Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35823 * 116.99681 * 2 1 4 4 C 1.38887 * 119.92713 * 179.97438 * 3 2 1 5 5 C 1.37842 * 120.07170 * 179.97438 * 4 3 2 6 6 C 1.39472 * 119.93014 * 359.97438 * 5 4 3 7 7 C 1.48198 * 120.07452 * 180.02562 * 6 5 4 8 8 C 1.40318 * 118.85786 * 180.02562 * 7 6 5 9 9 C 1.38848 * 119.38610 * 180.02562 * 8 7 6 10 10 C 1.47683 * 121.34536 * 179.97438 * 9 8 7 11 11 O 1.21512 * 120.00030 * 174.34502 * 10 9 8 12 12 O 1.34716 * 119.99572 * 354.34112 * 10 9 8 13 13 C 1.34777 * 116.99753 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00428 * 0.02562 * 13 12 10 15 15 C 1.38906 * 120.00376 * 180.02562 * 13 12 10 16 16 N 1.31347 * 120.00327 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99616 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47522 * 89.99698 * 17 15 13 19 19 H 1.48499 * 109.46695 * 210.00012 * 17 15 13 20 20 H 1.48507 * 109.46702 * 329.99591 * 17 15 13 21 21 C 1.46401 * 117.31322 * 0.02562 * 9 8 7 22 22 C 1.39874 * 121.49487 * 180.02562 * 21 9 8 23 23 C 1.36374 * 119.60517 * 179.97438 * 22 21 9 24 24 C 1.39305 * 120.81230 * 359.97438 * 23 22 21 25 25 C 1.36111 * 121.07912 * 0.02562 * 24 23 22 26 26 C 1.40719 * 119.72337 * 359.97438 * 25 24 23 27 27 N 1.31682 * 118.85115 * 359.97438 * 7 6 5 28 28 C 1.39482 * 119.85951 * 0.27602 * 6 5 4 29 29 C 1.37847 * 119.92504 * 359.42460 * 28 6 5 30 30 H 1.08992 * 109.47613 * 300.00912 * 1 2 3 31 31 H 1.09001 * 109.46429 * 60.00846 * 1 2 3 32 32 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.95996 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.03724 * 180.02562 * 5 4 3 35 35 H 1.07998 * 120.30278 * 359.97438 * 8 7 6 36 36 H 0.97005 * 119.99931 * 179.97438 * 16 15 13 37 37 H 1.07994 * 120.20045 * 0.02562 * 22 21 9 38 38 H 1.07994 * 119.59548 * 180.27172 * 23 22 21 39 39 H 1.07997 * 119.46226 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.13757 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.03473 * 179.72395 * 28 6 5 42 42 H 1.07996 * 119.96679 * 180.29723 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 3.4327 1.2812 0.0005 5 6 4.0615 2.5079 0.0000 6 6 3.3033 3.6785 -0.0016 7 6 3.9761 4.9990 -0.0028 8 6 3.1885 6.1603 -0.0038 9 6 3.8073 7.4032 -0.0055 10 6 3.0207 8.6531 -0.0072 11 8 3.5833 9.7253 0.0951 12 8 1.6793 8.6045 -0.1223 13 6 1.0217 9.7810 -0.1164 14 1 1.5709 10.7062 -0.0228 15 6 -0.3624 9.8036 -0.2309 16 7 -1.0033 10.9500 -0.2247 17 14 -1.3125 8.2033 -0.3922 18 1 -1.6806 7.7078 0.9584 19 1 -2.5451 8.4374 -1.1865 20 1 -0.4669 7.1925 -1.0768 21 6 5.2712 7.4248 -0.0065 22 6 5.9843 8.6281 -0.0077 23 6 7.3478 8.6033 -0.0081 24 6 8.0394 7.3940 -0.0069 25 6 7.3763 6.2054 -0.0058 26 6 5.9692 6.1914 -0.0053 27 7 5.2922 5.0416 -0.0017 28 6 1.9105 3.6039 0.0031 29 6 1.2878 2.3741 -0.0026 30 1 -0.3634 0.5139 0.8898 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 4.0192 0.3743 0.0014 34 1 5.1402 2.5624 0.0000 35 1 2.1109 6.0879 -0.0042 36 1 -1.9699 10.9658 -0.3049 37 1 5.4583 9.5713 -0.0073 38 1 7.8982 9.5324 -0.0045 39 1 9.1194 7.3998 -0.0078 40 1 7.9279 5.2768 -0.0045 41 1 1.3207 4.5085 0.0064 42 1 0.2094 2.3155 -0.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002630765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -23.033408 kcal Electronic energy + Delta-G solvation = -28963.585439 eV Core-core repulsion = 24839.778357 eV Total energy + Delta-G solvation = -4123.807083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.115 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.79464 -40.15234 -39.12973 -38.01697 -36.48809 -35.67025 -33.11036 -32.56437 -31.82261 -31.19365 -29.99818 -28.96961 -27.51886 -26.21513 -24.43236 -23.93365 -22.54510 -22.24073 -21.70859 -20.08767 -18.42160 -18.28549 -18.05685 -17.41388 -16.83455 -16.06817 -15.99265 -15.97964 -15.07761 -15.07066 -15.02413 -14.75447 -14.20861 -14.17790 -14.17005 -13.79382 -13.74591 -13.37709 -12.94729 -12.91101 -12.59199 -12.43662 -12.24536 -12.03394 -11.91925 -11.57102 -11.48031 -11.20506 -11.11136 -10.95020 -10.76637 -10.61294 -10.09564 -9.95477 -9.82713 -9.16511 -9.01577 -8.97232 -8.91862 -8.26913 -7.76590 -6.63578 -4.31046 0.10842 0.73906 1.24177 1.44860 1.88095 2.92648 3.02430 3.05339 3.08395 3.18585 3.54083 3.71812 3.72791 4.02216 4.03528 4.34947 4.51254 4.64715 4.73616 4.85280 4.88558 4.89336 4.91462 4.93225 5.11893 5.16095 5.20420 5.22764 5.35103 5.40135 5.45658 5.58012 5.69804 5.83686 5.89370 6.05886 6.12793 6.19945 6.24074 6.27407 6.43240 6.50114 6.56843 6.65815 6.75955 6.99716 7.15346 7.51554 7.77993 7.98290 8.40248 8.72977 9.41304 10.43032 Molecular weight = 349.11amu Principal moments of inertia in cm(-1) A = 0.006594 B = 0.004493 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4245.340404 B = 6230.048019 C =10453.100531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.136 3.864 4 C -0.160 4.160 5 C -0.036 4.036 6 C -0.086 4.086 7 C 0.206 3.794 8 C -0.133 4.133 9 C -0.021 4.021 10 C 0.438 3.562 11 O -0.528 6.528 12 O -0.232 6.232 13 C -0.368 4.368 14 H 0.116 0.884 15 C 0.068 3.932 16 N -0.854 5.854 17 Si 0.902 3.098 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.256 1.256 21 C -0.075 4.075 22 C -0.088 4.088 23 C -0.129 4.129 24 C -0.100 4.100 25 C -0.104 4.104 26 C 0.133 3.867 27 N -0.472 5.472 28 C -0.055 4.055 29 C -0.211 4.211 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.285 0.715 37 H 0.167 0.833 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -18.596 0.187 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.231 6.231 3 C 0.091 3.909 4 C -0.178 4.178 5 C -0.055 4.055 6 C -0.087 4.087 7 C 0.055 3.945 8 C -0.154 4.154 9 C -0.030 4.030 10 C 0.287 3.713 11 O -0.425 6.425 12 O -0.139 6.139 13 C -0.443 4.443 14 H 0.133 0.867 15 C -0.139 4.139 16 N -0.491 5.491 17 Si 0.726 3.274 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.180 1.180 21 C -0.077 4.077 22 C -0.106 4.106 23 C -0.147 4.147 24 C -0.120 4.120 25 C -0.122 4.122 26 C 0.012 3.988 27 N -0.181 5.181 28 C -0.074 4.074 29 C -0.229 4.229 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.184 0.816 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.280 -19.077 0.199 20.798 hybrid contribution -1.403 0.478 -0.062 1.484 sum 6.877 -18.599 0.137 19.830 Atomic orbital electron populations 1.23090 0.78237 1.03948 1.01697 1.86045 1.21548 1.27059 1.88415 1.19216 0.92435 0.84077 0.95219 1.20391 0.91156 0.98678 1.07606 1.21128 1.00760 0.89953 0.93662 1.18436 0.92527 0.91072 1.06711 1.19587 0.88740 0.91960 0.94207 1.22459 1.01978 0.91213 0.99740 1.20651 0.91776 0.92164 0.98364 1.20047 0.82023 0.87690 0.81550 1.90523 1.70426 1.30889 1.50665 1.83488 1.18483 1.37110 1.74821 1.20828 0.90231 0.83487 1.49787 0.86669 1.24629 0.95410 0.98573 0.95274 1.69548 1.09891 1.25208 1.44454 0.86257 0.79260 0.82632 0.79253 1.19355 1.20276 1.18010 1.19602 0.91290 0.94942 1.01849 1.21962 0.94323 0.99544 0.94742 1.21045 0.94443 0.98093 1.01158 1.20906 1.00097 0.92244 0.98726 1.20669 0.91087 0.98759 1.01713 1.18625 0.94030 0.87005 0.99099 1.67420 1.08314 1.28870 1.13533 1.21184 0.93447 0.97853 0.94957 1.21147 1.00261 0.91899 1.09633 0.92422 0.92416 0.88250 0.84905 0.83883 0.83221 0.90456 0.81579 0.85577 0.85591 0.84888 0.84714 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.31 10.49 -19.18 -0.20 -3.51 16 3 C 0.14 1.56 6.69 -39.10 -0.26 1.30 16 4 C -0.16 -1.79 9.97 -39.49 -0.39 -2.19 16 5 C -0.04 -0.44 9.55 -39.27 -0.37 -0.82 16 6 C -0.09 -1.20 5.88 -104.88 -0.62 -1.82 16 7 C 0.21 3.33 6.73 -83.06 -0.56 2.78 16 8 C -0.13 -2.36 9.03 -38.57 -0.35 -2.70 16 9 C -0.02 -0.41 6.08 -102.53 -0.62 -1.04 16 10 C 0.44 10.41 7.83 34.59 0.27 10.68 16 11 O -0.53 -13.44 12.95 -19.28 -0.25 -13.69 16 12 O -0.23 -5.89 7.95 -21.38 -0.17 -6.06 16 13 C -0.37 -10.38 10.11 30.98 0.31 -10.07 16 14 H 0.12 3.56 7.09 -52.48 -0.37 3.19 16 15 C 0.07 1.83 5.50 -17.51 -0.10 1.73 16 16 N -0.85 -23.80 13.95 55.49 0.77 -23.03 16 17 Si 0.90 19.83 28.62 -169.99 -4.87 14.96 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 21 C -0.07 -1.37 5.90 -104.67 -0.62 -1.99 16 22 C -0.09 -1.52 9.31 -39.64 -0.37 -1.89 16 23 C -0.13 -1.76 9.97 -39.86 -0.40 -2.16 16 24 C -0.10 -1.20 9.94 -39.95 -0.40 -1.60 16 25 C -0.10 -1.39 9.99 -39.41 -0.39 -1.78 16 26 C 0.13 2.20 6.62 -84.91 -0.56 1.64 16 27 N -0.47 -7.66 9.22 -7.64 -0.07 -7.74 16 28 C -0.06 -0.71 9.39 -39.26 -0.37 -1.08 16 29 C -0.21 -2.38 9.02 -39.48 -0.36 -2.74 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.66 7.49 -52.48 -0.39 1.26 16 35 H 0.15 2.49 5.75 -52.49 -0.30 2.19 16 36 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.17 3.22 5.16 -52.49 -0.27 2.94 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.14 1.68 6.09 -52.49 -0.32 1.36 16 42 H 0.13 1.20 6.28 -52.49 -0.33 0.87 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -31.37 363.65 -8.49 -39.86 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.03 Total: 6.30 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -5.16 Total: -12.58 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.70 Total: -30.76 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.62 Total: -23.26 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.87 Total: 14.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.37 -8.49 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002630765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.828 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds