Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35891 * 117.00303 * 2 1 4 4 C 1.38846 * 119.92293 * 180.02562 * 3 2 1 5 5 C 1.37870 * 120.08018 * 180.02562 * 4 3 2 6 6 C 1.39526 * 119.92312 * 359.97438 * 5 4 3 7 7 C 1.48094 * 120.08004 * 179.97438 * 6 5 4 8 8 C 1.43193 * 120.00236 * 295.00202 * 7 6 5 9 9 N 7.24402 * 123.20473 * 19.44010 * 2 1 3 10 10 C 1.36170 * 119.99411 * 115.00619 * 7 6 5 11 11 C 1.46710 * 119.99955 * 172.49638 * 10 7 6 12 12 C 1.40113 * 120.10564 * 324.06460 * 11 10 7 13 13 C 1.37107 * 119.89187 * 179.71571 * 12 11 10 14 14 C 1.39221 * 120.10658 * 0.57820 * 13 12 11 15 15 N 1.39242 * 119.89688 * 179.69841 * 14 13 12 16 16 C 1.46500 * 120.00323 * 179.97438 * 15 14 13 17 17 C 1.46498 * 119.99525 * 359.97381 * 15 14 13 18 18 C 1.50695 * 109.47186 * 90.00359 * 17 15 14 19 19 H 1.08001 * 120.00282 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00216 * 179.97438 * 18 17 15 21 21 N 1.31513 * 120.00135 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47047 * 120.00169 * 22 20 18 25 25 H 1.48502 * 109.47308 * 240.00155 * 22 20 18 26 26 C 1.39221 * 120.21305 * 359.67240 * 14 13 12 27 27 C 1.37113 * 120.10926 * 0.04417 * 26 14 13 28 28 C 1.39527 * 119.83496 * 0.27788 * 6 5 4 29 29 C 1.37874 * 119.91934 * 359.48721 * 28 6 5 30 30 H 1.09005 * 109.46923 * 299.99204 * 1 2 3 31 31 H 1.08998 * 109.47357 * 59.99431 * 1 2 3 32 32 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.96028 * 0.02562 * 4 3 2 34 34 H 1.08007 * 120.04079 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.00449 * 352.76939 * 10 7 6 36 36 H 1.08001 * 120.05338 * 359.97073 * 12 11 10 37 37 H 1.08003 * 119.95063 * 180.29639 * 13 12 11 38 38 H 1.08993 * 109.47562 * 89.99470 * 16 15 14 39 39 H 1.09004 * 109.46777 * 209.99954 * 16 15 14 40 40 H 1.09000 * 109.46540 * 329.99209 * 16 15 14 41 41 H 1.09006 * 109.47131 * 210.00388 * 17 15 14 42 42 H 1.09003 * 109.47271 * 330.00156 * 17 15 14 43 43 H 0.96999 * 120.00590 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.94534 * 180.02562 * 26 14 13 45 45 H 1.07997 * 120.05716 * 179.97438 * 27 26 14 46 46 H 1.07997 * 120.03965 * 179.72188 * 28 6 5 47 47 H 1.08004 * 119.96214 * 180.23324 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4326 1.2815 -0.0005 5 6 4.0619 2.5082 0.0000 6 6 3.3037 3.6794 0.0005 7 6 3.9761 4.9989 0.0017 8 6 4.7678 5.3981 1.1261 9 7 5.3960 5.7157 2.0173 10 6 3.8414 5.8325 -1.0666 11 6 4.3672 7.2006 -1.0004 12 6 4.3106 7.9178 0.2019 13 6 4.8085 9.1939 0.2604 14 6 5.3588 9.7816 -0.8755 15 7 5.8575 11.0801 -0.8128 16 6 6.4375 11.7005 -2.0065 17 6 5.8021 11.8259 0.4470 18 6 7.0611 11.5736 1.2358 19 1 7.8259 10.9226 0.8387 20 6 7.2368 12.1740 2.4645 21 7 6.3054 12.9665 2.9484 22 14 8.7971 11.8608 3.4426 23 1 9.6801 10.9387 2.6841 24 1 9.5044 13.1463 3.6714 25 1 8.4475 11.2487 4.7497 26 6 5.4125 9.0749 -2.0738 27 6 4.9224 7.7961 -2.1407 28 6 1.9105 3.6044 0.0064 29 6 1.2880 2.3742 0.0010 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 4.0189 0.3745 -0.0014 34 1 5.1406 2.5624 0.0000 35 1 3.3437 5.4881 -1.9610 36 1 3.8792 7.4647 1.0823 37 1 4.7698 9.7459 1.1879 38 1 5.6571 12.2218 -2.5607 39 1 7.2081 12.4115 -1.7084 40 1 6.8790 10.9298 -2.6383 41 1 5.7136 12.8914 0.2348 42 1 4.9388 11.4977 1.0259 43 1 6.4288 13.3886 3.8129 44 1 5.8406 9.5348 -2.9522 45 1 4.9641 7.2488 -3.0708 46 1 1.3204 4.5089 0.0114 47 1 0.2096 2.3154 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001735963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = 68.810217 kcal Electronic energy + Delta-G solvation = -28103.615685 eV Core-core repulsion = 24217.342998 eV Total energy + Delta-G solvation = -3886.272687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.158 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.38599 -39.29869 -38.12426 -36.72006 -35.64166 -33.64515 -32.69959 -31.35475 -30.74088 -30.44813 -28.41623 -27.90762 -27.19821 -25.35620 -23.76054 -22.81463 -22.31357 -22.01215 -21.23060 -19.89615 -18.50012 -17.64644 -16.65482 -16.47482 -16.32046 -16.05853 -15.69268 -15.13853 -14.73734 -14.56430 -14.25793 -14.09119 -13.89592 -13.87365 -13.75063 -13.30364 -13.24656 -13.03418 -12.88548 -12.66822 -12.34754 -12.23153 -12.15355 -12.07005 -11.92816 -11.51198 -11.37254 -11.32647 -11.13571 -11.03959 -10.92471 -10.76170 -10.40455 -10.05094 -9.98097 -9.49929 -9.26278 -8.73770 -8.56805 -8.51806 -8.21155 -6.54269 -6.09241 -4.23544 0.75847 1.12522 1.25709 1.99099 2.33532 2.94650 3.07154 3.24172 3.32888 3.37628 3.45215 3.69312 3.97545 4.25199 4.35306 4.39553 4.52885 4.62342 4.69793 4.78022 4.78893 5.07400 5.12181 5.16556 5.21619 5.22981 5.29308 5.33635 5.42843 5.64402 5.74732 5.78597 5.86866 5.93156 5.99311 6.06203 6.11762 6.19908 6.24900 6.31849 6.42194 6.44564 6.47499 6.80020 6.86716 6.99335 7.08047 7.09317 7.23728 7.38261 7.74520 7.87877 8.03977 8.10136 8.28446 8.84476 9.43968 10.90031 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002082 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.100194 B =13444.402298 C =14462.818219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.151 4.151 5 C -0.062 4.062 6 C -0.067 4.067 7 C -0.072 4.072 8 C 0.255 3.745 9 N -0.425 5.425 10 C 0.029 3.971 11 C -0.193 4.193 12 C -0.041 4.041 13 C -0.191 4.191 14 C 0.261 3.739 15 N -0.602 5.602 16 C 0.093 3.907 17 C 0.244 3.756 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.281 1.281 26 C -0.228 4.228 27 C -0.036 4.036 28 C -0.060 4.060 29 C -0.208 4.208 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.264 0.736 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 -20.484 -12.103 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.170 4.170 5 C -0.080 4.080 6 C -0.068 4.068 7 C -0.075 4.075 8 C -0.058 4.058 9 N -0.101 5.101 10 C 0.006 3.994 11 C -0.196 4.196 12 C -0.060 4.060 13 C -0.213 4.213 14 C 0.150 3.850 15 N -0.304 5.304 16 C -0.051 4.051 17 C 0.125 3.875 18 C -0.573 4.573 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.207 1.207 26 C -0.251 4.251 27 C -0.055 4.055 28 C -0.078 4.078 29 C -0.227 4.227 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.149 0.851 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.940 -19.795 -10.528 24.946 hybrid contribution 0.404 0.002 0.373 0.550 sum -10.535 -19.793 -10.154 24.614 Atomic orbital electron populations 1.23063 0.78357 1.03921 1.01491 1.86064 1.21433 1.27116 1.88653 1.19145 0.92370 0.84117 0.96231 1.20349 0.91281 0.98611 1.06739 1.21147 1.00102 0.90616 0.96154 1.18339 0.92549 0.91035 1.04896 1.16503 1.04148 0.95136 0.91752 1.25641 0.93778 0.93283 0.93143 1.81286 1.10016 1.07956 1.10817 1.22432 0.90820 0.90803 0.95320 1.18490 1.11646 0.94406 0.95012 1.20977 0.95827 0.93737 0.95496 1.20711 1.05317 0.96467 0.98816 1.18189 0.88728 0.84866 0.93185 1.47222 1.59711 1.11504 1.11979 1.21578 0.97833 0.97954 0.87741 1.19406 0.97731 0.91272 0.79115 1.21554 1.03767 1.28881 1.03079 0.92136 1.24953 0.96915 0.94771 0.97321 1.69927 1.33488 1.30565 1.19199 0.86455 0.83038 0.78019 0.80096 1.19677 1.20873 1.20703 1.20425 1.11060 0.96391 0.97270 1.20708 0.94817 0.93635 0.96386 1.21115 0.93275 0.97328 0.96064 1.21163 1.00057 0.92121 1.09339 0.92557 0.92526 0.88310 0.85072 0.85017 0.84461 0.86966 0.84688 0.94064 0.91073 0.92335 0.94824 0.94381 0.92593 0.86280 0.86437 0.85051 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.82 10.49 -19.40 -0.20 -3.02 16 3 C 0.13 1.19 6.69 -39.13 -0.26 0.92 16 4 C -0.15 -1.42 9.97 -39.49 -0.39 -1.82 16 5 C -0.06 -0.61 9.74 -39.24 -0.38 -0.99 16 6 C -0.07 -0.69 5.31 -104.89 -0.56 -1.25 16 7 C -0.07 -0.86 5.23 -104.67 -0.55 -1.40 16 8 C 0.26 4.02 11.75 -22.49 -0.26 3.75 16 9 N -0.42 -7.99 18.28 41.82 0.76 -7.22 16 10 C 0.03 0.32 9.49 -36.91 -0.35 -0.03 16 11 C -0.19 -2.80 5.46 -105.07 -0.57 -3.37 16 12 C -0.04 -0.71 8.24 -39.29 -0.32 -1.04 16 13 C -0.19 -3.86 9.16 -39.63 -0.36 -4.22 16 14 C 0.26 5.08 6.56 -83.76 -0.55 4.53 16 15 N -0.60 -12.42 2.98 -180.94 -0.54 -12.96 16 16 C 0.09 1.53 10.18 59.85 0.61 2.14 16 17 C 0.24 6.02 4.90 -5.20 -0.03 5.99 16 18 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 19 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 22 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.23 -3.66 9.16 -39.62 -0.36 -4.02 16 27 C -0.04 -0.51 9.77 -39.29 -0.38 -0.89 16 28 C -0.06 -0.54 9.72 -39.23 -0.38 -0.92 16 29 C -0.21 -1.74 9.02 -39.49 -0.36 -2.10 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.11 1.94 6.17 -52.49 -0.32 1.62 16 37 H 0.14 3.08 6.11 -52.48 -0.32 2.76 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 41 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.04 1.00 6.17 -51.93 -0.32 0.67 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.12 1.66 6.11 -52.49 -0.32 1.34 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.13 0.79 6.28 -52.48 -0.33 0.46 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -32.04 402.05 -9.17 -41.22 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.07 Total: 0.91 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.90 Total: -16.84 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.96 Total: -45.11 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.20 Total: -3.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.04 -9.17 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001735963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.027 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds