Wall clock time and date at job start Tue Mar 31 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76197 * 103.00015 * 2 1 4 4 C 1.38977 * 120.08183 * 179.97438 * 3 2 1 5 5 C 1.38079 * 119.91925 * 180.27352 * 4 3 2 6 6 C 1.38297 * 120.08327 * 359.49364 * 5 4 3 7 7 S 1.76199 * 119.92173 * 180.23262 * 6 5 4 8 8 O 1.42099 * 106.40031 * 18.29566 * 7 6 5 9 9 O 1.42105 * 106.40179 * 151.21166 * 7 6 5 10 10 N 1.65596 * 107.21877 * 264.74996 * 7 6 5 11 11 C 1.38860 * 119.99809 * 62.86140 * 10 7 6 12 12 C 1.39557 * 119.84265 * 253.79646 * 11 10 7 13 13 C 1.36348 * 120.15840 * 179.71826 * 12 11 10 14 14 C 1.40883 * 119.83468 * 0.55313 * 13 12 11 15 15 C 1.41142 * 120.15526 * 179.70070 * 14 13 12 16 16 H 1.07997 * 120.00113 * 205.14785 * 15 14 13 17 17 C 1.39870 * 119.99657 * 25.13901 * 15 14 13 18 18 N 1.30899 * 120.00264 * 15.24367 * 17 15 14 19 19 Si 1.86800 * 119.99737 * 195.23478 * 17 15 14 20 20 H 1.48498 * 109.47157 * 60.00762 * 19 17 15 21 21 H 1.48495 * 109.47093 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47044 * 300.00646 * 19 17 15 23 23 C 1.40880 * 119.69100 * 359.72166 * 14 13 12 24 24 C 1.36335 * 119.83585 * 359.97438 * 23 14 13 25 25 C 1.38311 * 120.15977 * 0.50801 * 6 5 4 26 26 C 1.38082 * 120.07636 * 359.74442 * 25 6 5 27 27 H 1.08997 * 109.46761 * 60.00120 * 1 2 3 28 28 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47052 * 300.00085 * 1 2 3 30 30 H 1.08007 * 120.03669 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.95515 * 179.75089 * 5 4 3 32 32 H 0.96998 * 120.00154 * 242.86467 * 10 7 6 33 33 H 1.07998 * 119.92302 * 359.97438 * 12 11 10 34 34 H 1.08003 * 120.07726 * 180.27285 * 13 12 11 35 35 H 0.96995 * 120.00243 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.08421 * 179.97438 * 23 14 13 37 37 H 1.08010 * 119.92009 * 179.97438 * 24 23 14 38 38 H 1.07992 * 119.95863 * 179.72568 * 25 6 5 39 39 H 1.08000 * 120.03992 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1250 0.0005 5 6 3.8457 3.4713 0.0062 6 6 2.8329 4.4131 0.0009 7 16 3.2293 6.1299 0.0020 8 8 4.5827 6.2295 -0.4194 9 8 2.1587 6.7894 -0.6601 10 7 3.1909 6.6409 1.5767 11 6 4.0795 6.1083 2.5013 12 6 3.6248 5.1995 3.4578 13 6 4.4929 4.6682 4.3651 14 6 5.8495 5.0476 4.3426 15 6 6.7527 4.5066 5.2827 16 1 7.6466 5.0514 5.5480 17 6 6.4898 3.2651 5.8707 18 7 5.5879 2.4720 5.3500 19 14 7.4259 2.7386 7.3991 20 1 7.1773 3.7128 8.4919 21 1 6.9655 1.3917 7.8221 22 1 8.8793 2.6926 7.0980 23 6 6.3002 5.9699 3.3778 24 6 5.4222 6.4884 2.4728 25 6 1.5097 4.0106 0.0003 26 6 1.1953 2.6661 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.3303 1.3901 0.0014 31 1 4.8778 3.7892 0.0107 32 1 2.5476 7.3121 1.8532 33 1 2.5836 4.9132 3.4769 34 1 4.1404 3.9616 5.1020 35 1 5.4059 1.6109 5.7575 36 1 7.3387 6.2656 3.3551 37 1 5.7662 7.1959 1.7327 38 1 0.7215 4.7488 0.0006 39 1 0.1619 2.3525 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003612892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:51 Heat of formation + Delta-G solvation = -29.211271 kcal Electronic energy + Delta-G solvation = -25633.960096 eV Core-core repulsion = 21952.248849 eV Total energy + Delta-G solvation = -3681.711247 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 349.059 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.96475 -38.02438 -36.76392 -35.44214 -34.81150 -32.86192 -31.54394 -31.14424 -29.62798 -29.08197 -28.77384 -24.79533 -23.42031 -22.73137 -21.18530 -20.83259 -19.16665 -18.13332 -17.51443 -17.31375 -17.09966 -16.39777 -15.60997 -15.35211 -14.94050 -14.72145 -14.38736 -14.10779 -14.05296 -13.71736 -13.62880 -13.12238 -13.00697 -12.85932 -12.43208 -12.29608 -12.13518 -11.71178 -11.70145 -11.61580 -11.37704 -11.33987 -11.23465 -10.89464 -10.87170 -10.73593 -10.36485 -10.12417 -9.95331 -9.81670 -9.31211 -9.01734 -8.95878 -7.68578 -7.67031 -7.39346 -6.92015 -4.51279 0.64321 0.93269 1.29088 1.36067 2.15864 2.57707 2.98165 3.00264 3.02042 3.07818 3.31028 3.63919 3.80558 4.14796 4.44213 4.59108 4.76643 4.78013 4.83279 4.93636 5.27928 5.35067 5.50518 5.52628 5.62367 5.93209 5.99473 6.16605 6.17319 6.20182 6.26974 6.35063 6.81197 6.86056 6.91262 7.05389 7.19422 7.34050 7.48164 7.88514 7.93408 7.99894 8.13831 8.47027 8.71402 8.81913 9.99700 Molecular weight = 349.06amu Principal moments of inertia in cm(-1) A = 0.008714 B = 0.004359 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.322733 B = 6421.320200 C = 8972.210339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.106 6.106 3 C -0.036 4.036 4 C -0.118 4.118 5 C 0.016 3.984 6 C -0.668 4.668 7 S 2.677 3.323 8 O -0.956 6.956 9 O -0.982 6.982 10 N -1.030 6.030 11 C -0.037 4.037 12 C -0.083 4.083 13 C -0.165 4.165 14 C 0.119 3.881 15 C -0.447 4.447 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.782 5.782 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.224 4.224 24 C -0.063 4.063 25 C -0.002 4.002 26 C -0.162 4.162 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.407 0.593 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.284 0.716 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 -3.820 -6.485 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.138 5.862 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.006 4.006 6 C -0.757 4.757 7 S 2.770 3.230 8 O -0.945 6.945 9 O -0.972 6.972 10 N -0.784 5.784 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.185 4.185 14 C 0.116 3.884 15 C -0.476 4.476 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.244 4.244 24 C -0.084 4.084 25 C -0.023 4.023 26 C -0.187 4.187 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.243 0.757 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.155 0.845 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.438 -4.783 -7.329 12.157 hybrid contribution -0.999 0.208 1.174 1.556 sum -9.436 -4.574 -6.155 12.159 Atomic orbital electron populations 1.23719 0.94881 1.07193 1.05921 1.85609 1.06282 1.02844 1.91499 1.22002 0.97036 0.96547 0.99304 1.20872 0.94313 0.96446 1.02618 1.20920 0.99215 0.91810 0.88613 1.30985 1.00426 1.26362 1.17896 1.02832 0.73666 0.73418 0.73130 1.93556 1.35024 1.85643 1.80325 1.93519 1.56764 1.73598 1.73342 1.52173 1.46837 1.52494 1.26877 1.16596 0.89111 1.07676 0.99931 1.20611 0.97858 0.96098 0.95842 1.21009 0.92884 1.03478 1.01148 1.17742 0.92115 0.89067 0.89483 1.19666 1.06653 1.02091 1.19164 0.90036 1.25989 0.94780 0.96163 0.97655 1.69828 1.26875 1.08212 1.35731 0.86294 0.80512 0.78248 0.81349 1.18671 1.20208 1.18807 1.20667 0.97946 1.06506 0.99292 1.20609 0.92572 0.97727 0.97494 1.20696 0.94540 0.95927 0.91153 1.21147 0.98188 0.93162 1.06171 0.89604 0.87279 0.89437 0.84615 0.83444 0.75662 0.89230 0.85952 0.90491 0.88381 0.88171 0.84486 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.15 101.05 0.92 -0.24 16 2 S -0.11 -1.25 22.56 -107.50 -2.43 -3.68 16 3 C -0.04 -0.51 6.11 -39.03 -0.24 -0.75 16 4 C -0.12 -1.84 9.79 -39.37 -0.39 -2.23 16 5 C 0.02 0.27 9.52 -39.62 -0.38 -0.11 16 6 C -0.67 -11.07 5.86 -39.53 -0.23 -11.31 16 7 S 2.68 46.59 5.70 -107.50 -0.61 45.98 16 8 O -0.96 -19.15 16.08 -57.17 -0.92 -20.07 16 9 O -0.98 -17.81 17.43 -57.17 -1.00 -18.81 16 10 N -1.03 -17.65 5.65 32.51 0.18 -17.46 16 11 C -0.04 -0.75 5.80 -83.69 -0.49 -1.24 16 12 C -0.08 -1.78 9.90 -39.77 -0.39 -2.17 16 13 C -0.16 -3.96 8.63 -39.26 -0.34 -4.30 16 14 C 0.12 2.96 5.58 -106.80 -0.60 2.36 16 15 C -0.45 -11.02 9.04 -37.87 -0.34 -11.36 16 16 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 17 C 0.07 1.72 5.19 -17.34 -0.09 1.63 16 18 N -0.78 -18.82 10.83 55.54 0.60 -18.22 16 19 Si 0.91 17.48 29.59 -169.99 -5.03 12.45 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 C -0.22 -5.19 9.74 -39.27 -0.38 -5.57 16 24 C -0.06 -1.37 9.18 -39.77 -0.37 -1.73 16 25 C 0.00 -0.03 9.51 -39.61 -0.38 -0.41 16 26 C -0.16 -2.16 9.36 -39.37 -0.37 -2.53 16 27 H 0.09 0.59 7.75 -51.93 -0.40 0.19 16 28 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.66 7.75 -51.93 -0.40 0.26 16 30 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.15 2.52 7.50 -52.48 -0.39 2.13 16 32 H 0.41 5.84 8.95 -34.47 -0.31 5.53 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.12 3.04 6.09 -52.48 -0.32 2.72 16 35 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 36 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 37 H 0.10 2.07 7.84 -52.48 -0.41 1.66 16 38 H 0.14 1.70 7.74 -52.49 -0.41 1.30 16 39 H 0.13 1.31 5.88 -52.49 -0.31 1.00 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -29.34 359.53 -12.02 -41.36 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.19 Total: 12.98 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: -4.05 Total: -39.95 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.79 Total: -35.68 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.92 Total: -38.88 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 45.34 SS G_CDS: -3.04 Total: 42.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.34 -12.02 -41.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003612892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.150 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds