Wall clock time and date at job start Tue Mar 31 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38571 * 119.97207 * 2 1 4 4 N 1.33395 * 133.64108 * 359.97438 * 3 2 1 5 5 C 1.31760 * 109.96146 * 179.97438 * 4 3 2 6 6 N 1.37599 * 125.30321 * 180.02562 * 5 4 3 7 7 C 1.47015 * 110.99929 * 36.21344 * 6 5 4 8 8 C 1.53092 * 109.29724 * 177.63123 * 7 6 5 9 9 O 1.43016 * 109.25788 * 56.82494 * 8 7 6 10 10 C 1.43015 * 113.74152 * 301.33059 * 9 8 7 11 11 C 1.47020 * 111.03598 * 272.55811 * 6 5 4 12 12 N 1.35928 * 109.39675 * 0.26767 * 5 4 3 13 13 C 1.46502 * 126.63427 * 179.73346 * 12 5 4 14 14 C 1.50702 * 109.47223 * 92.95033 * 13 12 5 15 15 H 1.08001 * 119.99791 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99931 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99776 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00080 * 359.97438 * 16 14 13 19 19 H 1.48512 * 109.46820 * 90.00704 * 18 16 14 20 20 H 1.48502 * 109.47039 * 210.00154 * 18 16 14 21 21 H 1.48497 * 109.47594 * 330.00596 * 18 16 14 22 22 C 1.38848 * 106.73415 * 359.57956 * 12 5 4 23 23 C 1.40600 * 134.42546 * 180.09488 * 22 12 5 24 24 O 1.21874 * 120.34894 * 0.36065 * 23 22 12 25 25 N 1.34910 * 119.30613 * 180.34231 * 23 22 12 26 26 C 1.46498 * 119.50555 * 179.97438 * 25 23 22 27 27 C 1.34422 * 120.99516 * 359.97438 * 25 23 22 28 28 O 1.21599 * 119.19376 * 180.02562 * 27 25 23 29 29 H 1.09004 * 109.46854 * 90.00564 * 1 2 3 30 30 H 1.09000 * 109.47089 * 209.99575 * 1 2 3 31 31 H 1.08990 * 109.47391 * 330.00448 * 1 2 3 32 32 H 1.09004 * 109.50651 * 57.67123 * 7 6 5 33 33 H 1.09007 * 109.50455 * 297.58803 * 7 6 5 34 34 H 1.09001 * 109.51200 * 176.75960 * 8 7 6 35 35 H 1.09004 * 109.50707 * 296.84836 * 8 7 6 36 36 H 1.09002 * 109.50893 * 178.60490 * 10 9 8 37 37 H 1.08999 * 109.50704 * 298.69803 * 10 9 8 38 38 H 1.09000 * 109.47171 * 62.41356 * 11 6 5 39 39 H 1.08997 * 109.53852 * 302.32314 * 11 6 5 40 40 H 1.09001 * 109.46952 * 212.95044 * 13 12 5 41 41 H 1.09005 * 109.47310 * 332.95016 * 13 12 5 42 42 H 0.96997 * 119.99737 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.46920 * 90.00016 * 26 25 23 44 44 H 1.08995 * 109.47355 * 209.99919 * 26 25 23 45 45 H 1.09000 * 109.46952 * 329.99844 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1572 1.2004 0.0000 4 7 1.7809 2.4802 -0.0004 5 6 2.8421 3.2611 0.0004 6 7 2.8170 4.6369 0.0007 7 6 1.6998 5.1432 0.8111 8 6 1.7435 6.6733 0.8331 9 8 1.7055 7.1657 -0.5091 10 6 2.7802 6.6938 -1.3262 11 6 2.7469 5.1637 -1.3700 12 7 3.9656 2.4960 -0.0046 13 6 5.3499 2.9757 -0.0111 14 6 5.8550 3.0713 1.4056 15 1 5.2093 2.8021 2.2284 16 6 7.1411 3.5034 1.6512 17 7 7.5817 3.5873 2.8875 18 14 8.2576 3.9696 0.2281 19 1 8.0956 5.4143 -0.0754 20 1 9.6699 3.6967 0.5970 21 1 7.8949 3.1687 -0.9687 22 6 3.5477 1.1719 0.0011 23 6 4.2089 -0.0689 0.0017 24 8 5.4267 -0.1176 0.0030 25 7 3.4813 -1.2049 0.0012 26 6 4.1658 -2.5001 0.0013 27 6 2.1377 -1.1663 0.0007 28 8 1.5143 -2.2104 0.0008 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 1.7861 4.7619 1.8286 33 1 0.7562 4.8122 0.3772 34 1 0.8841 7.0542 1.3849 35 1 2.6625 7.0043 1.3169 36 1 2.6706 7.0893 -2.3360 37 1 3.7297 7.0259 -0.9062 38 1 1.8204 4.8332 -1.8394 39 1 3.5973 4.7976 -1.9453 40 1 5.9730 2.2797 -0.5728 41 1 5.3915 3.9594 -0.4788 42 1 8.4865 3.8910 3.0603 43 1 4.3352 -2.8215 1.0290 44 1 3.5490 -3.2371 -0.5128 45 1 5.1226 -2.4054 -0.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002411418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:39 Heat of formation + Delta-G solvation = -14.698663 kcal Electronic energy + Delta-G solvation = -32730.703053 eV Core-core repulsion = 28364.533974 eV Total energy + Delta-G solvation = -4366.169078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 349.158 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.11883 -42.38117 -40.45975 -40.18876 -37.76732 -36.65445 -36.41216 -35.66512 -34.15270 -32.25344 -31.71445 -29.98808 -29.29448 -27.85479 -27.52401 -25.28486 -25.03932 -24.40014 -24.05116 -22.31321 -21.05862 -20.45568 -19.55498 -19.35777 -18.42036 -18.34943 -18.10924 -17.28667 -17.04812 -16.80515 -16.61507 -16.49524 -16.19329 -16.01914 -15.95858 -15.62253 -15.52723 -15.22409 -14.95725 -14.58701 -14.30713 -14.09087 -13.90942 -13.49151 -13.39782 -13.31541 -13.25975 -12.70639 -12.64381 -12.52050 -12.37446 -12.30419 -11.89493 -11.80435 -11.71263 -11.54471 -11.35172 -11.03514 -10.90661 -10.86597 -10.60030 -10.03897 -9.10786 -8.41800 -6.51031 -0.25103 0.60275 0.76086 1.16415 1.29326 1.31214 1.35321 1.42263 1.75829 2.24237 2.26567 2.48878 2.88076 2.91271 2.95023 3.30370 3.76201 3.82948 3.94246 4.03487 4.07635 4.19941 4.25180 4.28878 4.32952 4.35932 4.40468 4.44274 4.47979 4.51558 4.67754 4.69577 4.75882 4.78027 4.80453 4.86566 4.96132 5.01599 5.16887 5.25555 5.41265 5.51622 5.90718 6.00426 6.11979 6.15475 6.29988 6.39118 6.47941 6.76006 7.10755 8.74746 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.008120 B = 0.005600 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.241082 B = 4998.866683 C = 7749.231524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.507 5.507 3 C 0.322 3.678 4 N -0.515 5.515 5 C 0.453 3.547 6 N -0.470 5.470 7 C 0.038 3.962 8 C 0.069 3.931 9 O -0.390 6.390 10 C 0.069 3.931 11 C 0.024 3.976 12 N -0.379 5.379 13 C 0.228 3.772 14 C -0.534 4.534 15 H 0.026 0.974 16 C 0.027 3.973 17 N -0.934 5.934 18 Si 0.940 3.060 19 H -0.244 1.244 20 H -0.279 1.279 21 H -0.252 1.252 22 C -0.173 4.173 23 C 0.585 3.415 24 O -0.531 6.531 25 N -0.554 5.554 26 C 0.082 3.918 27 C 0.709 3.291 28 O -0.551 6.551 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.057 0.943 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.273 0.727 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 1.222 -10.374 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.235 5.235 3 C 0.086 3.914 4 N -0.244 5.244 5 C 0.101 3.899 6 N -0.196 5.196 7 C -0.088 4.088 8 C -0.008 4.008 9 O -0.308 6.308 10 C -0.008 4.008 11 C -0.102 4.102 12 N -0.059 5.059 13 C 0.107 3.893 14 C -0.572 4.572 15 H 0.044 0.956 16 C -0.173 4.173 17 N -0.572 5.572 18 Si 0.761 3.239 19 H -0.168 1.168 20 H -0.204 1.204 21 H -0.176 1.176 22 C -0.291 4.291 23 C 0.380 3.620 24 O -0.408 6.408 25 N -0.298 5.298 26 C -0.058 4.058 27 C 0.412 3.588 28 O -0.426 6.426 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.797 1.235 -10.126 17.158 hybrid contribution 1.416 -0.755 0.116 1.609 sum -12.380 0.480 -10.010 15.928 Atomic orbital electron populations 1.22152 0.72401 1.05526 1.04901 1.43975 1.09787 0.99945 1.69827 1.17892 0.86512 0.87611 0.99373 1.69917 1.28083 0.98213 1.28212 1.20725 0.80162 0.90140 0.98887 1.58727 1.47117 0.98559 1.15183 1.22819 0.90862 0.97403 0.97729 1.22806 1.04119 0.89885 0.83994 1.87968 1.49299 1.70881 1.22640 1.22816 0.90781 0.89717 0.97516 1.23073 1.03111 0.98195 0.85868 1.45279 1.09087 1.03025 1.48471 1.19970 0.74712 0.96516 0.98074 1.20911 0.99251 1.46640 0.90382 0.95607 1.25666 0.98737 0.94120 0.98742 1.70007 1.18523 1.47190 1.21520 0.85839 0.78143 0.80506 0.79372 1.16824 1.20408 1.17561 1.18923 0.94043 0.87107 1.29008 1.15532 0.86682 0.83060 0.76680 1.90927 1.13550 1.87358 1.48965 1.45917 1.06093 1.10022 1.67766 1.22104 0.98599 0.80168 1.04883 1.15462 0.81233 0.83557 0.78529 1.90970 1.65991 1.29296 1.56353 0.89458 0.88264 0.88484 0.90268 0.90910 0.85003 0.92422 0.84768 0.92017 0.91613 0.89284 0.93633 0.91005 0.91822 0.90076 0.86947 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 10.39 127.77 1.33 3.22 16 2 N -0.51 -15.37 3.06 -678.17 -2.08 -17.44 16 3 C 0.32 11.43 7.63 132.90 1.01 12.45 16 4 N -0.51 -17.59 10.44 -194.27 -2.03 -19.61 16 5 C 0.45 16.63 6.56 260.62 1.71 18.34 16 6 N -0.47 -14.69 4.56 -706.09 -3.22 -17.91 16 7 C 0.04 1.00 5.29 86.31 0.46 1.46 16 8 C 0.07 1.46 7.01 72.01 0.50 1.96 16 9 O -0.39 -8.57 10.83 -148.98 -1.61 -10.19 16 10 C 0.07 1.36 7.01 72.02 0.50 1.86 16 11 C 0.02 0.57 5.58 86.31 0.48 1.06 16 12 N -0.38 -16.32 2.82 -521.43 -1.47 -17.78 16 13 C 0.23 10.72 4.66 85.63 0.40 11.12 16 14 C -0.53 -30.52 9.94 25.60 0.25 -30.26 16 15 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 16 C 0.03 1.55 5.47 84.65 0.46 2.02 16 17 N -0.93 -57.09 13.96 21.45 0.30 -56.79 16 18 Si 0.94 41.73 27.47 68.60 1.88 43.62 16 19 H -0.24 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 22 C -0.17 -7.23 6.91 38.81 0.27 -6.96 16 23 C 0.59 24.47 7.42 84.80 0.63 25.10 16 24 O -0.53 -25.57 15.65 -4.91 -0.08 -25.64 16 25 N -0.55 -18.88 2.96 -807.43 -2.39 -21.27 16 26 C 0.08 2.18 10.09 127.77 1.29 3.46 16 27 C 0.71 22.81 8.12 179.21 1.45 24.27 16 28 O -0.55 -17.67 15.27 -4.03 -0.06 -17.73 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.10 1.91 7.38 -2.39 -0.02 1.89 16 31 H 0.10 1.88 8.00 -2.39 -0.02 1.86 16 32 H 0.08 2.25 8.13 -2.38 -0.02 2.23 16 33 H 0.07 1.79 7.90 -2.38 -0.02 1.77 16 34 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.05 2.26 6.48 -2.39 -0.02 2.24 16 41 H 0.07 3.05 7.46 -2.38 -0.02 3.03 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.11 2.47 7.34 -2.39 -0.02 2.45 16 45 H 0.09 2.46 7.40 -2.39 -0.02 2.44 16 Total: -1.00 -75.61 371.42 0.98 -74.63 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.97 Total: 17.05 kcal Atomic # 6 Polarization: 58.32 SS G_CDS: 10.76 Total: 69.07 kcal Atomic # 7 Polarization: -139.93 SS G_CDS: -10.88 Total: -150.81 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -1.75 Total: -53.56 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.62 kcal Total: -75.61 0.98 -74.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002411418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.932 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds