Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47111 * 2 1 4 4 C 1.53005 * 109.47448 * 239.99997 * 2 1 3 5 5 N 1.46506 * 109.47206 * 119.99792 * 2 1 3 6 6 C 1.34771 * 119.99808 * 60.00590 * 5 2 1 7 7 O 1.21282 * 119.99951 * 359.97438 * 6 5 2 8 8 C 1.50699 * 120.00263 * 179.97438 * 6 5 2 9 9 O 1.45195 * 109.47593 * 179.97438 * 8 6 5 10 10 C 1.34752 * 117.00253 * 179.97438 * 9 8 6 11 11 O 1.21510 * 119.99813 * 0.02562 * 10 9 8 12 12 C 1.47460 * 119.99938 * 180.02562 * 10 9 8 13 13 C 1.39839 * 120.06259 * 180.02562 * 12 10 9 14 14 C 1.37614 * 119.92694 * 180.29959 * 13 12 10 15 15 C 1.39272 * 120.06806 * 359.44512 * 14 13 12 16 16 N 1.39071 * 119.93249 * 180.25894 * 15 14 13 17 17 C 1.34771 * 119.99977 * 213.94198 * 16 15 14 18 18 O 1.21726 * 120.00405 * 5.27935 * 17 16 15 19 19 C 1.46202 * 120.00170 * 185.27935 * 17 16 15 20 20 H 1.07998 * 119.99946 * 359.97438 * 19 17 16 21 21 C 1.40121 * 120.00108 * 179.97438 * 19 17 16 22 22 N 1.30640 * 120.00103 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00046 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46905 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47321 * 119.99761 * 23 21 19 26 26 H 1.48494 * 109.47303 * 240.00054 * 23 21 19 27 27 C 1.39269 * 120.13235 * 0.55252 * 15 14 13 28 28 C 1.37607 * 120.07078 * 359.73074 * 27 15 14 29 29 H 1.08997 * 109.46850 * 299.99855 * 1 2 3 30 30 H 1.08996 * 109.46783 * 59.99940 * 1 2 3 31 31 H 1.09002 * 109.46701 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47399 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46902 * 300.00189 * 3 2 1 34 34 H 1.09004 * 109.47001 * 59.99976 * 3 2 1 35 35 H 1.09002 * 109.46908 * 300.00153 * 4 2 1 36 36 H 1.08997 * 109.46644 * 59.99936 * 4 2 1 37 37 H 1.08993 * 109.47009 * 179.97438 * 4 2 1 38 38 H 0.96996 * 119.99843 * 240.00020 * 5 2 1 39 39 H 1.09004 * 109.47062 * 59.99533 * 8 6 5 40 40 H 1.09002 * 109.46888 * 299.99848 * 8 6 5 41 41 H 1.07993 * 120.04073 * 0.02610 * 13 12 10 42 42 H 1.08001 * 119.96523 * 179.70162 * 14 13 12 43 43 H 0.97001 * 119.99876 * 33.94416 * 16 15 14 44 44 H 0.96998 * 119.99977 * 180.02562 * 22 21 19 45 45 H 1.08003 * 119.96184 * 179.69770 * 27 15 14 46 46 H 1.08004 * 120.03417 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 1.6929 -1.9809 1.4095 7 8 0.9953 -2.5702 0.6113 8 6 2.1957 -2.6915 2.6396 9 8 1.7112 -4.0603 2.6400 10 6 2.0740 -4.8374 3.6793 11 8 2.7757 -4.3835 4.5614 12 6 1.6196 -6.2387 3.7461 13 6 1.9949 -7.0462 4.8243 14 6 1.5743 -8.3552 4.8807 15 6 0.7661 -8.8726 3.8713 16 7 0.3383 -10.1944 3.9339 17 6 0.1847 -10.9074 2.8006 18 8 0.5114 -10.4276 1.7306 19 6 -0.3742 -12.2572 2.8561 20 1 -0.6637 -12.6831 3.8054 21 6 -0.5344 -12.9982 1.6777 22 7 -0.1847 -12.4828 0.5293 23 14 -1.2479 -14.7231 1.7488 24 1 -1.5604 -15.0718 3.1580 25 1 -2.4904 -14.7787 0.9374 26 1 -0.2596 -15.6903 1.2076 27 6 0.3907 -8.0708 2.7963 28 6 0.8129 -6.7627 2.7313 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 2.5760 -0.2192 1.8347 39 1 1.8327 -2.1778 3.5298 40 1 3.2857 -2.6915 2.6392 41 1 2.6178 -6.6443 5.6096 42 1 1.8677 -8.9809 5.7107 43 1 0.1503 -10.6031 4.7933 44 1 -0.2959 -12.9957 -0.2864 45 1 -0.2321 -8.4763 2.0125 46 1 0.5217 -6.1415 1.8971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003282317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = -136.511531 kcal Electronic energy + Delta-G solvation = -29280.923293 eV Core-core repulsion = 24942.605172 eV Total energy + Delta-G solvation = -4338.318121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.75087 -40.06194 -39.11027 -37.17742 -36.76231 -36.03192 -33.65664 -32.68442 -32.56786 -30.57634 -29.83888 -28.36946 -27.77818 -27.55023 -26.47829 -23.67300 -22.31402 -21.74582 -20.94782 -19.96507 -19.76572 -18.12088 -17.79698 -17.34036 -16.72749 -16.70677 -16.18039 -16.02005 -15.58488 -15.15330 -14.60432 -14.46740 -14.39386 -14.04244 -13.89621 -13.79276 -13.28145 -13.17024 -12.97161 -12.86090 -12.68566 -12.61210 -12.46081 -12.40199 -12.02341 -11.95466 -11.88101 -11.49804 -11.38754 -11.34413 -11.17643 -10.84576 -10.81273 -10.67791 -10.43071 -10.37023 -9.82712 -9.49828 -9.44844 -8.99936 -8.60981 -7.88451 -7.30977 -6.43793 -4.91855 1.11927 1.87968 2.15782 2.30407 2.80641 3.02352 3.10483 3.14840 3.18365 3.91655 4.13521 4.20786 4.42573 4.46959 4.50996 4.51614 4.67223 4.78620 4.84190 5.02196 5.12042 5.24043 5.26484 5.36854 5.37226 5.43200 5.46850 5.52796 5.62200 5.63255 5.78094 5.91271 5.99584 6.07292 6.09040 6.20478 6.25709 6.46074 6.67625 6.80369 6.90559 7.12981 7.17455 7.22592 7.59300 7.85176 7.88387 7.92883 8.03582 8.75904 9.05087 10.25617 10.46336 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.001885 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.912713 B =14849.498168 C =16274.178630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.170 3.830 3 C -0.155 4.155 4 C -0.166 4.166 5 N -0.724 5.724 6 C 0.517 3.483 7 O -0.505 6.505 8 C 0.048 3.952 9 O -0.329 6.329 10 C 0.521 3.479 11 O -0.525 6.525 12 C -0.189 4.189 13 C -0.026 4.026 14 C -0.195 4.195 15 C 0.238 3.762 16 N -0.694 5.694 17 C 0.537 3.463 18 O -0.554 6.554 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.085 3.915 22 N -0.755 5.755 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.149 4.149 28 C -0.034 4.034 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.400 0.600 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.397 0.603 44 H 0.273 0.727 45 H 0.147 0.853 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 23.493 3.333 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.085 3.915 3 C -0.212 4.212 4 C -0.224 4.224 5 N -0.379 5.379 6 C 0.302 3.698 7 O -0.378 6.378 8 C -0.029 4.029 9 O -0.244 6.244 10 C 0.369 3.631 11 O -0.416 6.416 12 C -0.192 4.192 13 C -0.045 4.045 14 C -0.217 4.217 15 C 0.136 3.864 16 N -0.335 5.335 17 C 0.345 3.655 18 O -0.435 6.435 19 C -0.571 4.571 20 H 0.093 0.907 21 C -0.137 4.137 22 N -0.383 5.383 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.170 4.170 28 C -0.053 4.053 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.231 0.769 44 H 0.084 0.916 45 H 0.165 0.835 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.714 23.391 1.947 23.763 hybrid contribution 0.087 -0.643 0.882 1.095 sum 3.801 22.747 2.829 23.236 Atomic orbital electron populations 1.22247 0.93990 1.04355 1.01797 1.20374 0.94614 0.91657 0.84819 1.22091 1.01633 0.94339 1.03155 1.22251 1.00983 1.03043 0.96159 1.46011 1.54575 1.11533 1.25785 1.20080 0.80809 0.81957 0.86988 1.90726 1.35847 1.65575 1.45681 1.22592 1.00813 0.81857 0.97672 1.86657 1.69532 1.22065 1.46172 1.21351 0.76711 0.86728 0.78302 1.90786 1.36935 1.74857 1.39000 1.18706 1.09732 0.90081 1.00647 1.20808 0.95822 0.92349 0.95485 1.20821 1.02484 0.96244 1.02121 1.18314 0.89209 0.85363 0.93522 1.44319 1.68187 1.09091 1.11912 1.18486 0.79269 0.86438 0.81347 1.90664 1.53165 1.71696 1.27979 1.20907 1.43222 0.98261 0.94681 0.90750 1.25768 0.93594 0.99597 0.94714 1.69984 1.33422 1.36338 0.98571 0.86193 0.79036 0.81545 0.79365 1.18580 1.19904 1.19941 1.21347 1.03122 0.92237 1.00255 1.21314 0.92874 0.94975 0.96131 0.92676 0.91740 0.90085 0.91867 0.90675 0.91888 0.90060 0.91736 0.92644 0.76550 0.88330 0.88303 0.85197 0.85431 0.76893 0.91582 0.83545 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.40 37.16 0.31 -1.05 16 2 C 0.17 1.23 1.06 -131.81 -0.14 1.09 16 3 C -0.15 -0.68 8.59 37.16 0.32 -0.36 16 4 C -0.17 -1.40 8.40 37.16 0.31 -1.09 16 5 N -0.72 -5.26 5.11 -47.60 -0.24 -5.51 16 6 C 0.52 5.65 7.33 -10.99 -0.08 5.57 16 7 O -0.50 -7.57 12.71 -14.10 -0.18 -7.75 16 8 C 0.05 0.52 5.95 36.01 0.21 0.73 16 9 O -0.33 -4.93 8.99 -47.31 -0.43 -5.35 16 10 C 0.52 8.39 7.89 34.49 0.27 8.66 16 11 O -0.52 -8.75 16.13 -19.27 -0.31 -9.06 16 12 C -0.19 -3.22 5.88 -104.95 -0.62 -3.84 16 13 C -0.03 -0.41 9.58 -39.21 -0.38 -0.79 16 14 C -0.20 -3.24 9.94 -39.42 -0.39 -3.63 16 15 C 0.24 4.76 6.27 -83.81 -0.53 4.23 16 16 N -0.69 -14.76 5.30 -11.19 -0.06 -14.82 16 17 C 0.54 14.32 7.46 -13.07 -0.10 14.23 16 18 O -0.55 -16.74 12.69 5.17 0.07 -16.68 16 19 C -0.54 -14.09 9.54 -35.68 -0.34 -14.43 16 20 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 21 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 22 N -0.76 -21.43 11.82 55.55 0.66 -20.77 16 23 Si 0.91 19.00 29.56 -169.99 -5.02 13.98 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.15 -3.09 8.62 -39.43 -0.34 -3.43 16 28 C -0.03 -0.61 9.60 -39.22 -0.38 -0.99 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.94 6.17 -51.93 -0.32 0.62 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.40 1.67 8.47 -40.82 -0.35 1.32 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.13 1.84 7.64 -52.49 -0.40 1.44 16 42 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.40 7.07 8.79 -40.82 -0.36 6.71 16 44 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 45 H 0.15 3.45 6.41 -52.48 -0.34 3.11 16 46 H 0.13 2.30 7.60 -52.48 -0.40 1.90 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -34.94 392.37 -7.81 -42.75 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.26 Total: 10.27 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.95 Total: 7.04 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.35 Total: -41.10 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.85 Total: -38.85 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.94 -7.81 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003282317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.764 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds