Wall clock time and date at job start Tue Mar 31 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86799 * 119.99813 * 2 1 4 4 H 1.48504 * 109.46715 * 239.99909 * 3 2 1 5 5 H 1.48497 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47243 * 119.99964 * 3 2 1 7 7 C 1.38750 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99448 * 179.97438 * 7 2 1 9 9 O 1.34916 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99864 * 179.97438 * 9 7 2 11 11 O 1.21206 * 120.00137 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99815 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47321 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47321 * 180.02562 * 13 12 10 15 15 N 1.30854 * 118.12282 * 359.97438 * 14 13 12 16 16 C 1.35171 * 118.03610 * 179.97438 * 15 14 13 17 17 S 1.74597 * 128.88300 * 180.02562 * 16 15 14 18 18 C 1.75819 * 92.34382 * 180.02562 * 17 16 15 19 19 C 1.33958 * 111.37644 * 0.03619 * 18 17 16 20 20 C 1.39625 * 121.42849 * 0.05429 * 16 15 14 21 21 C 1.43263 * 119.22656 * 359.97438 * 20 16 15 22 22 O 1.21884 * 122.25902 * 179.97438 * 21 20 16 23 23 N 1.35463 * 118.12519 * 180.02562 * 14 13 12 24 24 H 0.97002 * 118.96185 * 0.02562 * 23 14 13 25 25 C 1.52338 * 123.12049 * 180.02562 * 19 18 17 26 26 C 1.52928 * 108.95471 * 342.68264 * 25 19 18 27 27 C 1.53176 * 109.10370 * 50.95145 * 26 25 19 28 28 C 1.51781 * 124.25184 * 180.02562 * 18 17 16 29 29 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47432 * 59.99662 * 12 10 9 31 31 H 1.09002 * 109.47259 * 300.00127 * 12 10 9 32 32 H 1.09007 * 109.46974 * 59.99775 * 13 12 10 33 33 H 1.09002 * 109.47072 * 300.00258 * 13 12 10 34 34 H 1.09001 * 109.55141 * 222.84557 * 25 19 18 35 35 H 1.08998 * 109.65880 * 102.58466 * 25 19 18 36 36 H 1.09003 * 109.52871 * 291.06990 * 26 25 19 37 37 H 1.08996 * 109.59282 * 170.88157 * 26 25 19 38 38 H 1.08993 * 109.57216 * 169.69668 * 27 26 25 39 39 H 1.09004 * 109.66862 * 49.39552 * 27 26 25 40 40 H 1.09000 * 109.57012 * 283.19650 * 28 18 17 41 41 H 1.09002 * 109.56948 * 43.55325 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0001 9 8 1.3335 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4330 0.0001 12 6 1.3810 -4.8393 0.0011 13 6 2.4347 -5.9486 0.0004 14 6 1.7505 -7.2913 0.0003 15 7 0.4422 -7.3170 0.0014 16 6 -0.1696 -8.5223 0.0008 17 16 -1.8776 -8.8845 0.0013 18 6 -1.5836 -10.6179 0.0007 19 6 -0.2721 -10.8907 0.0010 20 6 0.5633 -9.7108 0.0002 21 6 1.9946 -9.6500 -0.0003 22 8 2.6883 -10.6521 -0.0004 23 7 2.5251 -8.4027 0.0002 24 1 3.4900 -8.3027 0.0005 25 6 0.2831 -12.3093 0.0000 26 6 -0.8219 -13.2754 0.4294 27 6 -2.0730 -13.0132 -0.4147 28 6 -2.6776 -11.6699 0.0003 29 1 -0.4851 0.8400 0.0004 30 1 0.7578 -4.9300 -0.8886 31 1 0.7585 -4.9295 0.8914 32 1 3.0582 -5.8580 0.8899 33 1 3.0568 -5.8581 -0.8901 34 1 1.1171 -12.3751 0.6987 35 1 0.6253 -12.5685 -1.0019 36 1 -1.0537 -13.1189 1.4829 37 1 -0.4888 -14.3022 0.2781 38 1 -2.7996 -13.8081 -0.2472 39 1 -1.8033 -12.9816 -1.4704 40 1 -3.1034 -11.7544 1.0001 41 1 -3.4567 -11.3862 -0.7073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003336618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:55 Heat of formation + Delta-G solvation = -88.255730 kcal Electronic energy + Delta-G solvation = -26905.325667 eV Core-core repulsion = 22876.019851 eV Total energy + Delta-G solvation = -4029.305816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74541 -39.13058 -38.76063 -37.99028 -35.59998 -35.09593 -33.54928 -32.45575 -32.13633 -31.07261 -28.78355 -26.44902 -25.48005 -24.91265 -23.32736 -22.69325 -21.96637 -19.73894 -19.33931 -18.84398 -17.93489 -17.75432 -17.35713 -16.70128 -16.44442 -16.10873 -15.35370 -15.20134 -14.91189 -14.56202 -14.36582 -14.16967 -13.92846 -13.82646 -13.48202 -13.41698 -13.07328 -12.97295 -12.71446 -12.52055 -11.91706 -11.80539 -11.75057 -11.55981 -11.24877 -11.17358 -11.16194 -10.91590 -10.63296 -10.48331 -10.38867 -10.36274 -10.31270 -10.21428 -9.82151 -9.07599 -8.69711 -8.59098 -8.06723 -6.42002 -4.10402 0.05200 0.98086 1.38417 1.68091 1.83267 2.39162 3.11531 3.17856 3.21837 3.26538 3.50880 3.72062 3.93894 4.12490 4.33277 4.43865 4.47883 4.56000 4.72075 4.82537 4.95398 5.07497 5.08410 5.11795 5.19982 5.20270 5.22714 5.39943 5.51047 5.56969 5.63052 5.69231 5.75729 5.84909 5.98758 6.09791 6.11129 6.17944 6.28078 6.30693 6.72954 7.36523 7.37643 7.55419 7.93517 8.67643 9.06347 9.83095 10.75655 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002139 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.597333 B =13087.715090 C =14251.854137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.384 4.384 8 H 0.095 0.905 9 O -0.211 6.211 10 C 0.395 3.605 11 O -0.564 6.564 12 C -0.085 4.085 13 C -0.066 4.066 14 C 0.409 3.591 15 N -0.473 5.473 16 C 0.072 3.928 17 S 0.207 5.793 18 C -0.214 4.214 19 C -0.031 4.031 20 C -0.248 4.248 21 C 0.570 3.430 22 O -0.519 6.519 23 N -0.638 5.638 24 H 0.421 0.579 25 C -0.056 4.056 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.042 4.042 29 H 0.270 0.730 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -24.333 0.012 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.113 0.887 9 O -0.117 6.117 10 C 0.242 3.758 11 O -0.463 6.463 12 C -0.124 4.124 13 C -0.105 4.105 14 C 0.139 3.861 15 N -0.198 5.198 16 C -0.162 4.162 17 S 0.475 5.525 18 C -0.331 4.331 19 C -0.041 4.041 20 C -0.266 4.266 21 C 0.365 3.635 22 O -0.395 6.395 23 N -0.279 5.279 24 H 0.259 0.741 25 C -0.095 4.095 26 C -0.159 4.159 27 C -0.155 4.155 28 C -0.081 4.081 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.277 -23.325 0.016 24.154 hybrid contribution 2.545 -0.405 -0.009 2.577 sum -3.732 -23.730 0.007 24.021 Atomic orbital electron populations 1.69984 1.05989 1.27825 1.46210 1.25342 0.95809 0.98895 0.96181 0.85747 0.78629 0.79491 0.79311 1.19505 1.20397 1.19499 1.21163 0.92316 0.79874 1.52649 0.88711 1.83877 1.39322 1.13371 1.75156 1.23129 0.86582 0.87418 0.78688 1.90550 1.15728 1.88270 1.51713 1.20761 0.97244 0.87905 1.06473 1.20681 0.98028 0.85423 1.06349 1.23426 0.87976 0.89053 0.85681 1.69834 1.04483 1.20999 1.24488 1.24014 1.00491 0.91959 0.99695 1.83995 0.97812 0.98213 1.72473 1.24618 0.97623 0.97356 1.13496 1.19863 0.90556 0.94529 0.99196 1.20562 0.93661 0.93630 1.18753 1.16838 0.87797 0.82021 0.76890 1.90934 1.64224 1.33408 1.50938 1.44508 1.13082 1.06773 1.63562 0.74063 1.20567 0.97831 0.88285 1.02828 1.21594 0.95045 0.99098 1.00137 1.21576 0.97505 0.95950 1.00466 1.20315 0.94003 0.91396 1.02406 0.91992 0.87939 0.87932 0.86992 0.87000 0.89658 0.90301 0.91547 0.91160 0.90992 0.91352 0.90140 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.38 -11.09 9.64 30.92 0.30 -10.79 16 8 H 0.10 2.73 6.86 -52.49 -0.36 2.37 16 9 O -0.21 -5.85 9.75 -20.70 -0.20 -6.05 16 10 C 0.39 9.02 7.91 36.01 0.28 9.30 16 11 O -0.56 -13.79 15.22 -19.05 -0.29 -14.08 16 12 C -0.09 -1.39 4.98 -27.88 -0.14 -1.53 16 13 C -0.07 -0.81 4.88 -27.88 -0.14 -0.95 16 14 C 0.41 4.94 7.60 -154.73 -1.18 3.76 16 15 N -0.47 -6.54 9.14 -8.85 -0.08 -6.62 16 16 C 0.07 0.97 7.50 -15.56 -0.12 0.85 16 17 S 0.21 2.30 23.16 -107.50 -2.49 -0.19 16 18 C -0.21 -2.19 6.30 -35.28 -0.22 -2.42 16 19 C -0.03 -0.36 5.92 -102.82 -0.61 -0.97 16 20 C -0.25 -3.34 6.01 -104.94 -0.63 -3.97 16 21 C 0.57 7.68 7.99 -13.96 -0.11 7.57 16 22 O -0.52 -7.87 16.28 5.02 0.08 -7.79 16 23 N -0.64 -7.04 5.21 -11.36 -0.06 -7.10 16 24 H 0.42 3.47 8.69 -40.82 -0.35 3.11 16 25 C -0.06 -0.56 5.34 -27.11 -0.14 -0.71 16 26 C -0.12 -0.88 5.90 -26.68 -0.16 -1.04 16 27 C -0.12 -0.74 5.94 -26.62 -0.16 -0.90 16 28 C -0.04 -0.30 6.23 -27.33 -0.17 -0.47 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.10 1.61 8.01 -51.93 -0.42 1.20 16 31 H 0.10 1.62 8.02 -51.93 -0.42 1.20 16 32 H 0.11 1.28 8.10 -51.92 -0.42 0.86 16 33 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 34 H 0.08 0.96 7.30 -51.93 -0.38 0.58 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.49 8.10 -51.93 -0.42 0.06 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -34.79 361.23 -10.00 -44.80 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.86 Total: 1.08 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.28 Total: -1.17 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.62 Total: -37.99 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.41 Total: -27.93 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.49 Total: -0.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.79 -10.00 -44.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003336618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.461 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds