Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86799 * 119.99813 * 2 1 4 4 H 1.48504 * 109.46715 * 239.99909 * 3 2 1 5 5 H 1.48497 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47243 * 119.99964 * 3 2 1 7 7 C 1.38750 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99448 * 179.97438 * 7 2 1 9 9 O 1.34916 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99864 * 179.97438 * 9 7 2 11 11 O 1.21206 * 120.00137 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99815 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47321 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47321 * 180.02562 * 13 12 10 15 15 N 1.30854 * 118.12282 * 359.97438 * 14 13 12 16 16 C 1.35171 * 118.03610 * 179.97438 * 15 14 13 17 17 S 1.74597 * 128.88300 * 180.02562 * 16 15 14 18 18 C 1.75819 * 92.34382 * 180.02562 * 17 16 15 19 19 C 1.33958 * 111.37644 * 0.03619 * 18 17 16 20 20 C 1.39625 * 121.42849 * 0.05429 * 16 15 14 21 21 C 1.43263 * 119.22656 * 359.97438 * 20 16 15 22 22 O 1.21884 * 122.25902 * 179.97438 * 21 20 16 23 23 N 1.35463 * 118.12519 * 180.02562 * 14 13 12 24 24 H 0.97002 * 118.96185 * 0.02562 * 23 14 13 25 25 C 1.52338 * 123.12049 * 180.02562 * 19 18 17 26 26 C 1.52928 * 108.95471 * 342.68264 * 25 19 18 27 27 C 1.53176 * 109.10370 * 50.95145 * 26 25 19 28 28 C 1.51781 * 124.25184 * 180.02562 * 18 17 16 29 29 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47432 * 59.99662 * 12 10 9 31 31 H 1.09002 * 109.47259 * 300.00127 * 12 10 9 32 32 H 1.09007 * 109.46974 * 59.99775 * 13 12 10 33 33 H 1.09002 * 109.47072 * 300.00258 * 13 12 10 34 34 H 1.09001 * 109.55141 * 222.84557 * 25 19 18 35 35 H 1.08998 * 109.65880 * 102.58466 * 25 19 18 36 36 H 1.09003 * 109.52871 * 291.06990 * 26 25 19 37 37 H 1.08996 * 109.59282 * 170.88157 * 26 25 19 38 38 H 1.08993 * 109.57216 * 169.69668 * 27 26 25 39 39 H 1.09004 * 109.66862 * 49.39552 * 27 26 25 40 40 H 1.09000 * 109.57012 * 283.19650 * 28 18 17 41 41 H 1.09002 * 109.56948 * 43.55325 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0001 9 8 1.3335 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4330 0.0001 12 6 1.3810 -4.8393 0.0011 13 6 2.4347 -5.9486 0.0004 14 6 1.7505 -7.2913 0.0003 15 7 0.4422 -7.3170 0.0014 16 6 -0.1696 -8.5223 0.0008 17 16 -1.8776 -8.8845 0.0013 18 6 -1.5836 -10.6179 0.0007 19 6 -0.2721 -10.8907 0.0010 20 6 0.5633 -9.7108 0.0002 21 6 1.9946 -9.6500 -0.0003 22 8 2.6883 -10.6521 -0.0004 23 7 2.5251 -8.4027 0.0002 24 1 3.4900 -8.3027 0.0005 25 6 0.2831 -12.3093 0.0000 26 6 -0.8219 -13.2754 0.4294 27 6 -2.0730 -13.0132 -0.4147 28 6 -2.6776 -11.6699 0.0003 29 1 -0.4851 0.8400 0.0004 30 1 0.7578 -4.9300 -0.8886 31 1 0.7585 -4.9295 0.8914 32 1 3.0582 -5.8580 0.8899 33 1 3.0568 -5.8581 -0.8901 34 1 1.1171 -12.3751 0.6987 35 1 0.6253 -12.5685 -1.0019 36 1 -1.0537 -13.1189 1.4829 37 1 -0.4888 -14.3022 0.2781 38 1 -2.7996 -13.8081 -0.2472 39 1 -1.8033 -12.9816 -1.4704 40 1 -3.1034 -11.7544 1.0001 41 1 -3.4567 -11.3862 -0.7073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003336618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -109.021204 kcal Electronic energy + Delta-G solvation = -26906.226126 eV Core-core repulsion = 22876.019851 eV Total energy + Delta-G solvation = -4030.206274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.73764 -40.98291 -39.58034 -39.07679 -37.38764 -36.10884 -34.70263 -34.25285 -33.47338 -31.74849 -29.83547 -27.95505 -26.56981 -26.40298 -24.16932 -23.62581 -22.90875 -21.38281 -20.12177 -19.91292 -19.77981 -18.90778 -18.46549 -18.10665 -17.53417 -17.21198 -16.83910 -16.51588 -16.19612 -15.97192 -15.63920 -15.33554 -14.85126 -14.75252 -14.50876 -14.36273 -14.24007 -13.90592 -13.73343 -13.66559 -13.50749 -13.07916 -13.05868 -12.73893 -12.62504 -12.31509 -12.16025 -12.05781 -11.96941 -11.90379 -11.73116 -11.34229 -11.30535 -11.25099 -11.11700 -10.97294 -10.66443 -9.61670 -8.97566 -8.50097 -6.29727 -0.90277 0.08734 0.37926 0.80646 0.92473 1.34892 1.35296 1.41490 1.53064 1.69495 2.14995 2.26272 2.65549 2.91868 3.01673 3.25329 3.53995 3.62661 3.83691 3.92677 4.01054 4.07725 4.11888 4.18261 4.28891 4.48513 4.53428 4.60379 4.76571 4.82052 4.85213 4.88993 4.94868 4.99557 5.01937 5.11181 5.18378 5.22514 5.29769 5.35200 5.44085 5.49709 5.86915 6.37135 6.55968 6.71340 6.95367 7.81771 8.70385 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002139 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.597333 B =13087.715090 C =14251.854137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.007 4.007 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.418 4.418 8 H 0.085 0.915 9 O -0.247 6.247 10 C 0.398 3.602 11 O -0.579 6.579 12 C -0.072 4.072 13 C -0.054 4.054 14 C 0.415 3.585 15 N -0.492 5.492 16 C 0.047 3.953 17 S 0.222 5.778 18 C -0.199 4.199 19 C -0.057 4.057 20 C -0.262 4.262 21 C 0.566 3.434 22 O -0.542 6.542 23 N -0.624 5.624 24 H 0.434 0.566 25 C -0.053 4.053 26 C -0.117 4.117 27 C -0.112 4.112 28 C -0.045 4.045 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 -25.249 0.018 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.207 4.207 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.103 0.897 9 O -0.155 6.155 10 C 0.246 3.754 11 O -0.477 6.477 12 C -0.111 4.111 13 C -0.093 4.093 14 C 0.145 3.855 15 N -0.217 5.217 16 C -0.186 4.186 17 S 0.490 5.510 18 C -0.316 4.316 19 C -0.067 4.067 20 C -0.280 4.280 21 C 0.361 3.639 22 O -0.420 6.420 23 N -0.267 5.267 24 H 0.275 0.725 25 C -0.092 4.092 26 C -0.155 4.155 27 C -0.151 4.151 28 C -0.084 4.084 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.854 -24.255 0.022 25.205 hybrid contribution 2.695 -0.258 -0.010 2.708 sum -4.159 -24.513 0.012 24.863 Atomic orbital electron populations 1.70078 1.07667 1.29319 1.47096 1.26528 0.96846 1.02441 0.94896 0.84703 0.77557 0.74474 0.79773 1.18589 1.18789 1.18575 1.21379 0.92202 0.81173 1.54669 0.89697 1.83903 1.40528 1.14349 1.76748 1.24348 0.86642 0.88293 0.76126 1.90524 1.16761 1.88715 1.51749 1.20794 0.97983 0.85119 1.07178 1.20580 0.96961 0.84024 1.07731 1.23180 0.87654 0.88916 0.85759 1.69765 1.05279 1.21624 1.25041 1.24253 1.01718 0.91810 1.00813 1.83900 0.96391 0.98983 1.71752 1.25098 0.98046 0.97487 1.10947 1.20109 0.91064 0.94849 1.00676 1.20832 0.93892 0.94487 1.18809 1.16943 0.87997 0.82243 0.76718 1.90916 1.64704 1.34151 1.52230 1.44284 1.13776 1.05856 1.62739 0.72513 1.20548 0.98311 0.88263 1.02098 1.21596 0.94568 0.99035 1.00284 1.21592 0.97453 0.96132 0.99956 1.20547 0.93329 0.90745 1.03819 0.91332 0.87135 0.87127 0.85705 0.85716 0.91495 0.90846 0.91461 0.89659 0.88468 0.91702 0.88613 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.12 13.67 21.62 0.30 -52.83 16 2 C -0.01 -0.39 5.49 84.87 0.47 0.07 16 3 Si 1.02 42.76 29.55 68.60 2.03 44.78 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.42 -24.72 9.64 67.94 0.66 -24.06 16 8 H 0.09 5.02 6.86 -2.91 -0.02 5.00 16 9 O -0.25 -14.06 9.75 14.87 0.14 -13.92 16 10 C 0.40 18.31 7.91 71.24 0.56 18.87 16 11 O -0.58 -28.39 15.22 20.79 0.32 -28.07 16 12 C -0.07 -2.32 4.98 29.85 0.15 -2.17 16 13 C -0.05 -1.27 4.88 29.85 0.15 -1.12 16 14 C 0.42 9.67 7.60 137.89 1.05 10.72 16 15 N -0.49 -13.33 9.14 -181.93 -1.66 -14.99 16 16 C 0.05 1.26 7.50 84.51 0.63 1.89 16 17 S 0.22 4.71 23.16 -56.49 -1.31 3.40 16 18 C -0.20 -3.79 6.30 25.06 0.16 -3.63 16 19 C -0.06 -1.30 5.92 -18.70 -0.11 -1.41 16 20 C -0.26 -7.03 6.01 -20.07 -0.12 -7.15 16 21 C 0.57 15.28 7.99 85.38 0.68 15.96 16 22 O -0.54 -16.67 16.28 -4.94 -0.08 -16.75 16 23 N -0.62 -13.38 5.21 -307.54 -1.60 -14.99 16 24 H 0.43 6.74 8.69 -92.71 -0.81 5.94 16 25 C -0.05 -1.04 5.34 30.35 0.16 -0.88 16 26 C -0.12 -1.49 5.90 30.63 0.18 -1.31 16 27 C -0.11 -1.12 5.94 30.67 0.18 -0.94 16 28 C -0.05 -0.52 6.23 30.21 0.19 -0.34 16 29 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.11 3.42 8.01 -2.39 -0.02 3.40 16 31 H 0.11 3.42 8.02 -2.39 -0.02 3.40 16 32 H 0.13 2.65 8.10 -2.38 -0.02 2.63 16 33 H 0.12 2.65 8.10 -2.39 -0.02 2.63 16 34 H 0.07 1.54 7.30 -2.39 -0.02 1.52 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.71 8.11 -2.38 -0.02 0.70 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -76.95 361.23 3.41 -73.55 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.29 Total: 15.30 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 4.98 Total: 4.51 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.97 Total: -82.81 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: 0.38 Total: -58.74 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.31 Total: 3.40 kcal Total: -76.95 3.41 -73.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003336618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.475 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds