Wall clock time and date at job start Tue Mar 31 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48501 * 109.46962 * 240.00087 * 3 2 1 5 5 H 1.48503 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47023 * 120.00176 * 3 2 1 7 7 C 1.37870 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00054 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.34165 * 125.16075 * 124.99840 * 10 9 7 12 12 C 1.37961 * 107.88645 * 180.02562 * 11 10 9 13 13 C 1.47290 * 126.80897 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99943 * 359.96667 * 13 12 11 15 15 O 1.21617 * 120.00077 * 179.97438 * 13 12 11 16 16 C 1.46601 * 106.38629 * 0.02562 * 12 11 10 17 17 C 1.48289 * 126.51222 * 179.97438 * 16 12 11 18 18 C 1.39405 * 120.11946 * 145.00238 * 17 16 12 19 19 C 1.37992 * 119.89623 * 179.97438 * 18 17 16 20 20 C 1.38338 * 120.13283 * 359.97438 * 19 18 17 21 21 C 1.38395 * 120.24161 * 0.02562 * 20 19 18 22 22 Br 1.89101 * 119.94412 * 180.02562 * 21 20 19 23 23 C 1.38116 * 120.10748 * 359.97438 * 21 20 19 24 24 N 1.31364 * 106.97256 * 0.22575 * 16 12 11 25 25 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47041 * 60.00602 * 9 7 2 27 27 H 1.08995 * 109.46959 * 300.00025 * 9 7 2 28 28 H 1.07995 * 126.05515 * 359.97438 * 11 10 9 29 29 H 0.97000 * 119.99554 * 0.02562 * 14 13 12 30 30 H 0.96994 * 119.99676 * 180.02562 * 14 13 12 31 31 H 1.08004 * 120.05112 * 359.69655 * 18 17 16 32 32 H 1.08000 * 119.93579 * 179.97438 * 19 18 17 33 33 H 1.08005 * 119.87425 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.07246 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.2268 -4.6087 0.8980 12 6 3.2618 -5.4570 0.5627 13 6 3.6601 -6.6859 1.2703 14 7 2.9852 -7.0801 2.3684 15 8 4.5980 -7.3448 0.8639 16 6 3.8867 -4.8929 -0.6375 17 6 5.0457 -5.4518 -1.3745 18 6 5.1147 -5.3353 -2.7619 19 6 6.1957 -5.8566 -3.4430 20 6 7.2105 -6.4938 -2.7517 21 6 7.1477 -6.6127 -1.3743 22 35 8.5400 -7.4847 -0.4378 23 6 6.0704 -6.0945 -0.6826 24 7 3.2282 -3.7952 -0.9328 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8896 28 1 1.5553 -4.7253 1.7357 29 1 2.2370 -6.5547 2.6923 30 1 3.2477 -7.8891 2.8345 31 1 4.3212 -4.8416 -3.3033 32 1 6.2496 -5.7671 -4.5180 33 1 8.0548 -6.9000 -3.2890 34 1 6.0218 -6.1880 0.3923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003372279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:14 Heat of formation + Delta-G solvation = 58.487658 kcal Electronic energy + Delta-G solvation = -21464.662335 eV Core-core repulsion = 18023.989392 eV Total energy + Delta-G solvation = -3440.672943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 349.017 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73119 -38.81878 -38.52043 -33.98713 -33.56064 -32.62859 -31.86528 -30.42704 -29.88272 -28.89638 -27.14919 -23.88669 -23.35616 -22.24314 -21.61109 -19.84179 -19.33858 -17.83137 -16.80375 -16.40147 -16.27253 -15.63225 -15.11908 -15.09216 -14.60161 -14.26974 -13.99541 -13.76971 -13.36143 -13.18108 -13.13765 -12.43208 -12.35003 -11.93072 -11.36991 -11.18414 -11.04881 -10.96361 -10.74910 -10.41187 -10.29925 -10.15110 -9.94643 -9.72787 -9.45379 -9.26100 -8.76660 -8.52482 -8.43959 -7.87945 -6.39740 -4.46083 1.10538 1.44654 1.77953 1.97523 2.70966 3.10441 3.18019 3.21899 3.27790 3.68495 3.82889 3.98813 4.19822 4.61840 4.88405 4.97172 5.06837 5.16422 5.35749 5.43346 5.57995 5.64125 5.81312 5.89802 6.07289 6.33100 6.43171 6.51990 6.72392 6.77166 6.90037 6.93527 7.04678 7.42847 7.53102 7.65735 7.67500 8.21405 8.55635 8.61271 9.21140 10.69180 Molecular weight = 349.02amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003113 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.547647 B = 8991.888314 C = 9930.862872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.250 3.750 10 N -0.308 5.308 11 C 0.101 3.899 12 C -0.316 4.316 13 C 0.601 3.399 14 N -0.858 5.858 15 O -0.548 6.548 16 C 0.134 3.866 17 C -0.004 4.004 18 C -0.076 4.076 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.099 4.099 22 Br -0.061 7.061 23 C -0.029 4.029 24 N -0.257 5.257 25 H 0.270 0.730 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.177 0.823 29 H 0.397 0.603 30 H 0.400 0.600 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 -14.771 0.815 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.133 3.867 10 N -0.084 5.084 11 C -0.053 4.053 12 C -0.332 4.332 13 C 0.390 3.610 14 N -0.421 5.421 15 O -0.427 6.427 16 C -0.033 4.033 17 C -0.007 4.007 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.178 4.178 22 Br 0.024 6.976 23 C -0.050 4.050 24 N -0.077 5.077 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.194 0.806 29 H 0.225 0.775 30 H 0.230 0.770 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.334 -14.085 -0.043 17.470 hybrid contribution -0.459 0.471 0.837 1.064 sum 9.875 -13.615 0.793 16.838 Atomic orbital electron populations 1.69894 1.06079 1.28054 1.49049 1.24921 0.94995 0.99635 0.94199 0.86359 0.79411 0.81515 0.79141 1.19739 1.20922 1.19923 1.21152 0.94026 0.89091 1.53130 0.91141 1.19962 0.85630 0.81260 0.99836 1.49281 1.22737 1.19002 1.17412 1.22925 0.97891 0.89220 0.95260 1.20923 1.05724 1.02478 1.04061 1.17264 0.81190 0.83450 0.79114 1.43693 1.36985 1.30593 1.30832 1.90758 1.28892 1.56289 1.66783 1.21588 0.95323 0.92705 0.93709 1.17629 0.91930 0.99021 0.92113 1.21394 0.98058 0.96874 0.93192 1.20972 0.94064 0.99672 0.99976 1.21108 0.99082 0.98582 0.92132 1.21545 0.96084 1.05634 0.94577 1.96626 1.46441 1.78050 1.76508 1.21562 0.89646 0.91809 1.01987 1.77476 1.00638 1.16047 1.13568 0.92056 0.93018 0.92250 0.80576 0.77480 0.77008 0.85020 0.85149 0.85426 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.47 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.92 9.20 -34.44 -0.32 -14.23 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.25 5.72 6.21 -5.19 -0.03 5.68 16 10 N -0.31 -6.31 3.62 -62.04 -0.22 -6.54 16 11 C 0.10 1.65 10.89 -16.63 -0.18 1.47 16 12 C -0.32 -5.36 6.26 -102.95 -0.64 -6.01 16 13 C 0.60 9.08 7.95 -12.58 -0.10 8.98 16 14 N -0.86 -8.72 8.87 30.40 0.27 -8.45 16 15 O -0.55 -9.61 13.28 5.26 0.07 -9.54 16 16 C 0.13 2.57 6.94 -80.56 -0.56 2.01 16 17 C 0.00 -0.07 5.73 -104.92 -0.60 -0.67 16 18 C -0.08 -1.16 9.76 -39.24 -0.38 -1.55 16 19 C -0.13 -1.64 10.03 -39.63 -0.40 -2.04 16 20 C -0.09 -1.15 9.78 -39.49 -0.39 -1.53 16 21 C -0.10 -1.47 6.22 -39.57 -0.25 -1.72 16 22 Br -0.06 -0.81 33.69 -68.01 -2.29 -3.10 16 23 C -0.03 -0.49 7.51 -39.21 -0.29 -0.78 16 24 N -0.26 -5.49 12.27 34.57 0.42 -5.07 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 28 H 0.18 2.02 7.48 -52.49 -0.39 1.63 16 29 H 0.40 3.03 7.78 -40.82 -0.32 2.71 16 30 H 0.40 3.35 8.93 -40.82 -0.36 2.99 16 31 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.15 2.72 5.64 -52.49 -0.30 2.43 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -30.37 324.13 -8.42 -38.79 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.02 Total: 5.48 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -4.24 Total: -8.76 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 1.21 Total: -43.19 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -2.29 Total: -3.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.37 -8.42 -38.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003372279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.278 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds