Wall clock time and date at job start Tue Mar 31 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47314 * 180.27157 * 3 2 1 5 5 H 1.48500 * 109.46816 * 300.26835 * 3 2 1 6 6 H 1.48493 * 109.47595 * 60.27007 * 3 2 1 7 7 C 1.38765 * 119.99790 * 180.26755 * 2 1 3 8 8 H 1.07999 * 119.99882 * 179.72968 * 7 2 1 9 9 S 1.76198 * 119.99824 * 359.72974 * 7 2 1 10 10 C 1.76204 * 99.99829 * 179.97438 * 9 7 2 11 11 N 1.32652 * 120.52731 * 359.97438 * 10 9 7 12 12 C 1.31954 * 121.13016 * 180.02562 * 11 10 9 13 13 N 1.31368 * 122.18423 * 359.97438 * 12 11 10 14 14 C 1.33878 * 121.09338 * 0.02562 * 13 12 11 15 15 S 1.75722 * 131.08201 * 180.02562 * 14 13 12 16 16 C 1.75314 * 92.36695 * 179.46623 * 15 14 13 17 17 C 1.33292 * 111.30020 * 0.41462 * 16 15 14 18 18 C 1.48222 * 122.79467 * 179.58480 * 17 16 15 19 19 C 1.39434 * 120.11693 * 129.70169 * 18 17 16 20 20 C 1.37979 * 119.88119 * 179.74719 * 19 18 17 21 21 C 1.38448 * 120.11599 * 0.54920 * 20 19 18 22 22 Cl 1.73607 * 119.87945 * 179.72370 * 21 20 19 23 23 C 1.38445 * 120.23921 * 359.70429 * 21 20 19 24 24 C 1.37982 * 120.11272 * 0.02562 * 23 21 20 25 25 C 1.39681 * 119.04479 * 359.73183 * 14 13 12 26 26 H 0.97000 * 120.00134 * 359.73333 * 1 2 3 27 27 H 1.07995 * 118.90558 * 179.97438 * 12 11 10 28 28 H 1.08003 * 124.35020 * 179.97438 * 16 15 14 29 29 H 1.08007 * 120.05656 * 0.02562 * 19 18 17 30 30 H 1.08005 * 119.94062 * 180.27832 * 20 19 18 31 31 H 1.07996 * 119.94282 * 179.97438 * 23 21 20 32 32 H 1.08001 * 120.05619 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 -0.0066 5 1 1.8861 2.3992 -1.2092 6 1 1.8961 2.3936 1.2157 7 6 2.0095 -1.2018 -0.0056 8 1 3.0895 -1.2018 -0.0100 9 16 1.1285 -2.7276 -0.0055 10 6 2.4782 -3.8603 -0.0144 11 7 3.7289 -3.4181 -0.0194 12 6 4.7485 -4.2556 -0.0266 13 7 4.5835 -5.5589 -0.0287 14 6 3.3594 -6.1008 -0.0241 15 16 2.8396 -7.7794 -0.0248 16 6 1.1451 -7.3306 0.0001 17 6 0.9950 -6.0062 -0.0008 18 6 -0.3335 -5.3488 0.0089 19 6 -0.6113 -4.3465 0.9375 20 6 -1.8478 -3.7341 0.9388 21 6 -2.8156 -4.1213 0.0277 22 17 -4.3717 -3.3516 0.0395 23 6 -2.5468 -5.1196 -0.8931 24 6 -1.3117 -5.7346 -0.9067 25 6 2.2450 -5.2588 -0.0112 26 1 -0.4850 0.8400 0.0039 27 1 5.7519 -3.8564 -0.0309 28 1 0.3278 -8.0365 0.0075 29 1 0.1416 -4.0468 1.6516 30 1 -2.0625 -2.9545 1.6548 31 1 -3.3055 -5.4181 -1.6014 32 1 -1.1029 -6.5130 -1.6256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001911874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:38 Heat of formation + Delta-G solvation = 76.131457 kcal Electronic energy + Delta-G solvation = -22313.953269 eV Core-core repulsion = 18903.571663 eV Total energy + Delta-G solvation = -3410.381606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 347.985 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25335 -39.03411 -36.48830 -35.50030 -32.90128 -32.83802 -30.96820 -30.59831 -29.02734 -25.94525 -24.67296 -23.92116 -22.76148 -22.41619 -19.72781 -19.00045 -17.49801 -17.38559 -16.68680 -15.81265 -15.40043 -15.11415 -15.01822 -14.51739 -14.25378 -14.05915 -13.73692 -13.34719 -13.24979 -12.97997 -12.69633 -12.05899 -11.79700 -11.51800 -11.33119 -11.30072 -11.23627 -11.03260 -10.82547 -10.73859 -10.60516 -10.46352 -10.27736 -9.44530 -9.37999 -8.79303 -8.58903 -8.48215 -8.26595 -7.66558 -7.02560 -6.63459 -4.36876 0.72003 1.28189 1.45951 1.48170 1.57746 2.08180 2.37278 2.49947 2.79634 3.06438 3.13262 3.21863 3.81105 3.94994 4.23868 4.66733 4.80492 4.81967 4.86056 4.95249 5.07282 5.12224 5.32064 5.52885 5.54503 5.60391 5.67649 5.92690 6.02901 6.20579 6.27792 6.47717 6.55573 6.73278 6.77605 7.01464 7.40711 7.46458 8.26136 8.68937 8.88410 10.40476 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.007283 B = 0.006549 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3843.398267 B = 4274.192335 C = 7939.467674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.079 3.921 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.561 4.561 8 H 0.112 0.888 9 S 0.199 5.801 10 C 0.163 3.837 11 N -0.527 5.527 12 C 0.326 3.674 13 N -0.545 5.545 14 C 0.113 3.887 15 S 0.132 5.868 16 C -0.214 4.214 17 C -0.008 4.008 18 C -0.034 4.034 19 C -0.060 4.060 20 C -0.092 4.092 21 C -0.024 4.024 22 Cl -0.080 7.080 23 C -0.119 4.119 24 C -0.090 4.090 25 C -0.191 4.191 26 H 0.277 0.723 27 H 0.190 0.810 28 H 0.172 0.828 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -11.290 0.425 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.131 4.131 3 Si 0.752 3.248 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.709 4.709 8 H 0.130 0.870 9 S 0.456 5.544 10 C -0.097 4.097 11 N -0.249 5.249 12 C 0.030 3.970 13 N -0.269 5.269 14 C -0.138 4.138 15 S 0.391 5.609 16 C -0.349 4.349 17 C -0.021 4.021 18 C -0.038 4.038 19 C -0.084 4.084 20 C -0.111 4.111 21 C -0.051 4.051 22 Cl -0.051 7.051 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.213 4.213 26 H 0.087 0.913 27 H 0.207 0.793 28 H 0.189 0.811 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.869 -12.083 0.384 12.693 hybrid contribution 0.358 2.444 -0.100 2.472 sum -3.511 -9.639 0.284 10.262 Atomic orbital electron populations 1.69934 1.06136 1.28777 1.44715 1.25173 0.95116 0.99941 0.92899 0.85962 0.80276 0.80495 0.78111 1.18826 1.20258 1.20228 1.23968 0.98321 0.91185 1.57423 0.87047 1.83955 0.99872 0.95988 1.74572 1.24703 0.98543 0.93895 0.92533 1.68790 0.98294 1.38081 1.19738 1.24763 0.98658 0.84315 0.89310 1.67999 1.21683 1.14943 1.22285 1.23436 0.92606 0.98361 0.99443 1.83807 0.97718 1.01152 1.78252 1.25090 0.99714 0.98066 1.12043 1.18067 0.91186 0.91688 1.01192 1.18376 0.91556 0.96858 0.97041 1.21101 0.95656 0.92865 0.98736 1.20900 0.92036 0.99464 0.98728 1.20941 0.87505 0.97322 0.99292 1.98349 1.27729 1.80938 1.98126 1.20808 0.97586 0.96616 0.98801 1.21008 0.91927 0.99842 0.98101 1.19930 0.92917 0.94597 1.13878 0.91349 0.79313 0.81050 0.84202 0.84586 0.85190 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.47 13.22 55.49 0.73 -21.73 16 2 C 0.08 2.03 5.49 -17.47 -0.10 1.93 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.56 -14.64 9.27 30.93 0.29 -14.35 16 8 H 0.11 2.98 6.58 -52.49 -0.35 2.63 16 9 S 0.20 4.61 15.54 -107.50 -1.67 2.94 16 10 C 0.16 3.59 7.06 -15.84 -0.11 3.48 16 11 N -0.53 -11.63 8.58 -12.96 -0.11 -11.74 16 12 C 0.33 6.19 12.26 -92.38 -1.13 5.06 16 13 N -0.55 -10.42 10.47 -13.36 -0.14 -10.56 16 14 C 0.11 2.10 7.68 -16.12 -0.12 1.98 16 15 S 0.13 1.85 23.22 -107.50 -2.50 -0.64 16 16 C -0.21 -2.86 10.64 29.01 0.31 -2.55 16 17 C -0.01 -0.13 5.50 -104.57 -0.57 -0.71 16 18 C -0.03 -0.55 4.88 -104.91 -0.51 -1.06 16 19 C -0.06 -1.02 6.02 -39.23 -0.24 -1.25 16 20 C -0.09 -1.49 9.78 -39.60 -0.39 -1.88 16 21 C -0.02 -0.36 6.32 -39.43 -0.25 -0.61 16 22 Cl -0.08 -1.13 28.95 -51.86 -1.50 -2.63 16 23 C -0.12 -1.60 9.81 -39.60 -0.39 -1.99 16 24 C -0.09 -1.23 9.59 -39.23 -0.38 -1.60 16 25 C -0.19 -3.73 5.98 -105.05 -0.63 -4.36 16 26 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.19 2.83 8.06 -52.49 -0.42 2.40 16 28 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.14 2.49 6.80 -49.52 -0.34 2.16 16 30 H 0.14 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -28.50 323.09 -11.49 -39.99 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -1.93 Total: 2.36 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -4.22 Total: -17.89 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.48 Total: -44.03 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -4.17 Total: 2.30 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.50 -11.49 -39.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001911874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.123 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds