Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47026 * 307.57499 * 3 2 1 5 5 C 1.42898 * 114.00098 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47092 * 180.02562 * 5 4 3 7 7 C 1.39598 * 119.14281 * 89.99863 * 6 5 4 8 8 C 1.35732 * 121.72091 * 179.69868 * 7 6 5 9 9 C 1.41164 * 119.59208 * 0.27686 * 8 7 6 10 10 N 1.32871 * 121.08963 * 179.97438 * 9 8 7 11 11 C 1.32843 * 119.55049 * 180.02562 * 10 9 8 12 12 C 1.41176 * 121.09503 * 180.02562 * 11 10 9 13 13 C 1.35717 * 119.59205 * 179.97438 * 12 11 10 14 14 C 1.39607 * 121.72331 * 359.97246 * 13 12 11 15 15 C 1.50706 * 119.13575 * 180.02562 * 14 13 12 16 16 O 1.42904 * 109.46712 * 90.00265 * 15 14 13 17 17 C 1.34928 * 116.99358 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00395 * 359.97438 * 17 16 15 19 19 C 1.38638 * 119.99719 * 179.97438 * 17 16 15 20 20 N 1.31583 * 120.00024 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00064 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46860 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46951 * 119.99960 * 21 19 17 24 24 H 1.48503 * 109.47001 * 240.00054 * 21 19 17 25 25 C 1.35723 * 121.72477 * 0.04809 * 14 13 12 26 26 C 1.41174 * 119.58593 * 359.95888 * 25 14 13 27 27 N 1.32844 * 121.07867 * 180.02562 * 26 25 14 28 28 C 1.32873 * 119.54374 * 179.97438 * 27 26 25 29 29 C 1.35729 * 119.14447 * 270.27009 * 6 5 4 30 30 H 1.08992 * 109.47148 * 187.57695 * 3 2 1 31 31 H 1.08997 * 109.47041 * 67.57253 * 3 2 1 32 32 H 1.08999 * 109.47413 * 60.00107 * 5 4 3 33 33 H 1.09006 * 109.47038 * 299.99998 * 5 4 3 34 34 H 1.08002 * 119.14165 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.20266 * 180.30207 * 8 7 6 36 36 H 1.08001 * 120.19921 * 359.97438 * 12 11 10 37 37 H 1.07994 * 119.14011 * 180.02562 * 13 12 11 38 38 H 1.08997 * 109.46895 * 209.99956 * 15 14 13 39 39 H 1.08995 * 109.46934 * 330.00211 * 15 14 13 40 40 H 0.97004 * 119.99688 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.20531 * 179.97438 * 25 14 13 42 42 H 1.08001 * 120.20540 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0847 -0.8207 1.0678 5 6 4.5092 -0.8885 1.1576 6 6 4.8981 -1.7767 2.3112 7 6 5.0745 -3.1433 2.0875 8 6 5.4304 -3.9899 3.0870 9 6 5.6240 -3.4863 4.3914 10 7 5.9720 -4.2883 5.3919 11 6 6.1457 -3.7818 6.6076 12 6 6.5159 -4.6039 7.6940 13 6 6.6857 -4.0541 8.9231 14 6 6.5043 -2.6882 9.1478 15 6 6.7088 -2.1394 10.5364 16 8 8.0736 -1.7475 10.6974 17 6 8.4256 -1.2313 11.8932 18 1 7.6882 -1.1298 12.6758 19 6 9.7339 -0.8311 12.1175 20 7 10.6324 -0.9552 11.1642 21 14 10.2214 -0.1170 13.7734 22 1 9.0358 -0.0849 14.6670 23 1 11.2796 -0.9611 14.3841 24 1 10.7363 1.2631 13.5850 25 6 6.1481 -1.8417 8.1484 26 6 5.9544 -2.3456 6.8440 27 7 5.6061 -1.5437 5.8438 28 6 5.4323 -2.0505 4.6278 29 6 5.0624 -1.2281 3.5418 30 1 2.9708 1.0194 0.1355 31 1 2.9715 -0.3912 -0.9499 32 1 4.9112 0.1120 1.3174 33 1 4.9126 -1.2985 0.2317 34 1 4.9283 -3.5365 1.0923 35 1 5.5650 -5.0424 2.8853 36 1 6.6631 -5.6638 7.5478 37 1 6.9694 -4.6896 9.7489 38 1 6.0625 -1.2742 10.6839 39 1 6.4621 -2.9066 11.2702 40 1 11.5479 -0.6755 11.3213 41 1 6.0139 -0.7892 8.3499 42 1 4.9149 -0.1683 3.6883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003843438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = 50.000205 kcal Electronic energy + Delta-G solvation = -27446.279313 eV Core-core repulsion = 23357.931956 eV Total energy + Delta-G solvation = -4088.347356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.28361 -39.42462 -38.47355 -37.07163 -36.53914 -35.60207 -35.26525 -32.30053 -31.67879 -31.02021 -30.26389 -28.91857 -27.29173 -26.20819 -24.53442 -23.72169 -23.05915 -22.30907 -21.64795 -19.50887 -18.69063 -18.25822 -17.63901 -17.38827 -17.06570 -16.42592 -16.34606 -15.47984 -15.27560 -15.13820 -14.86075 -14.42431 -14.32823 -14.03036 -14.00046 -13.85238 -13.64667 -13.43285 -13.14260 -12.77733 -12.58745 -12.46223 -12.42670 -12.14782 -12.11661 -11.77885 -11.76215 -11.60740 -11.46152 -11.00256 -10.94404 -10.80350 -10.40704 -10.23144 -9.70060 -9.42162 -9.24106 -9.08808 -8.50845 -8.06169 -7.92302 -6.01555 -3.67388 -0.43976 0.24546 1.21254 1.80221 2.23272 2.25429 2.30764 3.06751 3.27251 3.28951 3.33672 3.35644 3.70928 3.87359 3.89588 3.98411 4.12609 4.29384 4.35049 4.40246 4.48075 4.53249 4.62436 4.74339 4.82652 4.92793 5.00358 5.09309 5.23383 5.31434 5.46730 5.49974 5.65211 5.73885 5.77868 5.96742 6.06738 6.11767 6.17571 6.23492 6.25962 6.31064 6.38764 6.42944 6.80149 6.81901 6.98060 7.26610 7.41201 7.68515 8.35100 9.40922 10.04106 11.18714 Molecular weight = 349.12amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.001812 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.278726 B =15446.723570 C =16239.300903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.210 3.790 3 C 0.159 3.841 4 O -0.375 6.375 5 C 0.105 3.895 6 C -0.082 4.082 7 C -0.084 4.084 8 C -0.084 4.084 9 C 0.103 3.897 10 N -0.418 5.418 11 C 0.116 3.884 12 C -0.104 4.104 13 C -0.056 4.056 14 C -0.035 4.035 15 C 0.101 3.899 16 O -0.286 6.286 17 C -0.367 4.367 18 H 0.066 0.934 19 C 0.026 3.974 20 N -0.885 5.885 21 Si 0.927 3.073 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.073 4.073 26 C 0.114 3.886 27 N -0.407 5.407 28 C 0.093 3.907 29 C -0.050 4.050 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.145 0.855 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 -2.795 -22.603 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.109 4.109 3 C 0.080 3.920 4 O -0.294 6.294 5 C 0.030 3.970 6 C -0.085 4.085 7 C -0.105 4.105 8 C -0.104 4.104 9 C -0.035 4.035 10 N -0.132 5.132 11 C -0.022 4.022 12 C -0.123 4.123 13 C -0.077 4.077 14 C -0.039 4.039 15 C 0.024 3.976 16 O -0.202 6.202 17 C -0.446 4.446 18 H 0.084 0.916 19 C -0.173 4.173 20 N -0.528 5.528 21 Si 0.754 3.246 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.092 4.092 26 C -0.024 4.024 27 N -0.121 5.121 28 C -0.045 4.045 29 C -0.069 4.069 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.163 0.837 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.791 -2.882 -22.647 26.168 hybrid contribution 0.800 0.486 0.901 1.300 sum -11.991 -2.396 -21.745 24.947 Atomic orbital electron populations 1.81258 1.12788 1.07640 1.06956 1.28620 0.94612 0.93705 0.93957 1.19575 0.81857 0.97664 0.92924 1.88055 1.21942 1.68888 1.50467 1.21469 0.80003 0.98989 0.96571 1.19144 1.01208 0.94147 0.94046 1.20701 0.97908 0.92146 0.99734 1.20790 0.99274 1.00705 0.89592 1.20795 0.98123 0.90275 0.94302 1.68745 1.09656 1.36066 0.98746 1.20837 0.97401 0.91820 0.92151 1.20775 1.01132 0.99956 0.90477 1.21033 0.94404 0.94897 0.97331 1.19806 0.94354 0.93070 0.96624 1.21116 0.89310 0.97426 0.89771 1.85742 1.19006 1.80700 1.34731 1.20865 0.94728 1.39753 0.89221 0.91603 1.24979 0.95053 0.98837 0.98461 1.70043 1.02555 1.48275 1.31905 0.85876 0.78612 0.78590 0.81552 1.19825 1.20813 1.20828 1.20774 0.98955 1.00856 0.88665 1.20809 0.97370 0.90119 0.94093 1.68736 1.08678 1.36119 0.98606 1.20700 0.99530 0.91783 0.92452 1.20753 0.96285 1.00151 0.89743 0.88220 0.88266 0.90961 0.90945 0.84759 0.84038 0.83959 0.84193 0.94246 0.94179 0.93143 0.83711 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.30 18.54 42.15 0.78 -3.51 16 2 C 0.21 1.46 15.82 -20.76 -0.33 1.14 16 3 C 0.16 0.42 6.41 34.37 0.22 0.64 16 4 O -0.38 -2.21 10.28 -35.23 -0.36 -2.57 16 5 C 0.11 0.45 6.01 36.00 0.22 0.66 16 6 C -0.08 -0.65 5.47 -105.02 -0.57 -1.23 16 7 C -0.08 -0.64 9.52 -39.97 -0.38 -1.02 16 8 C -0.08 -0.85 10.00 -39.37 -0.39 -1.25 16 9 C 0.10 1.45 6.73 -82.86 -0.56 0.89 16 10 N -0.42 -6.53 10.41 -6.24 -0.06 -6.60 16 11 C 0.12 1.91 6.73 -82.85 -0.56 1.35 16 12 C -0.10 -1.53 10.00 -39.37 -0.39 -1.93 16 13 C -0.06 -0.87 9.52 -39.97 -0.38 -1.25 16 14 C -0.04 -0.64 5.47 -105.01 -0.57 -1.21 16 15 C 0.10 2.08 6.09 36.01 0.22 2.30 16 16 O -0.29 -7.90 9.76 -16.50 -0.16 -8.06 16 17 C -0.37 -10.42 9.89 30.88 0.31 -10.12 16 18 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 19 C 0.03 0.73 5.49 -17.51 -0.10 0.64 16 20 N -0.89 -27.35 13.67 55.48 0.76 -26.59 16 21 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.07 -1.29 9.58 -39.37 -0.38 -1.67 16 26 C 0.11 1.98 6.73 -82.85 -0.56 1.43 16 27 N -0.41 -6.78 10.41 -6.24 -0.06 -6.84 16 28 C 0.09 1.35 6.73 -82.86 -0.56 0.79 16 29 C -0.05 -0.53 9.58 -39.37 -0.38 -0.90 16 30 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.07 0.18 8.06 -51.93 -0.42 -0.23 16 33 H 0.07 0.12 8.07 -51.93 -0.42 -0.30 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.15 2.49 8.06 -52.49 -0.42 2.06 16 42 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -37.97 382.70 -8.12 -46.08 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.60 Total: -3.46 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -5.15 Total: -10.74 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 1.41 Total: -43.54 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.52 Total: -10.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.97 -8.12 -46.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003843438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.084 kcal (2) G-P(sol) polarization free energy of solvation -37.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds