Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00385 * 2 1 4 4 C 1.34776 * 119.99881 * 180.02562 * 2 1 3 5 5 O 1.21621 * 120.00135 * 4.19173 * 4 2 1 6 6 C 1.47283 * 120.00041 * 184.19137 * 4 2 1 7 7 C 1.37958 * 126.80936 * 323.80797 * 6 4 2 8 8 N 1.34157 * 107.89337 * 179.73961 * 7 6 4 9 9 C 1.46505 * 125.16072 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47144 * 124.99617 * 9 8 7 11 11 H 1.08000 * 120.00274 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00344 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99277 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 120.00425 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47021 * 60.00029 * 14 12 10 16 16 H 1.48502 * 109.47335 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47335 * 300.00065 * 14 12 10 18 18 N 1.39770 * 109.68038 * 0.02562 * 8 7 6 19 19 C 1.31385 * 109.07382 * 0.02562 * 18 8 7 20 20 C 1.48245 * 126.51335 * 180.02562 * 19 18 8 21 21 C 1.40482 * 119.72365 * 139.29201 * 20 19 18 22 22 C 1.35782 * 120.86369 * 179.74964 * 21 20 19 23 23 C 1.40662 * 119.98747 * 0.51976 * 22 21 20 24 24 C 1.40511 * 121.06654 * 179.74322 * 23 22 21 25 25 C 1.36122 * 119.71158 * 180.02562 * 24 23 22 26 26 C 1.39364 * 121.00382 * 0.02562 * 25 24 23 27 27 C 1.36084 * 120.96056 * 359.96968 * 26 25 24 28 28 C 1.40629 * 119.66480 * 0.02853 * 27 26 25 29 29 C 1.38259 * 119.72190 * 319.56241 * 20 19 18 30 30 H 1.08998 * 109.47099 * 270.00252 * 1 2 3 31 31 H 1.09006 * 109.47015 * 29.99675 * 1 2 3 32 32 H 1.09001 * 109.47513 * 150.00005 * 1 2 3 33 33 H 1.09002 * 109.47204 * 264.92204 * 3 2 1 34 34 H 1.09003 * 109.46816 * 24.91998 * 3 2 1 35 35 H 1.08997 * 109.47511 * 144.92306 * 3 2 1 36 36 H 1.08001 * 126.05223 * 359.76033 * 7 6 4 37 37 H 1.08995 * 109.47083 * 244.99683 * 9 8 7 38 38 H 1.09002 * 109.47019 * 5.00207 * 9 8 7 39 39 H 0.97009 * 119.99626 * 179.97438 * 13 12 10 40 40 H 1.08002 * 119.56543 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.00711 * 180.28194 * 22 21 20 42 42 H 1.08004 * 120.14209 * 0.04728 * 24 23 22 43 43 H 1.08003 * 119.49455 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.51958 * 179.97438 * 26 25 24 45 45 H 1.08009 * 120.16743 * 179.97438 * 27 26 25 46 46 H 1.07987 * 120.26623 * 359.96152 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5331 -2.2190 -0.0780 6 6 3.6087 -1.1690 0.0927 7 6 4.4739 -0.2551 -0.4725 8 7 5.7243 -0.6136 -0.1442 9 6 6.9395 0.0983 -0.5476 10 6 7.7445 0.4514 0.6764 11 1 7.3870 0.1730 1.6568 12 6 8.9381 1.1291 0.5448 13 7 9.3737 1.4677 -0.6490 14 14 9.9363 1.5661 2.0620 15 1 10.3072 0.3233 2.7853 16 1 11.1680 2.2879 1.6531 17 1 9.1270 2.4350 2.9537 18 7 5.6917 -1.7694 0.6410 19 6 4.4423 -2.1396 0.8086 20 6 3.9659 -3.3143 1.5772 21 6 2.8233 -3.2004 2.3865 22 6 2.3637 -4.2627 3.0963 23 6 3.0401 -5.4946 3.0355 24 6 2.5875 -6.6071 3.7648 25 6 3.2636 -7.7859 3.6860 26 6 4.4020 -7.9088 2.8915 27 6 4.8701 -6.8536 2.1709 28 6 4.1981 -5.6195 2.2271 29 6 4.6531 -4.5113 1.4959 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.4580 1.5378 -1.0236 34 1 1.5721 2.0493 0.4330 35 1 3.1075 1.1628 0.5905 36 1 4.1941 0.5981 -1.0726 37 1 7.5339 -0.5393 -1.2019 38 1 6.6669 1.0104 -1.0786 39 1 10.2133 1.9448 -0.7416 40 1 2.3015 -2.2564 2.4419 41 1 1.4812 -4.1609 3.7106 42 1 1.7069 -6.5273 4.3850 43 1 2.9124 -8.6389 4.2477 44 1 4.9202 -8.8554 2.8469 45 1 5.7538 -6.9630 1.5597 46 1 5.5331 -4.5926 0.8753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = 86.300656 kcal Electronic energy + Delta-G solvation = -29620.911573 eV Core-core repulsion = 25669.971417 eV Total energy + Delta-G solvation = -3950.940156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.80069 -39.99100 -38.91470 -36.46178 -35.27072 -33.82339 -32.73607 -31.90891 -30.54870 -30.02244 -28.99115 -27.78183 -27.15785 -25.86184 -24.09477 -23.07205 -22.74868 -21.82184 -21.21311 -19.94748 -19.03344 -17.28148 -16.97812 -16.76601 -16.39465 -16.22799 -15.78665 -15.45878 -15.23089 -14.66295 -14.44758 -14.37168 -13.90343 -13.71702 -13.47775 -13.26806 -13.20524 -13.02024 -12.88415 -12.64480 -12.52956 -12.35262 -12.15544 -12.00743 -11.80347 -11.76408 -11.28246 -11.08313 -10.95868 -10.90656 -10.74473 -10.37844 -10.31223 -9.95147 -9.76468 -9.57447 -9.02653 -8.73347 -8.58893 -8.32211 -7.96085 -7.58389 -6.36788 -4.42898 0.62102 1.06912 2.09083 2.16933 2.61937 3.00919 3.19022 3.23061 3.24116 3.25683 3.32353 3.66176 4.21686 4.28974 4.61544 4.71638 4.89347 4.92354 4.99701 5.00242 5.08029 5.15654 5.18841 5.28194 5.31913 5.41242 5.47950 5.50111 5.55081 5.59972 5.70542 5.76443 5.81233 5.88761 5.93616 6.05390 6.14762 6.32395 6.34269 6.50693 6.52826 6.60433 6.66541 6.79561 6.84324 6.93545 7.00693 7.13702 7.47672 7.51668 7.69472 7.71514 8.28168 8.48790 8.64400 9.23892 10.72120 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.007747 B = 0.003618 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.500710 B = 7737.063435 C =10580.215895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.625 5.625 3 C 0.074 3.926 4 C 0.599 3.401 5 O -0.540 6.540 6 C -0.306 4.306 7 C 0.093 3.907 8 N -0.311 5.311 9 C 0.251 3.749 10 C -0.534 4.534 11 H 0.070 0.930 12 C 0.066 3.934 13 N -0.893 5.893 14 Si 0.909 3.091 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.256 5.256 19 C 0.127 3.873 20 C 0.014 3.986 21 C -0.067 4.067 22 C -0.114 4.114 23 C -0.047 4.047 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.098 4.098 28 C -0.051 4.051 29 C -0.080 4.080 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.178 0.822 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.269 0.731 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -7.174 4.000 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.360 5.360 3 C -0.070 4.070 4 C 0.389 3.611 5 O -0.417 6.417 6 C -0.322 4.322 7 C -0.060 4.060 8 N -0.088 5.088 9 C 0.134 3.866 10 C -0.572 4.572 11 H 0.088 0.912 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.736 3.264 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.200 1.200 18 N -0.077 5.077 19 C -0.040 4.040 20 C 0.012 3.988 21 C -0.086 4.086 22 C -0.132 4.132 23 C -0.047 4.047 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.116 4.116 28 C -0.051 4.051 29 C -0.099 4.099 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.195 0.805 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.144 0.856 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.066 -7.770 4.043 16.570 hybrid contribution -0.125 0.882 0.338 0.953 sum -14.191 -6.887 4.381 16.371 Atomic orbital electron populations 1.21563 0.79475 1.02854 1.01463 1.47591 1.06622 1.06418 1.75349 1.22026 0.98170 0.85021 1.01743 1.17339 0.85881 0.82797 0.75038 1.90751 1.69924 1.30910 1.50164 1.20848 0.92703 1.02298 1.16383 1.23092 0.85365 0.98488 0.99089 1.49250 1.07189 1.18336 1.34026 1.19924 0.78186 0.91088 0.97380 1.21151 1.05698 1.37710 0.92667 0.91168 1.24926 0.96989 0.95047 0.96837 1.69902 1.21992 1.39082 1.22095 0.86366 0.79074 0.78847 0.82161 1.19775 1.20954 1.19952 1.77469 1.17789 1.00195 1.12233 1.21626 0.89788 0.94495 0.98101 1.17625 0.94969 0.90450 0.95791 1.20657 0.94459 0.98929 0.94523 1.20772 0.99884 0.91901 1.00662 1.18104 0.95095 0.94295 0.97242 1.20988 0.99848 0.92538 0.99204 1.20791 0.96018 0.97657 0.99481 1.20775 0.97064 0.98791 0.97807 1.21073 0.99417 0.92045 0.99101 1.17985 0.95391 0.94116 0.97625 1.21350 0.99087 0.91088 0.98421 0.93112 0.91619 0.90554 0.92642 0.91151 0.90074 0.80461 0.93161 0.92335 0.92096 0.86358 0.85613 0.85843 0.86349 0.86247 0.85559 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.45 59.84 0.63 1.54 16 2 N -0.63 -8.16 3.27 -190.86 -0.62 -8.79 16 3 C 0.07 0.77 9.02 59.85 0.54 1.31 16 4 C 0.60 10.09 6.52 -12.58 -0.08 10.01 16 5 O -0.54 -10.43 15.24 5.26 0.08 -10.35 16 6 C -0.31 -5.57 5.54 -102.95 -0.57 -6.14 16 7 C 0.09 1.62 9.10 -16.64 -0.15 1.47 16 8 N -0.31 -6.61 3.62 -62.04 -0.22 -6.84 16 9 C 0.25 5.89 6.21 -5.19 -0.03 5.85 16 10 C -0.53 -13.99 9.21 -34.44 -0.32 -14.31 16 11 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.11 13.29 55.43 0.74 -23.37 16 14 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.26 -5.67 12.30 34.57 0.43 -5.24 16 19 C 0.13 2.53 6.86 -80.57 -0.55 1.98 16 20 C 0.01 0.25 5.62 -104.93 -0.59 -0.34 16 21 C -0.07 -1.09 8.19 -39.62 -0.32 -1.41 16 22 C -0.11 -1.63 9.73 -39.55 -0.38 -2.01 16 23 C -0.05 -0.68 5.74 -106.77 -0.61 -1.29 16 24 C -0.11 -1.27 9.76 -39.49 -0.39 -1.65 16 25 C -0.12 -1.30 9.95 -39.92 -0.40 -1.69 16 26 C -0.13 -1.40 9.95 -39.94 -0.40 -1.80 16 27 C -0.10 -1.27 9.77 -39.45 -0.39 -1.66 16 28 C -0.05 -0.78 5.74 -106.85 -0.61 -1.39 16 29 C -0.08 -1.36 9.51 -38.78 -0.37 -1.73 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.08 0.88 7.37 -51.93 -0.38 0.50 16 33 H 0.06 0.51 7.33 -51.93 -0.38 0.13 16 34 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 35 H 0.08 0.99 5.86 -51.93 -0.30 0.68 16 36 H 0.18 2.42 6.21 -52.49 -0.33 2.10 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.12 1.90 7.21 -52.49 -0.38 1.52 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 46 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -31.83 389.77 -9.81 -41.63 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.95 Total: 3.17 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -5.10 Total: -11.63 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.31 Total: -44.24 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.83 -9.81 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.934 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds