Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47040 * 269.99881 * 3 2 1 5 5 H 1.48499 * 109.46995 * 29.99920 * 3 2 1 6 6 H 1.48503 * 109.46979 * 150.00101 * 3 2 1 7 7 C 1.37881 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.36036 * 126.35074 * 269.95691 * 10 9 7 12 12 C 1.50700 * 124.94888 * 0.02562 * 11 10 9 13 13 C 1.50707 * 109.47095 * 90.00057 * 12 11 10 14 14 O 1.21281 * 119.99648 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00128 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99931 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.46898 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.99946 * 269.72484 * 17 16 15 19 19 C 1.38232 * 119.99566 * 179.76668 * 18 17 16 20 20 C 1.38231 * 120.00442 * 0.51221 * 19 18 17 21 21 C 1.38238 * 119.99577 * 359.74146 * 20 19 18 22 22 C 1.38231 * 119.99787 * 90.00368 * 17 16 15 23 23 N 1.30106 * 110.10195 * 180.02562 * 11 10 9 24 24 C 1.35787 * 109.64359 * 359.97438 * 23 11 10 25 25 C 1.39734 * 133.60143 * 179.97438 * 24 23 11 26 26 C 1.36605 * 119.88806 * 180.02562 * 25 24 23 27 27 C 1.38776 * 120.66622 * 359.97438 * 26 25 24 28 28 C 1.37851 * 120.45485 * 0.03810 * 27 26 25 29 29 C 1.38058 * 126.34607 * 89.99869 * 10 9 7 30 30 H 0.96997 * 119.99635 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.47232 * 60.00468 * 9 7 2 32 32 H 1.08996 * 109.47183 * 299.99700 * 9 7 2 33 33 H 1.08993 * 109.47363 * 209.99975 * 12 11 10 34 34 H 1.09003 * 109.47256 * 330.00646 * 12 11 10 35 35 H 0.97003 * 120.00160 * 0.02562 * 15 13 12 36 36 H 1.08993 * 109.47006 * 300.00309 * 16 15 13 37 37 H 1.09003 * 109.46727 * 60.00437 * 16 15 13 38 38 H 1.08002 * 119.99777 * 0.02562 * 18 17 16 39 39 H 1.08002 * 119.99800 * 180.22913 * 19 18 17 40 40 H 1.07999 * 120.00565 * 179.72717 * 20 19 18 41 41 H 1.08006 * 119.99624 * 179.97438 * 21 20 19 42 42 H 1.07994 * 120.00412 * 359.97438 * 22 17 16 43 43 H 1.08009 * 120.05649 * 0.29744 * 25 24 23 44 44 H 1.08001 * 119.66343 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.77372 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.15788 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.7263 -4.2251 -1.0989 12 6 2.4119 -3.8570 -2.5260 13 6 3.3874 -2.8113 -3.0016 14 8 4.2524 -2.4048 -2.2549 15 7 3.2986 -2.3280 -4.2565 16 6 4.2473 -1.3119 -4.7190 17 6 3.9328 -0.9436 -6.1461 18 6 4.5290 -1.6332 -7.1853 19 6 4.2368 -1.2985 -8.4943 20 6 3.3567 -0.2674 -8.7641 21 6 2.7646 0.4257 -7.7249 22 6 3.0527 0.0876 -6.4158 23 7 3.5377 -5.1751 -0.7357 24 6 3.5909 -5.2366 0.6198 25 6 4.2843 -6.0486 1.5211 26 6 4.1260 -5.8632 2.8652 27 6 3.2817 -4.8736 3.3486 28 6 2.5875 -4.0609 2.4781 29 6 2.7346 -4.2356 1.1087 30 1 -0.4849 0.8401 -0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6239 -2.5575 0.8880 33 1 2.4929 -4.7426 -3.1560 34 1 1.3980 -3.4611 -2.5842 35 1 2.6065 -2.6528 -4.8536 36 1 4.1665 -0.4260 -4.0892 37 1 5.2611 -1.7080 -4.6605 38 1 5.2198 -2.4362 -6.9744 39 1 4.6997 -1.8398 -9.3062 40 1 3.1318 -0.0030 -9.7868 41 1 2.0772 1.2317 -7.9357 42 1 2.5901 0.6291 -5.6040 43 1 4.9476 -6.8187 1.1556 44 1 4.6634 -6.4932 3.5586 45 1 3.1677 -4.7394 4.4142 46 1 1.9314 -3.2925 2.8596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002897267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = 54.686006 kcal Electronic energy + Delta-G solvation = -29586.099469 eV Core-core repulsion = 25633.788398 eV Total energy + Delta-G solvation = -3952.311070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.45580 -39.74518 -38.81859 -36.76847 -34.75014 -34.07809 -32.28604 -31.90950 -31.08236 -30.82563 -29.76000 -27.68851 -27.13479 -25.79731 -23.34674 -22.75098 -21.99025 -21.42918 -21.30091 -20.37409 -19.14540 -17.40272 -16.86433 -16.73924 -16.51068 -16.12105 -15.81848 -15.57233 -15.07884 -14.68158 -14.64429 -14.53931 -14.33866 -13.61014 -13.45427 -13.30555 -13.22996 -13.12184 -12.77107 -12.66412 -12.61160 -12.48079 -11.91389 -11.57622 -11.40554 -11.36092 -11.22501 -11.18324 -10.98306 -10.89535 -10.78588 -10.27023 -10.05930 -9.64435 -9.27291 -9.25881 -9.11725 -8.95583 -8.84797 -8.67613 -7.60350 -7.38423 -6.29889 -4.36012 1.06039 1.21197 1.56330 2.19270 3.05431 3.12258 3.18608 3.25070 3.33704 3.53504 3.66563 3.87762 4.28610 4.50325 4.54825 4.60097 4.69268 4.81630 4.94336 5.04224 5.09729 5.22628 5.26408 5.30844 5.46171 5.48244 5.54113 5.59320 5.66591 5.70954 5.87751 5.90416 6.02372 6.05835 6.08852 6.24621 6.28298 6.31476 6.45591 6.50294 6.59253 6.79434 6.84146 6.88360 7.04286 7.19295 7.37635 7.53043 7.67331 7.70866 7.83028 8.01344 8.57903 8.60773 8.76499 9.31763 10.77582 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.003289 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.313150 B = 8510.052191 C =10595.416968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.068 3.932 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.237 3.763 10 N -0.448 5.448 11 C 0.300 3.700 12 C -0.058 4.058 13 C 0.526 3.474 14 O -0.508 6.508 15 N -0.731 5.731 16 C 0.163 3.837 17 C -0.103 4.103 18 C -0.102 4.102 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.099 4.099 23 N -0.507 5.507 24 C 0.042 3.958 25 C -0.074 4.074 26 C -0.138 4.138 27 C -0.123 4.123 28 C -0.092 4.092 29 C 0.057 3.943 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -4.720 -12.413 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.089 0.911 9 C 0.119 3.881 10 N -0.132 5.132 11 C 0.034 3.966 12 C -0.099 4.099 13 C 0.311 3.689 14 O -0.381 6.381 15 N -0.386 5.386 16 C 0.039 3.961 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.143 4.143 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.117 4.117 23 N -0.229 5.229 24 C -0.079 4.079 25 C -0.094 4.094 26 C -0.159 4.159 27 C -0.144 4.144 28 C -0.113 4.113 29 C -0.055 4.055 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.233 0.767 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.110 -4.671 -12.373 13.849 hybrid contribution -0.495 1.600 0.159 1.683 sum 3.615 -3.070 -12.214 13.103 Atomic orbital electron populations 1.69920 1.05973 1.27563 1.49756 1.24885 0.94853 0.99342 0.94459 0.86416 0.79987 0.82324 0.78432 1.20401 1.20978 1.19541 1.21372 0.94146 0.89251 1.52073 0.91121 1.19734 0.86863 0.82043 0.99499 1.45864 1.35945 1.27726 1.03648 1.22236 0.93517 0.91160 0.89700 1.19990 1.00716 0.99506 0.89710 1.20132 0.85319 0.82335 0.81144 1.90774 1.35309 1.58328 1.53657 1.45864 1.35200 1.43290 1.14202 1.20134 0.93316 0.92463 0.90154 1.19959 0.98335 0.97084 0.94925 1.21133 0.99358 0.99205 0.92319 1.21148 0.98663 0.97909 0.96569 1.21200 0.97087 0.96069 0.99131 1.21192 1.00111 1.00062 0.92678 1.21234 0.96769 0.96622 0.97116 1.70244 1.20221 1.21480 1.10906 1.19030 1.00338 0.98268 0.90266 1.19817 0.99266 0.98733 0.91592 1.20441 1.01012 0.99852 0.94597 1.20708 0.98379 0.96596 0.98673 1.20057 1.01435 1.00412 0.89368 1.18894 0.99735 0.97059 0.89835 0.92382 0.93583 0.93440 0.86318 0.86671 0.76722 0.90484 0.90775 0.85794 0.86018 0.86146 0.85912 0.85519 0.86367 0.86348 0.86150 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 8 H 0.07 2.10 7.81 -52.49 -0.41 1.69 16 9 C 0.24 5.82 5.69 -5.19 -0.03 5.79 16 10 N -0.45 -10.32 2.79 -112.44 -0.31 -10.63 16 11 C 0.30 6.38 6.35 -154.83 -0.98 5.40 16 12 C -0.06 -0.96 5.99 -29.03 -0.17 -1.13 16 13 C 0.53 9.50 7.82 -10.98 -0.09 9.41 16 14 O -0.51 -11.76 16.03 5.56 0.09 -11.67 16 15 N -0.73 -10.09 5.55 -61.47 -0.34 -10.43 16 16 C 0.16 2.18 5.80 -5.19 -0.03 2.15 16 17 C -0.10 -1.15 5.25 -104.62 -0.55 -1.70 16 18 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 19 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 22 C -0.10 -1.09 9.70 -39.59 -0.38 -1.48 16 23 N -0.51 -11.16 11.27 -8.24 -0.09 -11.25 16 24 C 0.04 0.90 7.23 -84.70 -0.61 0.29 16 25 C -0.07 -1.34 10.05 -39.61 -0.40 -1.74 16 26 C -0.14 -2.18 9.96 -39.97 -0.40 -2.58 16 27 C -0.12 -2.03 10.03 -39.52 -0.40 -2.43 16 28 C -0.09 -1.83 10.05 -39.50 -0.40 -2.22 16 29 C 0.06 1.29 6.88 -83.98 -0.58 0.71 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 1.11 6.99 -51.93 -0.36 0.75 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.12 1.75 7.01 -51.93 -0.36 1.38 16 35 H 0.40 4.29 8.46 -40.82 -0.35 3.94 16 36 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 46 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -33.95 398.83 -12.05 -46.00 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.11 Total: 7.61 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -7.01 Total: -8.35 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.01 Total: -56.03 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.95 -12.05 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002897267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.688 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds