Wall clock time and date at job start Tue Mar 31 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35953 * 116.99903 * 2 1 4 4 C 1.38063 * 120.00190 * 0.02562 * 3 2 1 5 5 C 1.40001 * 119.83890 * 179.97438 * 4 3 2 6 6 C 1.46921 * 120.08263 * 179.97438 * 5 4 3 7 7 C 1.35139 * 120.00225 * 180.02562 * 6 5 4 8 8 C 1.41767 * 119.99805 * 180.02562 * 7 6 5 9 9 O 1.21653 * 120.00383 * 359.97438 * 8 7 6 10 10 O 1.34946 * 119.99790 * 179.97438 * 8 7 6 11 11 C 1.42905 * 116.99672 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46744 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99848 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99720 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99628 * 179.97438 * 14 12 11 16 16 C 1.46493 * 119.99969 * 359.97438 * 14 12 11 17 17 C 1.40058 * 119.84013 * 0.25457 * 5 4 3 18 18 C 1.37641 * 119.99671 * 359.49185 * 17 5 4 19 19 C 1.39070 * 120.15884 * 0.50614 * 18 17 5 20 20 O 1.35608 * 119.91457 * 179.76480 * 19 18 17 21 21 C 1.34759 * 117.00250 * 354.38393 * 20 19 18 22 22 H 1.07999 * 119.99451 * 5.06975 * 21 20 19 23 23 C 1.38714 * 120.00142 * 185.06373 * 21 20 19 24 24 N 1.31517 * 119.99703 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99929 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47549 * 89.99846 * 25 23 21 27 27 H 1.48508 * 109.46983 * 210.00032 * 25 23 21 28 28 H 1.48502 * 109.47047 * 329.99625 * 25 23 21 29 29 H 1.08998 * 109.47061 * 299.99717 * 1 2 3 30 30 H 1.08993 * 109.47230 * 60.00076 * 1 2 3 31 31 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.08086 * 359.95736 * 4 3 2 33 33 H 1.07994 * 119.99460 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.99868 * 359.97438 * 7 6 5 35 35 H 1.08997 * 109.47131 * 300.00063 * 11 10 8 36 36 H 1.08993 * 109.47288 * 60.00564 * 11 10 8 37 37 H 1.08996 * 109.47294 * 0.02562 * 15 14 12 38 38 H 1.09006 * 109.46851 * 119.99778 * 15 14 12 39 39 H 1.09000 * 109.47299 * 239.99718 * 15 14 12 40 40 H 1.09004 * 109.47267 * 90.00719 * 16 14 12 41 41 H 1.09000 * 109.47358 * 209.99840 * 16 14 12 42 42 H 1.09002 * 109.47732 * 330.00479 * 16 14 12 43 43 H 1.08001 * 120.00062 * 179.72582 * 17 5 4 44 44 H 1.08000 * 119.92007 * 180.23093 * 18 17 5 45 45 H 0.96999 * 119.99345 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3693 0.0005 5 6 1.9333 3.6149 0.0011 6 6 1.1384 4.8505 0.0011 7 6 1.7570 6.0520 0.0011 8 6 0.9899 7.2441 0.0016 9 8 -0.2252 7.1857 0.0016 10 8 1.6076 8.4439 0.0022 11 6 0.7725 9.6035 0.0033 12 6 1.6320 10.8415 0.0031 13 8 2.8406 10.7406 0.0026 14 7 1.0575 12.0607 0.0045 15 6 1.8930 13.2640 0.0049 16 6 -0.4024 12.1825 0.0057 17 6 3.3324 3.6803 -0.0043 18 6 4.0755 2.5218 0.0004 19 6 3.4406 1.2845 0.0000 20 8 4.1776 0.1461 -0.0002 21 6 5.5132 0.2820 -0.1173 22 1 5.9573 1.2664 -0.1232 23 6 6.3175 -0.8425 -0.2303 24 7 5.7766 -2.0413 -0.2225 25 14 8.1688 -0.6542 -0.3920 26 1 8.7863 -0.6535 0.9586 27 1 8.7141 -1.7852 -1.1850 28 1 8.4781 0.6260 -1.0782 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2157 2.3143 0.0003 33 1 0.0597 4.7985 0.0011 34 1 2.8358 6.1039 0.0015 35 1 0.1428 9.5987 -0.8864 36 1 0.1437 9.5976 0.8935 37 1 2.9443 12.9764 0.0034 38 1 1.6775 13.8563 -0.8845 39 1 1.6788 13.8548 0.8955 40 1 -0.7637 12.2119 1.0337 41 1 -0.6909 13.1000 -0.5071 42 1 -0.8389 11.3262 -0.5084 43 1 3.8281 4.6399 -0.0084 44 1 5.1543 2.5737 0.0000 45 1 6.3390 -2.8276 -0.3019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003353045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:22 Heat of formation + Delta-G solvation = -124.153354 kcal Electronic energy + Delta-G solvation = -28881.054702 eV Core-core repulsion = 24445.553810 eV Total energy + Delta-G solvation = -4435.500892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 349.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.83091 -39.86982 -39.67980 -37.75428 -36.98650 -36.33475 -35.88093 -33.25402 -32.39439 -30.36334 -29.79509 -28.90598 -27.93753 -26.75833 -25.99215 -25.55521 -23.86031 -21.90663 -21.34926 -19.94509 -19.36496 -18.31738 -18.13871 -17.56070 -17.23068 -17.05069 -16.63235 -16.19539 -15.79476 -15.68622 -15.26326 -15.24365 -14.73871 -14.14826 -14.03885 -13.99713 -13.77676 -13.67236 -13.54019 -13.20896 -13.08105 -12.90404 -12.85724 -12.49378 -12.38716 -12.14093 -11.88425 -11.76721 -11.52401 -11.15736 -11.09889 -10.86757 -10.83519 -10.77071 -10.57544 -10.48340 -10.14898 -9.66234 -9.51418 -9.20050 -8.92780 -8.05561 -7.00117 -6.69884 -4.18970 0.70739 2.06941 2.12666 2.16234 2.30901 3.02161 3.03328 3.08766 3.10661 3.32033 3.78225 3.89022 4.03511 4.39465 4.50790 4.72051 4.75580 4.82354 4.82837 4.91130 4.93692 5.04824 5.11180 5.15193 5.15916 5.38565 5.41073 5.50076 5.50406 5.52952 5.68514 5.79038 5.90030 5.91323 6.14926 6.21420 6.39436 6.39875 6.50310 6.76927 6.77651 6.94444 7.02306 7.18913 7.40841 7.69795 7.71004 7.88549 8.01893 8.72928 9.40379 10.45254 Molecular weight = 349.14amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.001852 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.326923 B =15118.309057 C =17105.183547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.131 4.131 5 C -0.180 4.180 6 C 0.067 3.933 7 C -0.278 4.278 8 C 0.512 3.488 9 O -0.536 6.536 10 O -0.332 6.332 11 C 0.052 3.948 12 C 0.515 3.485 13 O -0.513 6.513 14 N -0.622 5.622 15 C 0.081 3.919 16 C 0.073 3.927 17 C -0.048 4.048 18 C -0.228 4.228 19 C 0.152 3.848 20 O -0.141 6.141 21 C -0.389 4.389 22 H 0.100 0.900 23 C 0.042 3.958 24 N -0.840 5.840 25 Si 0.947 3.053 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.263 1.263 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.139 0.861 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 21.793 0.173 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.151 4.151 5 C -0.181 4.181 6 C 0.048 3.952 7 C -0.297 4.297 8 C 0.363 3.637 9 O -0.429 6.429 10 O -0.248 6.248 11 C -0.026 4.026 12 C 0.302 3.698 13 O -0.387 6.387 14 N -0.359 5.359 15 C -0.061 4.061 16 C -0.070 4.070 17 C -0.066 4.066 18 C -0.247 4.247 19 C 0.094 3.906 20 O -0.041 6.041 21 C -0.464 4.464 22 H 0.118 0.882 23 C -0.166 4.166 24 N -0.471 5.471 25 Si 0.770 3.230 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.188 1.188 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.138 0.862 44 H 0.157 0.843 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.314 20.998 0.171 23.853 hybrid contribution 0.322 0.472 -0.061 0.575 sum -10.992 21.470 0.110 24.121 Atomic orbital electron populations 1.22922 0.80112 1.03136 1.00426 1.86237 1.19626 1.26134 1.89723 1.18015 0.89333 0.84630 1.07456 1.20863 0.98606 0.90828 1.04762 1.18086 0.92837 0.91125 1.16086 1.22382 0.99186 0.90804 0.82829 1.20824 1.01151 0.89099 1.18661 1.20095 0.86827 0.83749 0.72994 1.90838 1.15312 1.87836 1.48934 1.86294 1.39722 1.13864 1.84947 1.22190 0.92591 0.83245 1.04546 1.20224 0.88732 0.84228 0.76622 1.90757 1.14266 1.86081 1.47612 1.47607 1.07607 1.05837 1.74869 1.21713 0.97220 0.85761 1.01424 1.21900 0.78984 1.03643 1.02485 1.21037 0.92464 0.97669 0.95469 1.20849 1.00854 0.90652 1.12367 1.18919 0.88271 0.87589 0.95819 1.83974 1.19873 1.26100 1.74156 1.21603 0.78260 0.95276 1.51239 0.88242 1.25464 1.01133 0.94099 0.95902 1.70046 1.36883 0.97915 1.42228 0.85615 0.79516 0.78853 0.78992 1.19510 1.19967 1.18765 0.93418 0.93409 0.88926 0.85740 0.85613 0.84499 0.88587 0.88570 0.89282 0.91978 0.91994 0.91990 0.90446 0.90666 0.86150 0.84323 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.30 10.28 -34.20 -0.35 -6.65 16 3 C 0.05 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.13 -2.28 8.78 -38.99 -0.34 -2.62 16 5 C -0.18 -3.05 5.87 -105.04 -0.62 -3.66 16 6 C 0.07 0.99 9.41 -37.17 -0.35 0.64 16 7 C -0.28 -4.08 9.33 -39.34 -0.37 -4.45 16 8 C 0.51 7.65 7.70 32.08 0.25 7.89 16 9 O -0.54 -8.55 15.88 -19.38 -0.31 -8.86 16 10 O -0.33 -4.80 9.64 -47.93 -0.46 -5.26 16 11 C 0.05 0.56 4.41 36.01 0.16 0.72 16 12 C 0.52 5.86 7.75 -10.98 -0.09 5.78 16 13 O -0.51 -8.03 15.83 -14.36 -0.23 -8.26 16 14 N -0.62 -4.80 3.27 -189.52 -0.62 -5.42 16 15 C 0.08 0.50 10.68 59.85 0.64 1.14 16 16 C 0.07 0.29 10.28 59.84 0.62 0.91 16 17 C -0.05 -0.85 9.40 -39.12 -0.37 -1.21 16 18 C -0.23 -4.66 9.14 -39.49 -0.36 -5.02 16 19 C 0.15 3.55 6.67 -38.75 -0.26 3.29 16 20 O -0.14 -3.89 9.52 -13.92 -0.13 -4.02 16 21 C -0.39 -10.26 9.48 30.91 0.29 -9.96 16 22 H 0.10 2.38 5.18 -52.49 -0.27 2.11 16 23 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 24 N -0.84 -23.43 13.67 55.48 0.76 -22.67 16 25 Si 0.95 19.31 29.55 -169.99 -5.02 14.29 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 29 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 30 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.12 1.78 6.28 -52.49 -0.33 1.45 16 33 H 0.13 1.73 7.45 -52.49 -0.39 1.34 16 34 H 0.14 1.92 6.06 -52.49 -0.32 1.60 16 35 H 0.10 0.85 7.39 -51.93 -0.38 0.47 16 36 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.09 0.74 6.90 -51.93 -0.36 0.38 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 42 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16 43 H 0.12 1.81 6.15 -52.49 -0.32 1.49 16 44 H 0.14 2.76 5.61 -52.49 -0.29 2.47 16 45 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -34.40 389.70 -6.12 -40.52 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.47 Total: 3.82 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -0.16 Total: -3.36 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.14 Total: -28.09 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.48 Total: -33.05 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.40 -6.12 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003353045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.637 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds