Wall clock time and date at job start Tue Mar 31 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35905 * 116.99771 * 2 1 4 4 C 1.36410 * 119.28907 * 359.97438 * 3 2 1 5 5 C 1.40511 * 119.54847 * 179.97438 * 4 3 2 6 6 N 1.33478 * 121.66494 * 179.97438 * 5 4 3 7 7 C 1.32056 * 119.57418 * 180.02562 * 6 5 4 8 8 C 1.47763 * 132.40285 * 179.97438 * 7 6 5 9 9 C 1.39174 * 133.26902 * 359.97438 * 8 7 6 10 10 C 1.37981 * 119.74732 * 179.21708 * 9 8 7 11 11 C 1.38589 * 120.19436 * 0.71405 * 10 9 8 12 12 C 1.37941 * 120.59885 * 359.54748 * 11 10 9 13 13 C 1.39138 * 120.04260 * 359.97438 * 12 11 10 14 14 N 1.38580 * 132.19057 * 180.02562 * 13 12 11 15 15 C 1.37137 * 124.79141 * 359.97438 * 14 13 12 16 16 H 1.08006 * 119.99740 * 30.34584 * 15 14 13 17 17 C 1.38798 * 120.00429 * 210.34185 * 15 14 13 18 18 N 1.31510 * 119.99567 * 24.83429 * 17 15 14 19 19 Si 1.86796 * 120.00260 * 204.84020 * 17 15 14 20 20 H 1.48498 * 109.47264 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46716 * 299.99614 * 19 17 15 22 22 H 1.48499 * 109.47145 * 59.99451 * 19 17 15 23 23 C 1.38349 * 110.42053 * 179.73971 * 14 13 12 24 24 N 1.32210 * 131.28453 * 180.25632 * 23 14 13 25 25 C 1.33535 * 119.81067 * 179.97438 * 24 23 14 26 26 C 1.40499 * 121.62061 * 179.97438 * 25 24 23 27 27 C 1.36428 * 119.58643 * 180.02562 * 26 25 24 28 28 O 1.35875 * 119.26091 * 180.02562 * 27 26 25 29 29 C 1.42903 * 117.00155 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47658 * 60.00194 * 1 2 3 31 31 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47442 * 299.99994 * 1 2 3 33 33 H 1.08004 * 120.22403 * 0.02562 * 4 3 2 34 34 H 1.07994 * 120.12765 * 0.03058 * 9 8 7 35 35 H 1.07993 * 119.90368 * 180.26031 * 10 9 8 36 36 H 1.07995 * 119.70323 * 179.56988 * 11 10 9 37 37 H 1.07993 * 119.97955 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99972 * 5.76793 * 18 17 15 39 39 H 1.07998 * 120.20861 * 0.02562 * 26 25 24 40 40 H 1.09001 * 109.47081 * 179.97438 * 29 28 27 41 41 H 1.08993 * 109.47439 * 300.00792 * 29 28 27 42 42 H 1.09004 * 109.46346 * 60.00804 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2887 2.3456 -0.0005 5 6 1.9209 3.6005 0.0000 6 7 1.2216 4.7374 -0.0010 7 6 1.8584 5.8943 -0.0009 8 6 1.3829 7.2934 -0.0023 9 6 0.1165 7.8705 -0.0046 10 6 -0.0097 9.2445 0.0109 11 6 1.1193 10.0482 0.0138 12 6 2.3799 9.4881 0.0106 13 6 2.5274 8.1046 0.0050 14 7 3.6471 7.2880 0.0014 15 6 4.9429 7.7368 0.0023 16 1 5.1893 8.6746 0.4782 17 6 5.9380 6.9860 -0.6082 18 7 5.6300 6.1467 -1.5727 19 14 7.7144 7.1676 -0.0598 20 1 8.5752 6.2622 -0.8625 21 1 8.1524 8.5726 -0.2582 22 1 7.8275 6.8121 1.3775 23 6 3.2731 5.9560 0.0020 24 7 3.9938 4.8476 0.0039 25 6 3.3843 3.6595 0.0046 26 6 4.1126 2.4580 0.0061 27 6 3.4472 1.2669 0.0062 28 8 4.1581 0.1090 0.0082 29 6 5.5826 0.2223 0.0094 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2107 2.2799 -0.0005 34 1 -0.7641 7.2454 -0.0053 35 1 -0.9912 9.6950 0.0134 36 1 1.0113 11.1227 0.0189 37 1 3.2529 10.1238 0.0134 38 1 4.7230 6.1126 -1.9147 39 1 5.1924 2.4771 0.0071 40 1 6.0263 -0.7734 0.0114 41 1 5.9050 0.7624 -0.8807 42 1 5.9031 0.7642 0.8992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002346242.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:17 Heat of formation + Delta-G solvation = 53.801379 kcal Electronic energy + Delta-G solvation = -30168.102133 eV Core-core repulsion = 26079.919607 eV Total energy + Delta-G solvation = -4088.182525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.22335 -40.27104 -38.44447 -38.41859 -36.51732 -34.65668 -33.67177 -32.82558 -30.90178 -29.55677 -29.12393 -28.58566 -27.18942 -27.10912 -25.25071 -23.84552 -22.81867 -21.68108 -21.13632 -20.70934 -19.27458 -18.51863 -17.92337 -16.96317 -16.80392 -16.08935 -15.99840 -15.52845 -15.29801 -15.16867 -15.00063 -14.66997 -14.40085 -14.08827 -13.91433 -13.49297 -13.35858 -13.17138 -12.99306 -12.64102 -12.29652 -12.18431 -11.97129 -11.49464 -11.45764 -11.31370 -11.26763 -11.19532 -10.97442 -10.71096 -10.65991 -10.53888 -10.38593 -10.21884 -9.66332 -8.88785 -8.60085 -8.13166 -8.07239 -7.33428 -7.25731 -6.86272 -4.37979 0.54599 1.15652 1.90632 2.15413 2.86960 3.11293 3.19193 3.30184 3.35544 3.36018 3.38725 3.55453 4.10528 4.35154 4.43884 4.72296 4.78859 4.87580 5.03480 5.06357 5.16314 5.20623 5.25604 5.30771 5.32120 5.43832 5.48356 5.49923 5.59894 5.61876 5.79135 5.84095 5.96030 6.01755 6.10319 6.21976 6.26134 6.48920 6.57328 6.69539 6.92133 6.96744 7.04113 7.14782 7.16641 7.45542 7.63703 7.69948 7.93725 8.19211 8.53721 8.72674 9.03744 10.17736 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.004597 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.438603 B = 6088.945530 C = 8910.475373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.101 3.899 4 C -0.137 4.137 5 C 0.041 3.959 6 N -0.396 5.396 7 C 0.074 3.926 8 C -0.122 4.122 9 C -0.042 4.042 10 C -0.178 4.178 11 C -0.088 4.088 12 C -0.129 4.129 13 C 0.143 3.857 14 N -0.294 5.294 15 C -0.433 4.433 16 H 0.105 0.895 17 C 0.031 3.969 18 N -0.791 5.791 19 Si 1.083 2.917 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.278 1.278 23 C 0.262 3.738 24 N -0.424 5.424 25 C 0.144 3.856 26 C -0.166 4.166 27 C 0.137 3.863 28 O -0.307 6.307 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.280 0.720 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -5.277 2.446 8.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.053 3.947 4 C -0.157 4.157 5 C -0.094 4.094 6 N -0.110 5.110 7 C -0.078 4.078 8 C -0.128 4.128 9 C -0.062 4.062 10 C -0.198 4.198 11 C -0.108 4.108 12 C -0.150 4.150 13 C 0.032 3.968 14 N 0.035 4.965 15 C -0.559 4.559 16 H 0.122 0.878 17 C -0.186 4.186 18 N -0.415 5.415 19 Si 0.907 3.093 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.204 1.204 23 C 0.018 3.982 24 N -0.145 5.145 25 C 0.005 3.995 26 C -0.187 4.187 27 C 0.089 3.911 28 O -0.219 6.219 29 C -0.072 4.072 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.091 0.909 39 H 0.166 0.834 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.658 -6.227 2.152 7.536 hybrid contribution -1.476 0.946 0.150 1.760 sum -5.135 -5.281 2.301 7.717 Atomic orbital electron populations 1.23051 0.78863 1.03585 1.01493 1.86121 1.20801 1.25941 1.89187 1.17638 0.88713 0.84899 1.03416 1.20272 0.99677 0.89058 1.06720 1.19792 0.90521 0.91822 1.07239 1.67652 1.38051 0.96352 1.08927 1.20207 0.90791 0.91674 1.05116 1.18296 0.93471 0.88862 1.12152 1.20430 0.94934 0.94414 0.96388 1.20704 0.98124 0.92949 1.08034 1.20757 0.91563 0.99105 0.99389 1.20074 0.97843 0.90904 1.06205 1.18390 0.85202 0.92217 1.00942 1.40064 1.05055 1.00187 1.51201 1.20595 0.81454 1.11832 1.42028 0.87779 1.26629 1.06187 0.93051 0.92771 1.70598 1.23573 1.30278 1.17075 0.83312 0.72395 0.76825 0.76808 1.19803 1.20575 1.20390 1.19370 0.89438 0.86777 1.02631 1.67783 1.36725 0.95048 1.14913 1.19947 0.89952 0.91510 0.98110 1.20379 1.00502 0.88769 1.09045 1.17769 0.88133 0.85521 0.99677 1.86110 1.19451 1.27779 1.88578 1.23114 0.78376 1.03679 1.02022 0.92638 0.88426 0.92644 0.83916 0.86230 0.86395 0.86147 0.85922 0.90859 0.83429 0.88314 0.92194 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.79 101.05 0.99 1.25 16 2 O -0.31 -4.64 10.21 -35.13 -0.36 -5.00 16 3 C 0.10 1.74 6.66 -39.49 -0.26 1.48 16 4 C -0.14 -2.43 8.96 -39.38 -0.35 -2.78 16 5 C 0.04 0.89 6.73 -82.99 -0.56 0.33 16 6 N -0.40 -9.04 10.51 -6.14 -0.06 -9.10 16 7 C 0.07 1.79 7.45 -82.59 -0.62 1.18 16 8 C -0.12 -2.70 6.34 -104.89 -0.67 -3.36 16 9 C -0.04 -0.76 10.09 -39.33 -0.40 -1.16 16 10 C -0.18 -2.77 10.04 -39.55 -0.40 -3.17 16 11 C -0.09 -1.39 10.01 -39.56 -0.40 -1.78 16 12 C -0.13 -2.47 9.88 -39.36 -0.39 -2.86 16 13 C 0.14 3.28 6.71 -83.71 -0.56 2.71 16 14 N -0.29 -7.59 2.74 -58.57 -0.16 -7.75 16 15 C -0.43 -11.21 9.65 -14.97 -0.14 -11.36 16 16 H 0.10 2.54 7.94 -52.48 -0.42 2.12 16 17 C 0.03 0.80 4.82 -17.48 -0.08 0.72 16 18 N -0.79 -21.84 12.05 55.49 0.67 -21.17 16 19 Si 1.08 22.33 29.99 -169.99 -5.10 17.24 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 C 0.26 6.88 6.23 -154.86 -0.97 5.91 16 24 N -0.42 -11.01 8.23 -8.59 -0.07 -11.08 16 25 C 0.14 3.31 6.73 -82.97 -0.56 2.76 16 26 C -0.17 -3.25 8.96 -39.38 -0.35 -3.60 16 27 C 0.14 2.44 6.66 -39.48 -0.26 2.18 16 28 O -0.31 -4.85 10.21 -35.03 -0.36 -5.21 16 29 C 0.02 0.28 9.79 101.05 0.99 1.27 16 30 H 0.06 0.54 7.61 -51.93 -0.40 0.15 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.54 7.62 -51.93 -0.40 0.14 16 33 H 0.14 2.15 6.15 -52.48 -0.32 1.83 16 34 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 38 H 0.28 8.18 6.89 -40.82 -0.28 7.90 16 39 H 0.15 2.73 6.14 -52.49 -0.32 2.41 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.72 7.61 -51.93 -0.40 0.32 16 42 H 0.06 0.67 7.61 -51.93 -0.40 0.27 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -31.80 356.87 -9.31 -41.11 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.26 Total: 5.88 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.99 Total: -10.29 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.37 Total: -49.10 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.72 Total: -10.21 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.10 Total: 17.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.80 -9.31 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002346242.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.907 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds