Wall clock time and date at job start Tue Mar 31 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35887 * 116.99976 * 2 1 4 4 C 1.38847 * 119.92006 * 179.97438 * 3 2 1 5 5 C 1.37882 * 120.08063 * 180.02562 * 4 3 2 6 6 C 1.39525 * 119.91737 * 359.97438 * 5 4 3 7 7 C 1.48093 * 120.07899 * 180.02562 * 6 5 4 8 8 C 1.43199 * 120.00091 * 292.11050 * 7 6 5 9 9 N 7.24426 * 122.34532 * 19.68674 * 2 1 3 10 10 C 1.36169 * 120.00315 * 112.10820 * 7 6 5 11 11 C 1.46712 * 119.99932 * 352.78247 * 10 7 6 12 12 C 1.40115 * 120.10815 * 323.35539 * 11 10 7 13 13 C 1.37110 * 119.89482 * 179.97438 * 12 11 10 14 14 C 1.39224 * 120.10243 * 359.97438 * 13 12 11 15 15 N 1.39240 * 119.89010 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.46494 * 120.00051 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.47269 * 90.00054 * 17 15 14 19 19 H 1.08009 * 119.99858 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00146 * 180.02562 * 18 17 15 21 21 N 1.31507 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47403 * 59.99943 * 22 20 18 24 24 H 1.48497 * 109.47396 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47425 * 299.99866 * 22 20 18 26 26 C 1.39218 * 120.21553 * 0.02562 * 14 13 12 27 27 C 1.37107 * 120.10715 * 0.02562 * 26 14 13 28 28 C 1.39520 * 119.84001 * 0.27161 * 6 5 4 29 29 C 1.37878 * 119.91795 * 359.45301 * 28 6 5 30 30 H 1.09010 * 109.47038 * 300.00241 * 1 2 3 31 31 H 1.08994 * 109.46967 * 60.00202 * 1 2 3 32 32 H 1.09004 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.96177 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.03737 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.00093 * 172.78655 * 10 7 6 36 36 H 1.08001 * 120.05114 * 0.26982 * 12 11 10 37 37 H 1.07998 * 119.94885 * 180.02562 * 13 12 11 38 38 H 1.09004 * 109.46873 * 90.00313 * 16 15 14 39 39 H 1.09005 * 109.46803 * 209.99760 * 16 15 14 40 40 H 1.08996 * 109.47710 * 329.99887 * 16 15 14 41 41 H 1.09000 * 109.47467 * 209.99931 * 17 15 14 42 42 H 1.09007 * 109.47222 * 330.00142 * 17 15 14 43 43 H 0.97000 * 120.00466 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.94469 * 179.97438 * 26 14 13 45 45 H 1.08004 * 120.05435 * 179.97438 * 27 26 14 46 46 H 1.07997 * 120.04245 * 179.70086 * 28 6 5 47 47 H 1.08003 * 119.95584 * 180.24608 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4326 1.2815 0.0005 5 6 4.0620 2.5083 0.0011 6 6 3.3037 3.6795 0.0005 7 6 3.9760 4.9990 0.0005 8 6 4.7165 5.4253 1.1497 9 7 5.3049 5.7625 2.0618 10 6 3.8901 5.8070 -1.0922 11 6 3.2689 5.3100 -2.3249 12 6 3.4480 3.9759 -2.7138 13 6 2.8651 3.5159 -3.8664 14 6 2.0958 4.3721 -4.6497 15 7 1.5062 3.9005 -5.8196 16 6 1.6964 2.5055 -6.2249 17 6 0.6958 4.7991 -6.6453 18 6 1.5768 5.4784 -7.6619 19 1 2.6347 5.2626 -7.6899 20 6 1.0325 6.3761 -8.5557 21 7 -0.2555 6.6393 -8.5213 22 14 2.1244 7.2175 -9.8163 23 1 2.7627 6.1928 -10.6810 24 1 1.3030 8.1286 -10.6532 25 1 3.1755 7.9998 -9.1174 26 6 1.9149 5.6985 -4.2674 27 6 2.4947 6.1680 -3.1171 28 6 1.9105 3.6045 0.0052 29 6 1.2880 2.3742 -0.0011 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0189 0.3746 0.0014 34 1 5.1406 2.5625 0.0019 35 1 4.2793 6.8136 -1.0514 36 1 4.0403 3.3096 -2.1041 37 1 3.0022 2.4876 -4.1668 38 1 0.9053 1.8912 -5.7948 39 1 1.6609 2.4350 -7.3120 40 1 2.6645 2.1526 -5.8694 41 1 -0.0751 4.2246 -7.1587 42 1 0.2266 5.5512 -6.0109 43 1 -0.6386 7.2707 -9.1503 44 1 1.3177 6.3590 -4.8785 45 1 2.3542 7.1972 -2.8216 46 1 1.3204 4.5089 0.0097 47 1 0.2096 2.3154 -0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001735964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:22 Heat of formation + Delta-G solvation = 70.343740 kcal Electronic energy + Delta-G solvation = -29294.538584 eV Core-core repulsion = 25408.332395 eV Total energy + Delta-G solvation = -3886.206189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.158 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.35743 -39.25519 -38.05839 -36.52540 -35.95994 -33.69032 -32.72725 -31.20916 -30.73858 -30.01442 -28.57628 -27.93955 -27.24125 -25.40145 -23.83631 -22.68596 -22.25209 -21.81309 -21.22886 -19.69825 -18.36176 -17.58591 -16.85481 -16.58627 -16.21432 -15.88418 -15.56539 -15.11307 -14.77711 -14.52345 -14.25731 -13.97742 -13.86785 -13.82165 -13.62902 -13.35912 -13.25955 -13.14376 -12.88039 -12.79383 -12.57308 -12.24292 -12.15831 -12.09702 -11.55809 -11.54424 -11.41462 -11.22534 -11.06849 -11.00813 -10.95958 -10.74937 -10.43976 -10.08941 -10.00526 -9.55591 -9.06376 -8.72698 -8.60056 -8.50634 -8.02750 -6.55055 -6.12424 -4.28160 0.78287 1.26978 1.32771 2.03707 2.31984 2.72663 3.12563 3.22042 3.27149 3.29932 3.39935 3.63536 3.96704 4.09382 4.31885 4.41849 4.70340 4.71519 4.79737 4.94291 4.98217 5.12149 5.18991 5.22019 5.28029 5.34912 5.37547 5.42597 5.55724 5.64844 5.81950 5.85979 5.91696 5.93596 5.98752 6.11543 6.20972 6.25908 6.33630 6.34831 6.47073 6.50423 6.62096 6.80288 6.89726 7.01502 7.07608 7.20688 7.25093 7.39444 7.56839 7.70119 8.01441 8.07774 8.28106 8.79772 9.39276 10.85763 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.002924 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.722741 B = 9573.486152 C =11295.096575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.151 4.151 5 C -0.074 4.074 6 C -0.058 4.058 7 C -0.082 4.082 8 C 0.266 3.734 9 N -0.445 5.445 10 C 0.039 3.961 11 C -0.185 4.185 12 C -0.030 4.030 13 C -0.229 4.229 14 C 0.263 3.737 15 N -0.603 5.603 16 C 0.093 3.907 17 C 0.246 3.754 18 C -0.536 4.536 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.197 4.197 27 C -0.038 4.038 28 C -0.048 4.048 29 C -0.202 4.202 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.039 0.961 43 H 0.266 0.734 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.128 0.872 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -9.700 14.748 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.083 3.917 4 C -0.169 4.169 5 C -0.092 4.092 6 C -0.059 4.059 7 C -0.086 4.086 8 C -0.047 4.047 9 N -0.121 5.121 10 C 0.016 3.984 11 C -0.188 4.188 12 C -0.049 4.049 13 C -0.251 4.251 14 C 0.152 3.848 15 N -0.305 5.305 16 C -0.051 4.051 17 C 0.126 3.874 18 C -0.575 4.575 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.219 4.219 27 C -0.058 4.058 28 C -0.066 4.066 29 C -0.221 4.221 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.153 0.847 45 H 0.135 0.865 46 H 0.146 0.854 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.676 -9.382 15.815 18.583 hybrid contribution 0.004 0.518 -1.311 1.410 sum 2.680 -8.864 14.504 17.208 Atomic orbital electron populations 1.23060 0.78372 1.03834 1.01558 1.86049 1.21414 1.27138 1.88671 1.19097 0.92315 0.84084 0.96221 1.20274 0.91285 0.98419 1.06969 1.21062 0.99766 0.90790 0.97601 1.18167 0.92657 0.90698 1.04383 1.16442 1.05748 0.96704 0.89728 1.25878 0.92865 0.93107 0.92865 1.81236 1.11297 1.08811 1.10772 1.22423 0.89227 0.96897 0.89869 1.18291 1.08443 0.94835 0.97262 1.21046 0.95745 0.93587 0.94530 1.20402 1.06374 0.99853 0.98520 1.18201 0.88696 0.92460 0.85419 1.47210 1.51430 1.10439 1.21390 1.21570 0.99968 0.82659 1.00907 1.19375 0.90038 0.88604 0.89366 1.21496 0.95219 1.24732 1.16008 0.92199 1.24947 0.95072 0.96411 0.97467 1.69907 1.10977 1.34940 1.37396 0.86567 0.80412 0.79433 0.81132 1.20196 1.21146 1.20003 1.20706 1.07002 0.95053 0.99185 1.20843 0.94179 0.98084 0.92651 1.20974 0.93191 0.97206 0.95258 1.21140 1.00049 0.92134 1.08756 0.92714 0.92336 0.88388 0.85248 0.85288 0.85480 0.86098 0.86610 0.94193 0.91135 0.92310 0.94980 0.94361 0.92462 0.84667 0.86464 0.85406 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.40 10.49 -19.39 -0.20 -3.60 16 3 C 0.13 1.42 6.69 -39.13 -0.26 1.15 16 4 C -0.15 -1.59 9.97 -39.49 -0.39 -1.98 16 5 C -0.07 -0.77 8.01 -39.23 -0.31 -1.08 16 6 C -0.06 -0.64 2.92 -104.90 -0.31 -0.94 16 7 C -0.08 -0.91 5.19 -104.67 -0.54 -1.45 16 8 C 0.27 3.33 15.34 -22.45 -0.34 2.99 16 9 N -0.44 -6.47 18.54 41.86 0.78 -5.70 16 10 C 0.04 0.42 9.49 -36.91 -0.35 0.07 16 11 C -0.19 -2.44 5.14 -105.07 -0.54 -2.98 16 12 C -0.03 -0.41 7.95 -39.29 -0.31 -0.73 16 13 C -0.23 -3.53 9.16 -39.62 -0.36 -3.90 16 14 C 0.26 4.73 6.56 -83.76 -0.55 4.18 16 15 N -0.60 -11.73 2.98 -180.94 -0.54 -12.27 16 16 C 0.09 1.48 10.17 59.85 0.61 2.09 16 17 C 0.25 5.71 4.90 -5.20 -0.03 5.69 16 18 C -0.54 -13.79 9.39 -34.44 -0.32 -14.11 16 19 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 22 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.20 -3.50 9.16 -39.63 -0.36 -3.87 16 27 C -0.04 -0.55 9.77 -39.29 -0.38 -0.94 16 28 C -0.05 -0.53 8.91 -39.24 -0.35 -0.88 16 29 C -0.20 -2.14 9.02 -39.49 -0.36 -2.50 16 30 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 31 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.49 4.95 -52.49 -0.26 1.23 16 37 H 0.12 1.65 6.11 -52.49 -0.32 1.33 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 40 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 41 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.04 0.94 6.17 -51.92 -0.32 0.62 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 44 H 0.14 2.70 6.11 -52.49 -0.32 2.38 16 45 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.13 1.14 6.28 -52.48 -0.33 0.81 16 LS Contribution 399.11 15.07 6.01 6.01 Total: -1.00 -29.14 399.11 -8.82 -37.96 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.01 Total: 2.33 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -4.58 Total: -16.40 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.97 Total: -41.71 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.14 -8.82 -37.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001735964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.306 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds