0.93686 0.97526 0.95572 1.21217 1.00150 0.92135 1.09207 0.92507 0.88266 0.92531 0.84942 0.84680 0.87519 0.87372 0.92431 0.91558 0.92218 0.85079 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.92 10.50 -19.42 -0.20 -3.12 16 3 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 4 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 5 C -0.06 -0.56 9.69 -39.60 -0.38 -0.94 16 6 C -0.11 -1.14 5.14 -104.60 -0.54 -1.68 16 7 C -0.07 -0.84 5.38 36.01 0.19 -0.65 16 8 S 0.03 0.34 21.61 -107.50 -2.32 -1.98 16 9 C -0.01 -0.15 7.32 -14.30 -0.10 -0.26 16 10 N -0.16 -2.96 10.72 32.90 0.35 -2.61 16 11 N -0.40 -8.65 3.48 -66.54 -0.23 -8.88 16 12 C 0.27 6.58 5.41 -5.19 -0.03 6.55 16 13 C -0.54 -14.43 9.38 -34.44 -0.32 -14.75 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 17 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.67 13.78 8.42 -87.37 -0.74 13.05 16 22 O -0.52 -12.29 16.63 5.25 0.09 -12.20 16 23 N -0.65 -10.99 5.24 -16.86 -0.09 -11.08 16 24 H 0.43 6.00 8.89 -40.82 -0.36 5.63 16 25 C 0.55 9.31 7.93 -12.54 -0.10 9.21 16 26 O -0.49 -8.66 17.51 5.21 0.09 -8.57 16 27 C -0.06 -0.55 9.69 -39.60 -0.38 -0.94 16 28 C -0.21 -1.89 9.04 -39.43 -0.36 -2.24 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.11 1.20 8.08 -51.92 -0.42 0.78 16 35 H 0.11 1.30 8.08 -51.92 -0.42 0.88 16 36 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.76 7.35 -51.93 -0.38 1.38 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -31.70 369.80 -7.92 -39.62 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.37 Total: 2.03 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -2.52 Total: 9.40 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.77 Total: -46.62 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.03 Total: -23.90 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.32 Total: -1.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.70 -7.92 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001584621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.496 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds