Wall clock time and date at job start Tue Mar 31 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99989 * 2 1 4 4 C 1.53005 * 109.47013 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46716 * 179.97438 * 4 3 2 6 6 C 1.36805 * 127.15688 * 274.61929 * 5 4 3 7 7 S 1.76200 * 126.39202 * 359.96820 * 6 5 4 8 8 C 1.76201 * 99.99836 * 180.32908 * 7 6 5 9 9 H 1.07999 * 120.00061 * 0.02562 * 8 7 6 10 10 C 1.38605 * 119.99938 * 180.02562 * 8 7 6 11 11 N 1.31672 * 120.00286 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00202 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47139 * 89.99877 * 12 10 8 14 14 H 1.48496 * 109.47603 * 210.00498 * 12 10 8 15 15 H 1.48506 * 109.46962 * 330.00431 * 12 10 8 16 16 N 1.31543 * 107.21689 * 180.26439 * 6 5 4 17 17 N 1.28515 * 110.04056 * 359.74055 * 16 6 5 18 18 C 1.31526 * 109.95415 * 359.97438 * 17 16 6 19 19 C 1.47731 * 126.44618 * 180.02562 * 18 17 16 20 20 C 1.39652 * 120.08687 * 340.76619 * 19 18 17 21 21 C 1.37883 * 119.99718 * 179.97438 * 20 19 18 22 22 C 1.38749 * 120.22150 * 359.97438 * 21 20 19 23 23 C 1.39455 * 120.06803 * 359.97438 * 22 21 20 24 24 C 1.38236 * 119.97573 * 0.02562 * 23 22 21 25 25 O 1.36533 * 108.61466 * 180.02562 * 23 22 21 26 26 C 1.43977 * 105.47730 * 17.30033 * 25 23 22 27 27 O 1.36508 * 131.34880 * 179.97438 * 22 21 20 28 28 H 1.08998 * 109.47309 * 300.00424 * 1 2 3 29 29 H 1.09003 * 109.47116 * 60.00583 * 1 2 3 30 30 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47142 * 59.99476 * 3 2 1 32 32 H 1.09003 * 109.46844 * 299.99409 * 3 2 1 33 33 H 1.08996 * 109.47104 * 59.99501 * 4 3 2 34 34 H 1.08994 * 109.46965 * 299.99643 * 4 3 2 35 35 H 0.96996 * 120.00154 * 180.02562 * 11 10 8 36 36 H 1.07999 * 119.99747 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.88658 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.04315 * 180.02562 * 24 23 22 39 39 H 1.08998 * 110.56794 * 214.23830 * 26 25 23 40 40 H 1.09008 * 110.56351 * 91.38176 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.3875 3.3130 -1.0871 7 16 4.0616 2.9111 -2.7715 8 6 4.6544 4.3736 -3.5552 9 1 5.0676 5.1752 -2.9609 10 6 4.5904 4.4954 -4.9344 11 7 5.0338 5.5881 -5.5202 12 14 3.8764 3.1087 -5.9624 13 1 2.4148 3.3151 -6.1251 14 1 4.5263 3.0969 -7.2975 15 1 4.1203 1.8116 -5.2817 16 7 4.9285 4.4259 -0.6410 17 7 5.0218 4.3874 0.6402 18 6 4.5454 3.2473 1.0909 19 6 4.4751 2.8230 2.5042 20 6 5.2770 3.4459 3.4630 21 6 5.2095 3.0487 4.7816 22 6 4.3461 2.0311 5.1612 23 6 3.5418 1.4057 4.2089 24 6 3.6050 1.7995 2.8854 25 8 2.7916 0.4500 4.8319 26 6 2.8444 0.7736 6.2339 27 8 4.0986 1.4656 6.3787 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8574 0.6435 -0.8890 34 1 3.8567 0.6440 0.8908 35 1 4.9887 5.6735 -6.4853 36 1 5.9500 4.2386 3.1715 37 1 5.8302 3.5319 5.5217 38 1 2.9823 1.3162 2.1470 39 1 2.8361 -0.1343 6.8370 40 1 2.0140 1.4244 6.5082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004400049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:18 Heat of formation + Delta-G solvation = 8.327823 kcal Electronic energy + Delta-G solvation = -27860.392294 eV Core-core repulsion = 23769.848744 eV Total energy + Delta-G solvation = -4090.543550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49324 -42.18352 -38.33885 -37.99430 -36.55782 -35.05299 -32.67503 -31.82777 -30.75242 -29.87066 -28.77405 -26.56712 -26.13588 -25.82909 -24.00265 -23.52055 -23.16056 -21.71382 -20.92847 -18.42152 -18.23927 -17.94859 -17.49960 -17.04959 -16.59926 -16.33998 -16.05636 -15.73974 -15.37199 -15.04209 -14.89761 -14.75373 -14.57880 -14.29480 -13.90841 -13.36875 -13.22861 -13.17463 -13.06083 -12.78904 -12.47921 -11.98901 -11.80853 -11.59256 -11.42832 -11.33731 -11.26193 -11.15179 -11.00595 -10.15960 -10.06298 -10.01970 -9.90502 -9.80483 -9.24377 -9.10430 -8.95693 -8.21242 -7.11503 -6.47059 -4.28525 0.58003 0.96783 1.99860 2.13179 2.46172 2.72555 3.08064 3.12155 3.14653 3.18750 3.22224 3.59723 3.74358 4.02408 4.17863 4.27448 4.32439 4.36974 4.51664 4.60841 4.70396 4.79965 4.85569 4.90982 4.97106 5.01985 5.13753 5.16191 5.20409 5.34173 5.45502 5.52356 5.61667 5.67791 5.80669 5.87425 6.08583 6.14953 6.34450 6.43714 6.79860 6.82817 7.06440 7.78455 8.57750 8.90871 9.18663 10.61829 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003138 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.590668 B = 8921.450298 C =10541.354699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.104 3.896 5 N -0.471 5.471 6 C 0.196 3.804 7 S 0.064 5.936 8 C -0.527 4.527 9 H 0.123 0.877 10 C 0.102 3.898 11 N -0.859 5.859 12 Si 0.841 3.159 13 H -0.262 1.262 14 H -0.264 1.264 15 H -0.239 1.239 16 N -0.283 5.283 17 N -0.259 5.259 18 C 0.177 3.823 19 C 0.020 3.980 20 C -0.070 4.070 21 C -0.093 4.093 22 C 0.031 3.969 23 C 0.038 3.962 24 C -0.110 4.110 25 O -0.307 6.307 26 C 0.213 3.787 27 O -0.308 6.308 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.275 0.725 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 -12.544 19.506 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.037 4.037 4 C -0.020 4.020 5 N -0.169 5.169 6 C -0.174 4.174 7 S 0.296 5.704 8 C -0.675 4.675 9 H 0.141 0.859 10 C -0.109 4.109 11 N -0.494 5.494 12 Si 0.665 3.335 13 H -0.187 1.187 14 H -0.188 1.188 15 H -0.163 1.163 16 N -0.128 5.128 17 N -0.101 5.101 18 C -0.088 4.088 19 C 0.016 3.984 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.014 4.014 23 C -0.007 4.007 24 C -0.130 4.130 25 O -0.223 6.223 26 C 0.101 3.899 27 O -0.224 6.224 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.287 -12.366 18.821 23.669 hybrid contribution -0.766 -0.546 0.033 0.941 sum -8.053 -12.912 18.853 24.228 Atomic orbital electron populations 1.22788 0.80157 1.02988 1.00444 1.87791 1.20404 1.26562 1.95592 1.22872 0.92871 0.85736 1.02263 1.21710 0.92370 0.81319 1.06598 1.46175 1.49536 1.15625 1.05555 1.27635 1.02088 0.90791 0.96888 1.82869 1.74638 1.27626 0.85221 1.22526 1.48000 1.01742 0.95240 0.85922 1.24652 0.93963 0.95756 0.96506 1.69922 1.42808 1.25622 1.10999 0.87024 0.80799 0.83429 0.82200 1.18672 1.18809 1.16317 1.74909 1.19344 1.17432 1.01153 1.74360 1.16348 1.14955 1.04425 1.22332 1.06547 0.91806 0.88098 1.17026 0.97168 0.96174 0.88001 1.21017 0.98235 0.99571 0.90208 1.20008 0.99577 0.95007 0.96590 1.19949 1.00217 0.97402 0.83805 1.19424 0.95831 0.91376 0.94029 1.20361 1.01303 0.98337 0.93030 1.87387 1.68850 1.46502 1.19568 1.25626 0.85605 0.97266 0.81394 1.87358 1.39434 1.65872 1.29780 0.93945 0.93498 0.89237 0.92442 0.91073 0.87188 0.87436 0.91404 0.82899 0.83979 0.83870 0.85145 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.64 10.70 -35.23 -0.38 -5.02 16 3 C 0.04 0.52 5.65 37.16 0.21 0.73 16 4 C 0.10 1.44 5.49 -4.04 -0.02 1.41 16 5 N -0.47 -8.35 2.83 -114.03 -0.32 -8.68 16 6 C 0.20 4.29 8.06 -87.87 -0.71 3.58 16 7 S 0.06 1.45 19.46 -107.50 -2.09 -0.64 16 8 C -0.53 -14.60 9.91 30.87 0.31 -14.30 16 9 H 0.12 3.81 7.15 -52.49 -0.38 3.44 16 10 C 0.10 2.79 5.50 -17.48 -0.10 2.70 16 11 N -0.86 -24.79 13.97 55.48 0.78 -24.02 16 12 Si 0.84 19.03 27.73 -169.99 -4.71 14.32 16 13 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.24 -5.09 6.74 56.52 0.38 -4.71 16 16 N -0.28 -6.87 11.02 30.77 0.34 -6.53 16 17 N -0.26 -5.52 12.02 32.56 0.39 -5.13 16 18 C 0.18 3.16 7.68 -153.82 -1.18 1.98 16 19 C 0.02 0.28 5.86 -104.97 -0.62 -0.34 16 20 C -0.07 -0.86 9.69 -39.18 -0.38 -1.24 16 21 C -0.09 -0.98 10.04 -39.52 -0.40 -1.38 16 22 C 0.03 0.36 7.15 -38.94 -0.28 0.08 16 23 C 0.04 0.46 7.14 -39.13 -0.28 0.18 16 24 C -0.11 -1.40 8.62 -39.06 -0.34 -1.73 16 25 O -0.31 -3.37 11.40 -45.80 -0.52 -3.89 16 26 C 0.21 1.62 8.89 101.05 0.90 2.51 16 27 O -0.31 -3.21 11.40 -45.71 -0.52 -3.73 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.70 6.99 -51.93 -0.36 0.34 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.11 1.50 8.00 -51.93 -0.42 1.08 16 34 H 0.11 1.30 5.76 -51.93 -0.30 1.00 16 35 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.15 1.81 7.97 -52.49 -0.42 1.39 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.14 1.74 3.40 -52.48 -0.18 1.57 16 39 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -32.92 356.70 -7.60 -40.53 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.17 Total: 1.82 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.77 Total: -4.40 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 1.18 Total: -44.35 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.42 Total: -12.64 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.09 Total: -0.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.92 -7.60 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004400049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.854 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds