Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99724 * 2 1 4 4 H 1.48505 * 109.46827 * 239.99645 * 3 2 1 5 5 H 1.48497 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46805 * 119.99880 * 3 2 1 7 7 C 1.37878 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00125 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.34788 * 119.99756 * 89.99959 * 10 9 7 12 12 S 1.71199 * 119.99894 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99640 * 180.02562 * 11 10 9 14 14 C 1.34782 * 119.99957 * 180.02562 * 13 11 10 15 15 O 1.21671 * 119.99415 * 0.02562 * 14 13 11 16 16 C 1.46542 * 120.00188 * 179.97438 * 14 13 11 17 17 C 1.36614 * 125.99029 * 179.97438 * 16 14 13 18 18 C 1.40334 * 106.70106 * 179.76145 * 17 16 14 19 19 C 1.35153 * 107.12016 * 0.24520 * 18 17 16 20 20 O 1.33923 * 108.78088 * 359.97438 * 19 18 17 21 21 C 1.40003 * 120.00523 * 270.00395 * 10 9 7 22 22 C 1.38821 * 120.07532 * 270.00200 * 21 10 9 23 23 C 1.38143 * 119.94783 * 179.97438 * 22 21 10 24 24 C 1.38282 * 120.11892 * 0.02562 * 23 22 21 25 25 C 1.38270 * 120.15167 * 359.97072 * 24 23 22 26 26 C 1.38304 * 120.05146 * 359.75017 * 25 24 23 27 27 F 1.35100 * 120.05967 * 180.27521 * 26 25 24 28 28 H 0.96995 * 120.00199 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47218 * 60.00460 * 9 7 2 30 30 H 1.08996 * 109.47326 * 299.99834 * 9 7 2 31 31 H 0.97005 * 120.00772 * 0.02562 * 13 11 10 32 32 H 1.08002 * 126.65255 * 0.03287 * 17 16 14 33 33 H 1.07999 * 126.43800 * 180.21114 * 18 17 16 34 34 H 1.08005 * 125.60694 * 179.97438 * 19 18 17 35 35 H 1.07995 * 120.02310 * 359.94949 * 22 21 10 36 36 H 1.08003 * 119.94365 * 179.97438 * 23 22 21 37 37 H 1.07993 * 119.92391 * 179.97438 * 24 23 22 38 38 H 1.08007 * 119.97399 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6410 -4.1249 1.1679 12 16 2.0842 -3.4746 2.6504 13 7 3.5171 -5.1489 1.1678 14 6 3.9547 -5.6615 2.3351 15 8 3.5582 -5.1999 3.3887 16 6 4.9069 -6.7753 2.3351 17 6 5.4286 -7.3855 3.4405 18 6 6.2851 -8.3959 2.9769 19 6 6.2537 -8.3555 1.6264 20 8 5.4245 -7.3761 1.2435 21 6 2.6581 -4.1448 -1.2119 22 6 1.9711 -5.1898 -1.8144 23 6 2.4221 -5.7125 -3.0110 24 6 3.5571 -5.1969 -3.6095 25 6 4.2448 -4.1560 -3.0133 26 6 3.7959 -3.6239 -1.8183 27 9 4.4646 -2.6031 -1.2385 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.8329 -5.5171 0.3278 32 1 5.2189 -7.1409 4.4713 33 1 6.8614 -9.0773 3.5851 34 1 6.8064 -9.0061 0.9648 35 1 1.0850 -5.5940 -1.3479 36 1 1.8878 -6.5258 -3.4795 37 1 3.9071 -5.6082 -4.5447 38 1 5.1308 -3.7553 -3.4835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003292840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = 20.573982 kcal Electronic energy + Delta-G solvation = -28113.641077 eV Core-core repulsion = 23965.594167 eV Total energy + Delta-G solvation = -4148.046910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.073 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.68202 -42.89177 -40.61997 -39.29585 -37.29688 -34.77823 -33.26446 -32.65172 -30.87048 -30.43708 -30.01638 -27.63159 -25.22242 -23.69460 -22.94503 -22.74085 -21.97158 -21.20625 -20.69650 -19.19839 -18.15045 -17.34068 -16.95353 -16.82562 -16.55112 -16.01518 -15.73796 -15.64591 -15.08544 -14.97426 -14.80281 -14.42499 -14.16175 -13.79862 -13.42736 -13.37907 -13.21030 -12.90705 -12.77451 -12.34521 -12.12710 -11.96033 -11.60673 -11.33925 -10.99859 -10.82866 -10.65234 -10.33198 -10.28710 -10.18761 -9.88290 -9.18560 -8.99063 -8.79903 -8.76108 -8.43312 -7.15954 -6.06052 -5.84291 -4.09091 0.78091 0.89813 1.05204 1.62785 2.18793 2.27422 2.56003 3.07999 3.17865 3.35085 3.36282 3.39374 3.43193 3.49758 4.22569 4.41835 4.46458 4.64471 4.67522 4.76924 4.78645 5.05863 5.16563 5.28824 5.35951 5.40033 5.53662 5.65209 5.79859 5.91079 5.94139 6.08458 6.09623 6.18392 6.39652 6.54071 6.73298 6.90570 7.22660 7.37028 7.72405 7.89390 7.95700 8.08786 8.90420 9.53989 11.02978 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.004458 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.433023 B = 6279.332871 C = 7758.047543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.240 3.760 10 N -0.491 5.491 11 C 0.518 3.482 12 S -0.501 6.501 13 N -0.645 5.645 14 C 0.579 3.421 15 O -0.390 6.390 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.224 4.224 19 C -0.009 4.009 20 O -0.168 6.168 21 C 0.069 3.931 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.083 4.083 25 C -0.154 4.154 26 C 0.124 3.876 27 F -0.116 7.116 28 H 0.265 0.735 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.405 0.595 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.209 0.791 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.583 -19.934 -7.019 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.083 0.917 9 C 0.123 3.877 10 N -0.196 5.196 11 C 0.169 3.831 12 S -0.365 6.365 13 N -0.290 5.290 14 C 0.359 3.641 15 O -0.256 6.256 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.243 4.243 19 C -0.079 4.079 20 O -0.063 6.063 21 C -0.026 4.026 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.102 4.102 25 C -0.174 4.174 26 C 0.102 3.898 27 F -0.094 7.094 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.243 0.757 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.226 0.774 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.626 -18.820 -5.617 22.331 hybrid contribution 1.243 0.525 -1.241 1.833 sum 11.869 -18.295 -6.858 22.861 Atomic orbital electron populations 1.69907 1.05918 1.27301 1.49857 1.24799 0.94819 0.98972 0.94711 0.86535 0.79550 0.82540 0.78755 1.20377 1.21125 1.19875 1.21175 0.93601 0.89474 1.51850 0.91744 1.20162 0.86551 0.80275 1.00728 1.45613 1.42009 1.32899 0.99091 1.22622 0.83635 0.83049 0.93751 1.93143 1.64547 1.66201 1.12579 1.43029 1.42169 1.32434 1.11328 1.16746 0.81274 0.81847 0.84221 1.91439 1.49998 1.53404 1.30772 1.22487 1.04254 1.00767 0.85520 1.21990 0.96637 0.95343 0.99748 1.21862 1.04766 1.02883 0.94788 1.24412 0.95194 0.92006 0.96319 1.84086 1.48043 1.39419 1.34790 1.18112 0.95572 0.97842 0.91087 1.21371 0.99059 0.94475 0.95430 1.21088 0.97185 1.01061 0.95252 1.21081 0.94608 0.95017 0.99459 1.21157 1.02520 0.98997 0.94703 1.18089 0.91708 0.87048 0.92908 1.91597 1.78472 1.55813 1.83517 0.92547 0.94038 0.89864 0.75704 0.81890 0.82522 0.77409 0.84466 0.84735 0.84681 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.56 9.33 -34.44 -0.32 -14.88 16 8 H 0.06 1.84 6.40 -52.49 -0.34 1.50 16 9 C 0.24 6.06 4.92 -5.20 -0.03 6.04 16 10 N -0.49 -10.25 2.32 -116.57 -0.27 -10.53 16 11 C 0.52 11.01 7.62 -86.91 -0.66 10.35 16 12 S -0.50 -12.89 25.01 -107.50 -2.69 -15.58 16 13 N -0.64 -11.04 5.13 -14.14 -0.07 -11.11 16 14 C 0.58 9.92 7.71 -12.91 -0.10 9.82 16 15 O -0.39 -8.08 13.61 5.21 0.07 -8.01 16 16 C -0.08 -1.03 7.13 -36.82 -0.26 -1.29 16 17 C -0.12 -1.33 10.62 -39.38 -0.42 -1.75 16 18 C -0.22 -1.88 10.87 -39.89 -0.43 -2.31 16 19 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 20 O -0.17 -1.84 10.40 4.99 0.05 -1.79 16 21 C 0.07 1.15 3.58 -83.60 -0.30 0.85 16 22 C -0.08 -1.08 9.97 -39.40 -0.39 -1.47 16 23 C -0.13 -1.22 10.04 -39.60 -0.40 -1.62 16 24 C -0.08 -0.76 10.04 -39.55 -0.40 -1.16 16 25 C -0.15 -1.81 10.02 -39.55 -0.40 -2.20 16 26 C 0.12 2.01 7.31 -39.25 -0.29 1.72 16 27 F -0.12 -2.27 15.65 2.25 0.04 -2.24 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.04 1.07 8.05 -51.93 -0.42 0.65 16 30 H 0.08 2.34 6.58 -51.93 -0.34 2.00 16 31 H 0.41 5.79 7.05 -40.82 -0.29 5.50 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -35.98 355.75 -9.41 -45.39 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.48 Total: 2.32 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -4.13 Total: 4.27 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.39 Total: -47.05 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.12 Total: -9.80 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: -12.89 SS G_CDS: -2.69 Total: -15.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.98 -9.41 -45.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003292840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.961 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds