Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00173 * 2 1 4 4 C 1.38727 * 120.05670 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94433 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05570 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94424 * 179.97438 * 6 5 4 8 8 S 1.81397 * 109.47464 * 90.00096 * 7 6 5 9 9 C 1.76196 * 103.00147 * 180.02562 * 8 7 6 10 10 N 1.30867 * 120.53873 * 359.97438 * 9 8 7 11 11 N 1.39984 * 119.80354 * 180.02562 * 10 9 8 12 12 C 1.46506 * 119.51454 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46703 * 269.99690 * 12 11 10 14 14 H 1.07999 * 120.00363 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99720 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00151 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99851 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47366 * 89.99711 * 17 15 13 19 19 H 1.48505 * 109.46937 * 209.99434 * 17 15 13 20 20 H 1.48498 * 109.47090 * 329.99211 * 17 15 13 21 21 C 1.34454 * 120.97021 * 359.73937 * 11 10 9 22 22 O 1.21630 * 119.43018 * 180.28702 * 21 11 10 23 23 N 1.34598 * 121.14195 * 0.52755 * 21 11 10 24 24 H 0.97001 * 119.96455 * 179.76152 * 23 21 11 25 25 C 1.34923 * 120.07451 * 359.47785 * 23 21 11 26 26 O 1.21674 * 120.46037 * 180.23241 * 25 23 21 27 27 C 1.38263 * 120.11241 * 0.25410 * 6 5 4 28 28 C 1.38150 * 120.05216 * 359.45140 * 27 6 5 29 29 H 1.08999 * 109.47159 * 59.99680 * 1 2 3 30 30 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46969 * 299.99889 * 1 2 3 32 32 H 1.07998 * 120.02853 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97221 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.46882 * 330.00062 * 7 6 5 35 35 H 1.09002 * 109.47315 * 210.00592 * 7 6 5 36 36 H 1.09000 * 109.47279 * 29.99452 * 12 11 10 37 37 H 1.09002 * 109.47051 * 149.99624 * 12 11 10 38 38 H 0.97000 * 119.99848 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.97443 * 179.70271 * 27 6 5 40 40 H 1.08001 * 120.02547 * 180.25059 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 16 4.2613 5.5585 -1.7069 9 6 5.0567 7.1179 -1.5070 10 7 5.2985 7.5926 -0.3116 11 7 5.9309 8.8335 -0.1706 12 6 6.1990 9.3587 1.1706 13 6 5.0250 10.1839 1.6308 14 1 4.1653 10.3054 0.9884 15 6 5.0488 10.7846 2.8716 16 7 6.0958 10.6371 3.6537 17 14 3.5932 11.8069 3.4424 18 1 2.6265 10.9357 4.1577 19 1 4.0676 12.8757 4.3578 20 1 2.9285 12.4220 2.2656 21 6 6.3009 9.5479 -1.2479 22 8 6.8533 10.6204 -1.0928 23 7 6.0664 9.0989 -2.4949 24 1 6.3376 9.6300 -3.2600 25 6 5.4597 7.9084 -2.6820 26 8 5.2481 7.4939 -3.8062 27 6 1.9212 3.6048 0.0069 28 6 1.2916 2.3751 0.0002 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3799 0.0005 33 1 5.1346 2.5750 0.0011 34 1 4.9439 4.9378 0.5169 35 1 3.3580 5.7459 0.5170 36 1 6.3534 8.5297 1.8612 37 1 7.0932 9.9815 1.1448 38 1 6.1123 11.0594 4.5267 39 1 1.3343 4.5114 0.0122 40 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001584621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -42.725122 kcal Electronic energy + Delta-G solvation = -26818.672264 eV Core-core repulsion = 22725.914893 eV Total energy + Delta-G solvation = -4092.757371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.01205 -41.06190 -40.28585 -38.62580 -38.31503 -36.33124 -35.11417 -33.66802 -33.09783 -32.01422 -29.49203 -28.75615 -27.04540 -26.87763 -25.72453 -24.37895 -23.61100 -22.29981 -21.05336 -20.59780 -19.08578 -18.93990 -18.62986 -17.77894 -17.66460 -17.21864 -17.11846 -16.63441 -16.39421 -16.28370 -15.94596 -15.74236 -15.40196 -15.26394 -14.96405 -14.67622 -14.45382 -14.18561 -14.06644 -13.59240 -13.53282 -13.42786 -13.03753 -12.83754 -12.67670 -12.59798 -12.36037 -12.17080 -11.91204 -11.82800 -11.72963 -11.70938 -11.51303 -11.46222 -10.69319 -10.55834 -9.95119 -9.07280 -8.77146 -8.29946 -6.45226 -0.55227 -0.32754 0.32841 0.41227 0.54095 0.88437 1.19588 1.38902 1.40605 1.49038 1.52338 1.96824 2.35874 2.39660 2.80538 2.84043 3.02459 3.63172 3.76387 3.79308 3.96619 4.12913 4.36535 4.43451 4.43892 4.59635 4.62523 4.69296 4.74146 4.77215 4.79752 4.86437 4.99591 5.10439 5.11662 5.26997 5.37944 5.59011 5.60486 5.78297 5.83550 5.89962 6.44958 6.47581 6.54643 6.71365 7.23730 8.77366 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.002804 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.928156 B = 9984.917055 C =11931.076347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.124 3.876 4 C -0.163 4.163 5 C -0.060 4.060 6 C -0.124 4.124 7 C -0.069 4.069 8 S 0.060 5.940 9 C 0.004 3.996 10 N -0.180 5.180 11 N -0.420 5.420 12 C 0.285 3.715 13 C -0.551 4.551 14 H 0.051 0.949 15 C 0.022 3.978 16 N -0.918 5.918 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.275 1.275 21 C 0.671 3.329 22 O -0.561 6.561 23 N -0.640 5.640 24 H 0.443 0.557 25 C 0.554 3.446 26 O -0.491 6.491 27 C -0.064 4.064 28 C -0.211 4.211 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.272 0.728 39 H 0.141 0.859 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 -20.786 -7.729 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.077 3.923 4 C -0.181 4.181 5 C -0.080 4.080 6 C -0.127 4.127 7 C -0.216 4.216 8 S 0.291 5.709 9 C -0.293 4.293 10 N -0.004 5.004 11 N -0.244 5.244 12 C 0.167 3.833 13 C -0.590 4.590 14 H 0.069 0.931 15 C -0.179 4.179 16 N -0.557 5.557 17 Si 0.792 3.208 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.200 1.200 21 C 0.371 3.629 22 O -0.433 6.433 23 N -0.313 5.313 24 H 0.288 0.712 25 C 0.338 3.662 26 O -0.360 6.360 27 C -0.084 4.084 28 C -0.229 4.229 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.158 0.842 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.040 -21.158 -8.007 24.750 hybrid contribution 0.033 2.243 0.523 2.303 sum -10.006 -18.915 -7.484 22.669 Atomic orbital electron populations 1.23350 0.76478 1.05568 1.02314 1.86054 1.23448 1.26834 1.88413 1.19321 0.92810 0.84678 0.95443 1.20627 0.91688 0.99080 1.06720 1.21111 1.01010 0.90453 0.95433 1.19087 0.93935 0.92433 1.07238 1.22599 1.05799 0.97857 0.95384 1.85938 1.67805 1.05958 1.11187 1.27679 1.06485 1.04454 0.90688 1.75654 1.06783 0.97380 1.20560 1.49350 1.52906 1.13762 1.08415 1.19254 0.97004 0.94170 0.72897 1.21437 1.02742 1.32601 1.02170 0.93074 1.25695 0.99181 0.97013 0.96041 1.70000 1.30415 1.44622 1.10633 0.85408 0.78868 0.78412 0.78114 1.18905 1.20180 1.19959 1.16545 0.80724 0.84538 0.81092 1.91034 1.46808 1.21515 1.83955 1.44452 1.56181 1.21249 1.09394 0.71177 1.18668 0.77212 0.80652 0.89699 1.90899 1.52114 1.68822 1.24131 1.21114 0.93613 0.98302 0.95336 1.21437 1.01267 0.91599 1.08628 0.91656 0.86396 0.91744 0.83840 0.83373 0.87262 0.87804 0.93166 0.94369 0.91859 0.84168 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.52 10.50 -92.41 -0.97 -6.49 16 3 C 0.12 2.20 6.69 22.51 0.15 2.35 16 4 C -0.16 -2.82 9.99 22.36 0.22 -2.60 16 5 C -0.06 -1.05 9.69 22.25 0.22 -0.83 16 6 C -0.12 -2.37 5.14 -19.85 -0.10 -2.47 16 7 C -0.07 -1.49 5.38 71.24 0.38 -1.10 16 8 S 0.06 1.47 21.61 -56.49 -1.22 0.25 16 9 C 0.00 0.11 7.32 87.21 0.64 0.75 16 10 N -0.18 -6.68 10.72 -49.82 -0.53 -7.21 16 11 N -0.42 -18.39 3.48 -482.85 -1.68 -20.07 16 12 C 0.29 14.58 5.41 85.63 0.46 15.05 16 13 C -0.55 -30.25 9.38 25.60 0.24 -30.01 16 14 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 15 C 0.02 1.17 5.46 84.65 0.46 1.64 16 16 N -0.92 -51.89 13.29 21.45 0.28 -51.61 16 17 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C 0.67 28.16 8.42 179.21 1.51 29.67 16 22 O -0.56 -27.15 16.63 -4.13 -0.07 -27.22 16 23 N -0.64 -21.17 5.24 -443.76 -2.33 -23.50 16 24 H 0.44 12.05 8.89 -92.71 -0.82 11.22 16 25 C 0.55 17.98 7.93 86.59 0.69 18.67 16 26 O -0.49 -16.27 17.51 -4.27 -0.07 -16.35 16 27 C -0.06 -1.12 9.69 22.25 0.22 -0.91 16 28 C -0.21 -3.38 9.04 22.37 0.20 -3.18 16 29 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 32 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.11 2.34 8.08 -2.39 -0.02 2.32 16 35 H 0.10 2.38 8.08 -2.39 -0.02 2.37 16 36 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.04 2.15 7.35 -2.39 -0.02 2.13 16 38 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.15 1.68 6.30 -2.91 -0.02 1.66 16 Total: -1.00 -67.82 369.80 2.12 -65.70 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.28 Total: 13.44 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 6.40 Total: 28.29 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -4.26 Total: -102.39 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.11 Total: -50.06 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.22 Total: 0.25 kcal Total: -67.82 2.12 -65.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001584621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.974 kcal (2) G-P(sol) polarization free energy of solvation -67.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds