Wall clock time and date at job start Tue Mar 31 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35887 * 116.99976 * 2 1 4 4 C 1.38847 * 119.92006 * 179.97438 * 3 2 1 5 5 C 1.37882 * 120.08063 * 180.02562 * 4 3 2 6 6 C 1.39525 * 119.91737 * 359.97438 * 5 4 3 7 7 C 1.48093 * 120.07899 * 180.02562 * 6 5 4 8 8 C 1.43199 * 120.00091 * 292.11050 * 7 6 5 9 9 N 7.24426 * 122.34532 * 19.68674 * 2 1 3 10 10 C 1.36169 * 120.00315 * 112.10820 * 7 6 5 11 11 C 1.46712 * 119.99932 * 352.78247 * 10 7 6 12 12 C 1.40115 * 120.10815 * 323.35539 * 11 10 7 13 13 C 1.37110 * 119.89482 * 179.97438 * 12 11 10 14 14 C 1.39224 * 120.10243 * 359.97438 * 13 12 11 15 15 N 1.39240 * 119.89010 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.46494 * 120.00051 * 179.97438 * 15 14 13 18 18 C 1.50700 * 109.47269 * 90.00054 * 17 15 14 19 19 H 1.08009 * 119.99858 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00146 * 180.02562 * 18 17 15 21 21 N 1.31507 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47403 * 59.99943 * 22 20 18 24 24 H 1.48497 * 109.47396 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47425 * 299.99866 * 22 20 18 26 26 C 1.39218 * 120.21553 * 0.02562 * 14 13 12 27 27 C 1.37107 * 120.10715 * 0.02562 * 26 14 13 28 28 C 1.39520 * 119.84001 * 0.27161 * 6 5 4 29 29 C 1.37878 * 119.91795 * 359.45301 * 28 6 5 30 30 H 1.09010 * 109.47038 * 300.00241 * 1 2 3 31 31 H 1.08994 * 109.46967 * 60.00202 * 1 2 3 32 32 H 1.09004 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.07997 * 119.96177 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.03737 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.00093 * 172.78655 * 10 7 6 36 36 H 1.08001 * 120.05114 * 0.26982 * 12 11 10 37 37 H 1.07998 * 119.94885 * 180.02562 * 13 12 11 38 38 H 1.09004 * 109.46873 * 90.00313 * 16 15 14 39 39 H 1.09005 * 109.46803 * 209.99760 * 16 15 14 40 40 H 1.08996 * 109.47710 * 329.99887 * 16 15 14 41 41 H 1.09000 * 109.47467 * 209.99931 * 17 15 14 42 42 H 1.09007 * 109.47222 * 330.00142 * 17 15 14 43 43 H 0.97000 * 120.00466 * 180.02562 * 21 20 18 44 44 H 1.07996 * 119.94469 * 179.97438 * 26 14 13 45 45 H 1.08004 * 120.05435 * 179.97438 * 27 26 14 46 46 H 1.07997 * 120.04245 * 179.70086 * 28 6 5 47 47 H 1.08003 * 119.95584 * 180.24608 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4326 1.2815 0.0005 5 6 4.0620 2.5083 0.0011 6 6 3.3037 3.6795 0.0005 7 6 3.9760 4.9990 0.0005 8 6 4.7165 5.4253 1.1497 9 7 5.3049 5.7625 2.0618 10 6 3.8901 5.8070 -1.0922 11 6 3.2689 5.3100 -2.3249 12 6 3.4480 3.9759 -2.7138 13 6 2.8651 3.5159 -3.8664 14 6 2.0958 4.3721 -4.6497 15 7 1.5062 3.9005 -5.8196 16 6 1.6964 2.5055 -6.2249 17 6 0.6958 4.7991 -6.6453 18 6 1.5768 5.4784 -7.6619 19 1 2.6347 5.2626 -7.6899 20 6 1.0325 6.3761 -8.5557 21 7 -0.2555 6.6393 -8.5213 22 14 2.1244 7.2175 -9.8163 23 1 2.7627 6.1928 -10.6810 24 1 1.3030 8.1286 -10.6532 25 1 3.1755 7.9998 -9.1174 26 6 1.9149 5.6985 -4.2674 27 6 2.4947 6.1680 -3.1171 28 6 1.9105 3.6045 0.0052 29 6 1.2880 2.3742 -0.0011 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.0189 0.3746 0.0014 34 1 5.1406 2.5625 0.0019 35 1 4.2793 6.8136 -1.0514 36 1 4.0403 3.3096 -2.1041 37 1 3.0022 2.4876 -4.1668 38 1 0.9053 1.8912 -5.7948 39 1 1.6609 2.4350 -7.3120 40 1 2.6645 2.1526 -5.8694 41 1 -0.0751 4.2246 -7.1587 42 1 0.2266 5.5512 -6.0109 43 1 -0.6386 7.2707 -9.1503 44 1 1.3177 6.3590 -4.8785 45 1 2.3542 7.1972 -2.8216 46 1 1.3204 4.5089 0.0097 47 1 0.2096 2.3154 -0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001735964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:21 Heat of formation + Delta-G solvation = 58.070894 kcal Electronic energy + Delta-G solvation = -29295.070775 eV Core-core repulsion = 25408.332395 eV Total energy + Delta-G solvation = -3886.738379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.158 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19497 -40.39140 -39.02348 -37.49398 -37.26145 -35.02295 -34.36666 -32.06465 -31.93995 -31.02891 -29.81236 -29.37350 -27.94821 -26.80400 -25.27351 -23.70315 -23.17042 -23.00223 -22.38032 -20.93938 -19.13349 -18.61586 -18.44287 -18.13237 -16.99990 -16.93791 -16.57738 -16.38809 -16.18832 -15.53880 -15.35986 -15.31802 -14.97827 -14.82654 -14.47158 -14.45216 -14.28591 -14.21875 -14.12491 -14.01421 -13.81163 -13.43340 -13.29479 -13.11146 -13.03357 -12.76806 -12.67746 -12.54163 -12.51119 -12.27341 -12.08899 -11.85976 -11.77562 -11.71098 -11.42025 -10.90574 -10.60952 -9.89685 -9.86421 -9.70791 -8.91437 -8.30738 -7.71641 -6.35185 -0.19859 0.43125 0.50154 0.81748 1.17293 1.40821 1.41593 1.49764 1.72913 2.35699 2.42100 2.45207 2.61611 2.77651 3.08549 3.09480 3.24684 3.84690 3.96521 4.04777 4.09494 4.23691 4.28226 4.35529 4.41646 4.43496 4.47527 4.60570 4.63961 4.70490 4.75606 4.77182 4.79490 4.86386 4.97774 5.01919 5.07702 5.16099 5.17894 5.29022 5.36419 5.41580 5.51035 5.61567 5.65483 5.71771 5.73591 5.83848 5.90596 6.08259 6.16437 6.48751 6.50252 6.57799 6.82612 6.90981 7.36643 8.84831 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.011289 B = 0.002924 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.722741 B = 9573.486152 C =11295.096575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.158 4.158 5 C -0.074 4.074 6 C -0.073 4.073 7 C -0.063 4.063 8 C 0.286 3.714 9 N -0.478 5.478 10 C 0.042 3.958 11 C -0.166 4.166 12 C -0.028 4.028 13 C -0.223 4.223 14 C 0.235 3.765 15 N -0.621 5.621 16 C 0.094 3.906 17 C 0.264 3.736 18 C -0.542 4.542 19 H 0.051 0.949 20 C 0.016 3.984 21 N -0.925 5.925 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.271 1.271 26 C -0.222 4.222 27 C -0.036 4.036 28 C -0.056 4.056 29 C -0.209 4.209 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.010 0.990 42 H 0.017 0.983 43 H 0.267 0.733 44 H 0.102 0.898 45 H 0.140 0.860 46 H 0.133 0.867 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -10.208 16.139 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.176 4.176 5 C -0.092 4.092 6 C -0.074 4.074 7 C -0.067 4.067 8 C -0.027 4.027 9 N -0.155 5.155 10 C 0.020 3.980 11 C -0.168 4.168 12 C -0.046 4.046 13 C -0.246 4.246 14 C 0.128 3.872 15 N -0.326 5.326 16 C -0.049 4.049 17 C 0.143 3.857 18 C -0.581 4.581 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.565 5.565 22 Si 0.783 3.217 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.244 4.244 27 C -0.054 4.054 28 C -0.074 4.074 29 C -0.227 4.227 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.158 0.842 46 H 0.151 0.849 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.307 -9.906 17.247 20.350 hybrid contribution -0.494 0.610 -1.524 1.715 sum 3.813 -9.296 15.722 18.659 Atomic orbital electron populations 1.23291 0.76832 1.05355 1.02014 1.86032 1.23090 1.27085 1.88576 1.19315 0.92789 0.84409 0.96086 1.20500 0.91373 0.99047 1.06690 1.21243 1.00547 0.90450 0.96965 1.18256 0.92806 0.90873 1.05502 1.16376 1.04737 0.96508 0.89102 1.25946 0.92148 0.92129 0.92496 1.81271 1.12430 1.09930 1.11835 1.22461 0.89002 0.97967 0.88578 1.18445 1.06703 0.94332 0.97340 1.21286 0.95307 0.94127 0.93922 1.20540 1.05512 1.00057 0.98469 1.18420 0.90106 0.93076 0.85629 1.47002 1.52468 1.11061 1.22052 1.21661 1.01648 0.81276 1.00315 1.18834 0.89666 0.88354 0.88860 1.21737 0.94999 1.24820 1.16527 0.93088 1.25713 0.96232 0.97093 0.99316 1.70012 1.12456 1.35700 1.38315 0.85614 0.78753 0.78492 0.78875 1.19583 1.20678 1.19655 1.20608 1.08267 0.95016 1.00548 1.21039 0.93434 0.99433 0.91544 1.21115 0.93375 0.97606 0.95344 1.21315 1.00834 0.91985 1.08588 0.91723 0.92369 0.86468 0.84085 0.83777 0.82969 0.84188 0.85373 0.92724 0.92383 0.90213 0.97224 0.96472 0.92403 0.88026 0.84198 0.84940 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.54 10.49 -92.28 -0.97 -7.51 16 3 C 0.12 2.42 6.69 22.56 0.15 2.57 16 4 C -0.16 -2.95 9.97 22.33 0.22 -2.72 16 5 C -0.07 -1.33 8.01 22.50 0.18 -1.15 16 6 C -0.07 -1.41 2.92 -20.04 -0.06 -1.47 16 7 C -0.06 -1.19 5.19 -19.90 -0.10 -1.30 16 8 C 0.29 6.36 15.34 88.33 1.36 7.72 16 9 N -0.48 -12.90 18.54 19.01 0.35 -12.55 16 10 C 0.04 0.77 9.49 24.00 0.23 1.00 16 11 C -0.17 -3.92 5.14 -20.15 -0.10 -4.02 16 12 C -0.03 -0.69 7.95 22.46 0.18 -0.51 16 13 C -0.22 -6.56 9.16 22.24 0.20 -6.36 16 14 C 0.24 8.54 6.56 38.44 0.25 8.79 16 15 N -0.62 -24.88 2.98 -726.37 -2.16 -27.05 16 16 C 0.09 3.00 10.17 127.77 1.30 4.30 16 17 C 0.26 12.97 4.90 85.63 0.42 13.39 16 18 C -0.54 -28.86 9.39 25.60 0.24 -28.62 16 19 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 20 C 0.02 0.86 5.46 84.65 0.46 1.32 16 21 N -0.93 -52.22 13.29 21.44 0.28 -51.94 16 22 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C -0.22 -8.07 9.16 22.24 0.20 -7.86 16 27 C -0.04 -0.99 9.77 22.46 0.22 -0.77 16 28 C -0.06 -1.11 8.91 22.49 0.20 -0.91 16 29 C -0.21 -4.04 9.02 22.33 0.20 -3.84 16 30 H 0.06 0.69 7.66 -2.38 -0.02 0.67 16 31 H 0.06 0.75 7.65 -2.39 -0.02 0.73 16 32 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.14 2.98 4.95 -2.91 -0.01 2.97 16 37 H 0.13 3.39 6.11 -2.91 -0.02 3.37 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.95 8.07 -2.38 -0.02 1.93 16 40 H 0.08 2.16 6.17 -2.39 -0.01 2.14 16 41 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 42 H 0.02 0.91 6.17 -2.38 -0.01 0.89 16 43 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.10 4.35 6.11 -2.91 -0.02 4.33 16 45 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 46 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.14 2.26 6.28 -2.91 -0.02 2.24 16 Total: -1.00 -64.16 399.11 7.39 -56.77 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.00 Total: 16.98 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 6.86 Total: -19.08 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.53 Total: -91.53 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.97 Total: -7.51 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.16 7.39 -56.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001735964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.839 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds