Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99801 * 2 1 4 4 C 1.53002 * 109.46810 * 66.05274 * 3 2 1 5 5 C 1.53003 * 109.46892 * 174.72194 * 4 3 2 6 6 C 1.47208 * 109.46940 * 60.71218 * 5 4 3 7 7 N 4.93379 * 89.43460 * 352.95684 * 2 1 3 8 8 C 1.53004 * 109.46927 * 180.71012 * 5 4 3 9 9 C 1.50696 * 109.46761 * 180.25378 * 8 5 4 10 10 H 1.08002 * 120.00536 * 357.25091 * 9 8 5 11 11 C 1.37884 * 119.99986 * 177.24402 * 9 8 5 12 12 N 1.31512 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00319 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47151 * 89.99722 * 13 11 9 15 15 H 1.48500 * 109.47175 * 210.00301 * 13 11 9 16 16 H 1.48502 * 109.46771 * 330.00214 * 13 11 9 17 17 C 1.50694 * 109.47249 * 300.71334 * 5 4 3 18 18 C 1.38232 * 120.00314 * 122.09887 * 17 5 4 19 19 C 1.38234 * 120.00526 * 179.81003 * 18 17 5 20 20 C 1.38241 * 119.99554 * 0.39709 * 19 18 17 21 21 C 1.38234 * 119.99972 * 359.85740 * 20 19 18 22 22 C 1.38234 * 119.99977 * 302.37705 * 17 5 4 23 23 C 1.46898 * 110.99897 * 236.05038 * 2 1 3 24 24 C 1.50706 * 109.47007 * 293.95588 * 23 2 1 25 25 C 1.38240 * 119.99449 * 269.72482 * 24 23 2 26 26 C 1.38237 * 119.99708 * 179.76640 * 25 24 23 27 27 C 1.38241 * 119.99783 * 0.50748 * 26 25 24 28 28 C 1.38238 * 119.99702 * 359.74622 * 27 26 25 29 29 C 1.38224 * 120.00102 * 89.99769 * 24 23 2 30 30 H 1.09004 * 109.47462 * 59.99197 * 1 2 3 31 31 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46890 * 299.99761 * 1 2 3 33 33 H 1.08995 * 109.47311 * 306.04996 * 3 2 1 34 34 H 1.08995 * 109.46635 * 186.04603 * 3 2 1 35 35 H 1.08994 * 109.47618 * 54.72096 * 4 3 2 36 36 H 1.09005 * 109.46924 * 294.72106 * 4 3 2 37 37 H 1.08995 * 109.46966 * 60.25866 * 8 5 4 38 38 H 1.09000 * 109.47128 * 300.25944 * 8 5 4 39 39 H 0.96994 * 120.00466 * 180.02562 * 12 11 9 40 40 H 1.08008 * 119.99707 * 0.02562 * 18 17 5 41 41 H 1.07997 * 120.00485 * 180.23561 * 19 18 17 42 42 H 1.07996 * 119.99940 * 179.83493 * 20 19 18 43 43 H 1.07997 * 119.99969 * 179.97438 * 21 20 19 44 44 H 1.08010 * 119.99943 * 359.97438 * 22 17 5 45 45 H 1.08998 * 109.47061 * 53.95076 * 23 2 1 46 46 H 1.08997 * 109.47441 * 173.95000 * 23 2 1 47 47 H 1.08002 * 120.00041 * 359.97438 * 25 24 23 48 48 H 1.07992 * 120.00170 * 180.23127 * 26 25 24 49 49 H 1.07994 * 119.99534 * 179.72456 * 27 26 25 50 50 H 1.07997 * 119.99096 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00338 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3184 5 6 2.2902 3.4373 1.3741 6 6 1.7992 4.2608 0.2570 7 7 1.4203 4.8963 -0.6049 8 6 1.9407 4.1159 2.7001 9 6 2.5843 5.4775 2.7523 10 1 3.2188 5.8064 1.9426 11 6 2.3630 6.3037 3.8339 12 7 1.5907 5.9031 4.8201 13 14 3.1602 7.9918 3.8984 14 1 2.2589 8.9892 3.2675 15 1 3.4043 8.3702 5.3134 16 1 4.4512 7.9578 3.1653 17 6 3.7855 3.2849 1.2665 18 6 4.4734 3.9182 0.2484 19 6 5.8456 3.7816 0.1519 20 6 6.5289 3.0049 1.0689 21 6 5.8404 2.3674 2.0840 22 6 4.4687 2.5071 2.1826 23 6 1.9954 -0.7659 -1.1376 24 6 1.6368 -2.2204 -0.9730 25 6 2.4965 -3.0729 -0.3057 26 6 2.1654 -4.4060 -0.1505 27 6 0.9795 -4.8888 -0.6716 28 6 0.1224 -4.0373 -1.3434 29 6 0.4511 -2.7031 -1.4941 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.5611 1.9274 -0.8308 34 1 3.0797 1.3444 -0.1082 35 1 1.9854 1.4519 2.1528 36 1 0.5491 2.1685 1.3834 37 1 2.3082 3.5084 3.5271 38 1 0.8588 4.2220 2.7800 39 1 1.4346 6.4843 5.5808 40 1 3.9390 4.5226 -0.4698 41 1 6.3834 4.2794 -0.6413 42 1 7.6006 2.8960 0.9920 43 1 6.3743 1.7603 2.8001 44 1 3.9308 2.0089 2.9757 45 1 1.5610 -0.3871 -2.0628 46 1 3.0797 -0.6610 -1.1758 47 1 3.4252 -2.6966 0.0972 48 1 2.8352 -5.0712 0.3740 49 1 0.7230 -5.9313 -0.5542 50 1 -0.8038 -4.4147 -1.7509 51 1 -0.2183 -2.0381 -2.0196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001870401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = 74.546579 kcal Electronic energy + Delta-G solvation = -30064.198258 eV Core-core repulsion = 26314.007413 eV Total energy + Delta-G solvation = -3750.190846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.87703 -39.46072 -37.45960 -36.35455 -34.35832 -32.74672 -31.81578 -31.06963 -30.46928 -29.50302 -28.73762 -27.33261 -25.68760 -23.73555 -22.91692 -22.65994 -21.96124 -21.33186 -20.69786 -20.46200 -17.30537 -16.93786 -16.53177 -15.88732 -15.73432 -15.58800 -15.44524 -14.79075 -14.73729 -14.30487 -14.13886 -13.97827 -13.64504 -13.48863 -13.37019 -13.14203 -12.92207 -12.80012 -12.60979 -12.50214 -12.17350 -11.91256 -11.88932 -11.70260 -11.57344 -11.41834 -11.32748 -11.13752 -11.09329 -11.02045 -10.87054 -10.65151 -10.51531 -10.42074 -10.22980 -9.59294 -9.23622 -9.05229 -8.94013 -8.46891 -8.42641 -8.31982 -8.13549 -6.08699 -4.10307 1.17929 1.26118 1.83809 1.87183 3.29832 3.36419 3.40423 3.44597 3.54331 3.56821 4.09949 4.26351 4.41685 4.57283 4.62311 4.69400 4.84746 4.94816 5.02103 5.12833 5.25941 5.27938 5.30723 5.34996 5.35785 5.39035 5.42598 5.48638 5.54690 5.61249 5.62828 5.65790 5.83547 5.85673 5.90164 5.96688 6.01002 6.02768 6.20606 6.29745 6.35647 6.37249 6.42714 6.44639 6.49429 6.51004 6.84197 6.90148 6.92653 7.02629 7.05151 7.08441 7.39572 7.40631 7.49786 7.86515 8.22140 8.30721 8.92695 9.54620 11.02210 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.002722 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.635013 B =10283.401306 C =11025.988637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.530 5.530 3 C 0.052 3.948 4 C -0.100 4.100 5 C 0.075 3.925 6 C 0.253 3.747 7 N -0.469 5.469 8 C 0.041 3.959 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.886 3.114 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.028 4.028 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.095 4.095 23 C 0.090 3.910 24 C -0.072 4.072 25 C -0.097 4.097 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.115 4.115 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -19.891 -9.331 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.076 4.076 4 C -0.139 4.139 5 C 0.070 3.930 6 C -0.064 4.064 7 N -0.144 5.144 8 C 0.003 3.997 9 C -0.556 4.556 10 H 0.075 0.925 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.714 3.286 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.029 4.029 18 C -0.139 4.139 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.037 4.037 24 C -0.072 4.072 25 C -0.116 4.116 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.133 4.133 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.144 0.856 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.373 -19.076 -10.049 21.691 hybrid contribution 0.220 1.423 -0.216 1.456 sum 2.593 -17.653 -10.264 20.584 Atomic orbital electron populations 1.22551 0.87570 1.02091 1.01074 1.62025 1.07986 1.13683 1.41682 1.22305 1.00676 0.87164 0.97423 1.21722 1.00959 0.93140 0.98080 1.17673 0.90882 0.91792 0.92610 1.28803 0.92251 0.92690 0.92658 1.81038 1.09944 1.10268 1.13180 1.19289 0.98014 0.95514 0.86891 1.21086 1.29562 0.99896 1.05096 0.92481 1.24893 0.95057 0.98164 0.95588 1.69924 1.37347 1.36951 1.08775 0.86664 0.80006 0.84665 0.77260 1.20716 1.21069 1.19735 1.19299 0.93466 0.95682 0.94440 1.21054 0.94513 0.99727 0.98620 1.20963 0.94140 0.99350 0.99387 1.20980 0.99194 0.98875 0.96089 1.21012 0.94280 1.00150 0.98159 1.20839 0.93990 0.98458 0.97983 1.21071 1.00690 0.89725 0.92209 1.19767 0.94625 0.95087 0.97745 1.21063 0.99683 0.93136 0.97707 1.21160 0.97086 0.95732 1.00008 1.21131 0.94829 0.99603 0.98678 1.21094 0.99606 0.93704 0.99716 1.21070 0.96467 0.95595 1.00206 0.95872 0.91179 0.90651 0.95081 0.90030 0.88831 0.90966 0.94087 0.95054 0.92837 0.87014 0.86896 0.86892 0.86460 0.85634 0.94150 0.89793 0.85814 0.86166 0.86388 0.86334 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.98 60.07 0.54 0.71 16 2 N -0.53 -6.38 4.75 -244.36 -1.16 -7.55 16 3 C 0.05 0.70 4.45 -3.82 -0.02 0.68 16 4 C -0.10 -1.50 3.82 -26.73 -0.10 -1.60 16 5 C 0.07 1.37 0.36 -158.44 -0.06 1.32 16 6 C 0.25 5.14 9.68 -20.76 -0.20 4.94 16 7 N -0.47 -10.15 18.46 42.15 0.78 -9.37 16 8 C 0.04 0.93 3.87 -27.88 -0.11 0.82 16 9 C -0.52 -13.66 7.94 -34.44 -0.27 -13.93 16 10 H 0.06 1.54 6.92 -52.49 -0.36 1.17 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.03 -0.48 2.43 -104.63 -0.25 -0.74 16 18 C -0.12 -2.10 8.93 -39.58 -0.35 -2.45 16 19 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 20 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 21 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 22 C -0.09 -1.50 8.72 -39.58 -0.35 -1.85 16 23 C 0.09 0.97 5.12 -4.97 -0.03 0.94 16 24 C -0.07 -0.74 4.89 -104.62 -0.51 -1.25 16 25 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 26 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 28 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 29 C -0.11 -1.09 7.90 -39.59 -0.31 -1.41 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.75 5.89 -51.93 -0.31 0.44 16 32 H 0.07 0.88 6.59 -51.92 -0.34 0.54 16 33 H 0.03 0.46 7.42 -51.93 -0.39 0.07 16 34 H 0.08 1.11 6.80 -51.93 -0.35 0.75 16 35 H 0.09 1.32 7.28 -51.93 -0.38 0.95 16 36 H 0.07 1.08 6.81 -51.93 -0.35 0.72 16 37 H 0.04 0.95 7.52 -51.93 -0.39 0.56 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.11 2.05 6.43 -52.48 -0.34 1.72 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.13 1.87 7.11 -52.48 -0.37 1.50 16 45 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 46 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 51 H 0.12 1.01 7.98 -52.49 -0.42 0.59 16 LS Contribution 413.58 15.07 6.23 6.23 Total: -1.00 -30.04 413.58 -11.10 -41.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.77 Total: 1.95 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -4.89 Total: -24.38 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.35 Total: -41.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.04 -11.10 -41.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001870401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.686 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds