Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00288 * 2 1 4 4 C 1.50699 * 109.47058 * 57.43840 * 3 2 1 5 5 H 1.08007 * 120.00205 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00018 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99807 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99793 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47436 * 89.99384 * 8 6 4 10 10 H 1.48501 * 109.46733 * 209.99275 * 8 6 4 11 11 H 1.48503 * 109.47307 * 329.99239 * 8 6 4 12 12 C 1.39673 * 111.00153 * 236.04353 * 2 1 3 13 13 C 1.38911 * 120.07361 * 62.22659 * 12 2 1 14 14 N 1.48026 * 120.03756 * 0.02562 * 13 12 2 15 15 O 1.21795 * 119.99939 * 163.41967 * 14 13 12 16 16 O 1.21794 * 120.00074 * 343.42770 * 14 13 12 17 17 C 1.38109 * 119.92433 * 179.79406 * 13 12 2 18 18 C 1.38287 * 120.07189 * 0.45822 * 17 13 12 19 19 C 1.50705 * 119.92097 * 179.76788 * 18 17 13 20 20 F 1.39898 * 109.47187 * 270.02388 * 19 18 17 21 21 F 1.39898 * 109.46973 * 30.02694 * 19 18 17 22 22 F 1.39906 * 109.46768 * 150.02321 * 19 18 17 23 23 C 1.38278 * 120.15088 * 359.79481 * 18 17 13 24 24 C 1.38101 * 120.07992 * 359.97438 * 23 18 17 25 25 N 1.48015 * 120.04405 * 180.02562 * 24 23 18 26 26 O 1.21803 * 120.00031 * 359.97438 * 25 24 23 27 27 O 1.21793 * 120.00362 * 179.97438 * 25 24 23 28 28 H 1.08999 * 109.47333 * 217.07646 * 1 2 3 29 29 H 1.08997 * 109.47343 * 337.08584 * 1 2 3 30 30 H 1.09007 * 109.47137 * 97.08362 * 1 2 3 31 31 H 1.08997 * 109.47479 * 177.43849 * 3 2 1 32 32 H 1.09002 * 109.46839 * 297.43717 * 3 2 1 33 33 H 0.97001 * 119.99540 * 180.02562 * 7 6 4 34 34 H 1.07995 * 119.95991 * 180.23311 * 17 13 12 35 35 H 1.08008 * 119.96334 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4616 2.1144 1.1975 5 1 0.7973 1.6177 1.8892 6 6 1.8205 3.4287 1.4096 7 7 2.6290 4.0337 0.5670 8 14 1.1581 4.3499 2.8935 9 1 2.0841 4.1715 4.0407 10 1 1.0446 5.7946 2.5691 11 1 -0.1808 3.8160 3.2505 12 6 1.9695 -0.7283 -1.0816 13 6 1.6961 -0.3212 -2.3812 14 7 0.8739 0.8859 -2.6221 15 8 0.8791 1.4176 -3.7178 16 8 0.1923 1.3475 -1.7245 17 6 2.1962 -1.0413 -3.4484 18 6 2.9604 -2.1718 -3.2243 19 6 3.5000 -2.9579 -4.3913 20 9 2.5747 -3.9404 -4.7595 21 9 3.7206 -2.0967 -5.4715 22 9 4.7058 -3.5663 -4.0261 23 6 3.2301 -2.5828 -1.9318 24 6 2.7372 -1.8647 -0.8601 25 7 3.0269 -2.3051 0.5231 26 8 3.7000 -3.3016 0.7166 27 8 2.5922 -1.6710 1.4677 28 1 -0.3634 -0.8199 0.6195 29 1 -0.3634 0.9465 0.4001 30 1 -0.3634 -0.1267 -1.0199 31 1 3.0841 1.3427 0.0459 32 1 1.6836 1.8803 -0.9121 33 1 2.8818 4.9582 0.7165 34 1 1.9871 -0.7231 -4.4590 35 1 3.8271 -3.4664 -1.7602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004299869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = -51.779877 kcal Electronic energy + Delta-G solvation = -32373.833012 eV Core-core repulsion = 27160.240292 eV Total energy + Delta-G solvation = -5213.592721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.076 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.73713 -48.23647 -48.18386 -42.75666 -41.96453 -40.08279 -37.83375 -36.38536 -35.87199 -33.09991 -32.96319 -31.80519 -27.73942 -27.09602 -27.00539 -26.80730 -24.83386 -23.01681 -22.54322 -21.09170 -20.32927 -19.28558 -19.06144 -18.71825 -18.46773 -17.97645 -17.83012 -17.60627 -17.40530 -17.04533 -16.35316 -16.09547 -15.22738 -14.98486 -14.93279 -14.60566 -14.40752 -14.35420 -14.30753 -14.14362 -13.79430 -13.38921 -13.25158 -12.88144 -12.53656 -12.14191 -11.44744 -11.31588 -11.13247 -11.03428 -10.92831 -10.86528 -10.83451 -10.61403 -10.54094 -10.32716 -10.02173 -9.91242 -9.45711 -8.64768 -8.03563 -6.19200 -4.19685 -0.75546 -0.43196 0.64230 0.94331 1.25787 1.40121 1.93817 2.32561 2.95272 3.29161 3.33496 3.34378 3.36359 3.43188 3.75730 3.77245 3.80793 4.07767 4.16102 4.35827 4.60750 4.77635 4.88518 5.08065 5.18958 5.63353 5.94691 6.32280 6.39779 6.49731 6.74596 6.83563 7.33805 7.36606 7.68112 7.79643 7.83864 8.10311 8.82149 9.42524 10.92350 Molecular weight = 349.08amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.004117 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.595402 B = 6798.708462 C = 7920.700417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.501 5.501 3 C 0.185 3.815 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.908 3.092 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.270 1.270 12 C 0.278 3.722 13 C -0.087 4.087 14 N 0.019 4.981 15 O -0.172 6.172 16 O -0.078 6.078 17 C 0.043 3.957 18 C -0.209 4.209 19 C 0.526 3.474 20 F -0.167 7.167 21 F -0.166 7.166 22 F -0.166 7.166 23 C 0.039 3.961 24 C -0.045 4.045 25 N 0.026 4.974 26 O -0.195 6.195 27 O -0.050 6.050 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.037 0.963 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.176 0.824 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -14.277 -10.299 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.224 5.224 3 C 0.064 3.936 4 C -0.540 4.540 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.735 3.265 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.178 3.822 13 C -0.174 4.174 14 N 0.535 4.465 15 O -0.377 6.377 16 O -0.301 6.301 17 C 0.024 3.976 18 C -0.212 4.212 19 C 0.471 3.529 20 F -0.148 7.148 21 F -0.147 7.147 22 F -0.148 7.148 23 C 0.020 3.980 24 C -0.130 4.130 25 N 0.553 4.447 26 O -0.395 6.395 27 O -0.289 6.289 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.193 0.807 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.411 -14.794 -10.638 18.227 hybrid contribution -0.327 1.029 0.010 1.080 sum 0.084 -13.765 -10.629 17.391 Atomic orbital electron populations 1.22911 0.83168 1.04917 0.99475 1.60692 1.10555 1.19764 1.31384 1.20406 0.95250 0.78131 0.99835 1.20885 1.29431 0.95705 1.07973 0.90698 1.24968 0.94993 0.97292 0.96991 1.69944 1.34363 1.12592 1.36458 0.86333 0.79487 0.78599 0.82074 1.20498 1.21245 1.19444 1.19288 0.84748 0.88785 0.89341 1.21702 1.06357 0.93789 0.95547 1.42910 1.01118 1.01443 1.01025 1.94531 1.71032 1.60472 1.11620 1.94724 1.36493 1.63263 1.35598 1.20951 0.86773 0.89026 1.00895 1.19586 1.08234 1.00102 0.93313 1.17630 0.75943 0.77686 0.81646 1.93277 1.65827 1.63449 1.92292 1.93255 1.94650 1.69655 1.57170 1.93253 1.46126 1.83969 1.91403 1.20987 0.90614 0.97424 0.89008 1.20816 1.08346 0.99197 0.84680 1.42941 0.99732 1.00202 1.01783 1.94528 1.38111 1.16231 1.90656 1.94772 1.49879 1.52765 1.31491 0.93134 0.86899 0.94503 0.95471 0.95974 0.92548 0.80667 0.80283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 7.87 60.06 0.47 1.19 16 2 N -0.50 -9.96 2.66 -180.33 -0.48 -10.44 16 3 C 0.18 4.47 4.16 -4.98 -0.02 4.45 16 4 C -0.50 -13.10 7.98 -34.44 -0.27 -13.37 16 5 H 0.07 1.90 7.01 -52.48 -0.37 1.54 16 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 7 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 8 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.28 4.68 4.69 -83.78 -0.39 4.29 16 13 C -0.09 -1.34 6.04 -79.74 -0.48 -1.82 16 14 N 0.02 0.33 3.63 34.06 0.12 0.46 16 15 O -0.17 -3.05 18.55 -29.46 -0.55 -3.60 16 16 O -0.08 -1.55 10.43 -29.46 -0.31 -1.86 16 17 C 0.04 0.50 8.92 -39.61 -0.35 0.14 16 18 C -0.21 -2.11 5.46 -104.59 -0.57 -2.69 16 19 C 0.53 4.64 3.36 36.01 0.12 4.77 16 20 F -0.17 -1.47 17.30 2.25 0.04 -1.44 16 21 F -0.17 -1.52 16.46 2.25 0.04 -1.48 16 22 F -0.17 -1.48 16.46 2.25 0.04 -1.44 16 23 C 0.04 0.43 8.90 -39.62 -0.35 0.08 16 24 C -0.05 -0.67 6.87 -79.75 -0.55 -1.22 16 25 N 0.03 0.44 4.45 34.06 0.15 0.59 16 26 O -0.19 -3.11 18.45 -29.46 -0.54 -3.65 16 27 O -0.05 -0.96 17.10 -29.46 -0.50 -1.46 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 2.22 5.71 -51.93 -0.30 1.93 16 30 H 0.04 0.61 4.98 -52.89 -0.26 0.35 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.58 4.55 -51.74 -0.24 0.34 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.18 1.63 7.24 -52.49 -0.38 1.25 16 35 H 0.18 1.55 7.15 -52.48 -0.38 1.17 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -28.95 320.57 -5.84 -34.79 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: -1.90 Total: -3.62 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.50 Total: -2.66 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.53 Total: -34.20 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.90 Total: -10.57 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.11 Total: -4.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.95 -5.84 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004299869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.989 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds