Wall clock time and date at job start Tue Mar 31 2020 06:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48494 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47212 * 300.00291 * 3 2 1 6 6 H 1.48503 * 109.46852 * 60.00370 * 3 2 1 7 7 C 1.37871 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00175 * 185.79062 * 7 2 1 9 9 C 1.50704 * 119.99967 * 5.78165 * 7 2 1 10 10 H 1.08999 * 109.46818 * 24.95156 * 9 7 2 11 11 C 1.52994 * 109.47484 * 264.94302 * 9 7 2 12 12 O 1.42902 * 109.47397 * 304.53504 * 11 9 7 13 13 C 1.42897 * 114.00124 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.48172 * 54.99969 * 13 12 11 15 15 C 1.53094 * 109.47976 * 175.02162 * 13 12 11 16 16 C 1.53171 * 109.16296 * 177.58809 * 15 13 12 17 17 C 1.53174 * 109.04158 * 303.02117 * 16 15 13 18 18 C 1.53102 * 109.16224 * 56.97622 * 17 16 15 19 19 O 1.42894 * 109.42496 * 302.40203 * 18 17 16 20 20 N 1.46506 * 109.46825 * 144.94398 * 9 7 2 21 21 C 1.34781 * 119.99920 * 275.00221 * 20 9 7 22 22 O 1.21504 * 119.99931 * 359.97438 * 21 20 9 23 23 O 1.34632 * 119.99695 * 180.02562 * 21 20 9 24 24 C 1.45201 * 116.99720 * 179.97438 * 23 21 20 25 25 C 1.50700 * 109.47293 * 180.02562 * 24 23 21 26 26 C 1.38236 * 120.00007 * 269.73283 * 25 24 23 27 27 C 1.38237 * 119.99992 * 179.80712 * 26 25 24 28 28 C 1.38240 * 120.00047 * 0.39772 * 27 26 25 29 29 C 1.38234 * 119.99694 * 359.85156 * 28 27 26 30 30 C 1.38237 * 120.00339 * 359.96154 * 29 28 27 31 31 H 0.97008 * 120.00219 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.46748 * 64.53209 * 11 9 7 33 33 H 1.09001 * 109.47322 * 184.53580 * 11 9 7 34 34 H 1.08999 * 109.52224 * 297.50015 * 15 13 12 35 35 H 1.09001 * 109.52039 * 57.68246 * 15 13 12 36 36 H 1.09001 * 109.54241 * 62.88731 * 16 15 13 37 37 H 1.08997 * 109.54614 * 183.14973 * 16 15 13 38 38 H 1.09000 * 109.52594 * 176.88570 * 17 16 15 39 39 H 1.09007 * 109.52057 * 297.01574 * 17 16 15 40 40 H 1.09001 * 109.47417 * 62.37974 * 18 17 16 41 41 H 1.09001 * 109.48026 * 182.39909 * 18 17 16 42 42 H 0.96996 * 119.99843 * 95.00031 * 20 9 7 43 43 H 1.09003 * 109.47548 * 300.00219 * 24 23 21 44 44 H 1.09009 * 109.47011 * 60.00354 * 24 23 21 45 45 H 1.07999 * 120.00288 * 359.97438 * 26 25 24 46 46 H 1.08005 * 120.00309 * 180.22401 * 27 26 25 47 47 H 1.07999 * 120.00007 * 179.83863 * 28 27 26 48 48 H 1.07997 * 120.00043 * 179.97438 * 29 28 27 49 49 H 1.07995 * 120.00628 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0803 -1.1964 0.0938 9 6 1.2567 -2.4958 -0.1326 10 1 0.3094 -2.3204 -0.6425 11 6 0.9881 -3.0731 1.2585 12 8 2.2226 -3.2042 1.9664 13 6 2.0829 -3.7383 3.2845 14 1 1.5570 -4.6917 3.2365 15 6 3.4690 -3.9501 3.8990 16 6 3.3099 -4.4655 5.3326 17 6 2.4661 -3.4676 6.1317 18 6 1.1187 -3.2743 5.4308 19 8 1.3393 -2.8240 4.0928 20 7 2.0604 -3.4440 -0.9080 21 6 2.0095 -3.4271 -2.2548 22 8 1.2967 -2.6257 -2.8257 23 8 2.7477 -4.2988 -2.9673 24 6 2.6427 -4.2236 -4.4135 25 6 3.5325 -5.2680 -5.0368 26 6 4.8427 -4.9606 -5.3526 27 6 5.6601 -5.9198 -5.9206 28 6 5.1649 -7.1841 -6.1805 29 6 3.8532 -7.4899 -5.8695 30 6 3.0369 -6.5318 -5.2979 31 1 -0.4851 0.8401 0.0004 32 1 0.3240 -2.4051 1.8071 33 1 0.5193 -4.0523 1.1613 34 1 4.0215 -4.6808 3.3083 35 1 4.0110 -3.0045 3.9099 36 1 2.8118 -5.4349 5.3184 37 1 4.2918 -4.5654 5.7953 38 1 2.3014 -3.8533 7.1378 39 1 2.9884 -2.5125 6.1886 40 1 0.5801 -4.2218 5.4112 41 1 0.5306 -2.5330 5.9718 42 1 2.6292 -4.0840 -0.4522 43 1 1.6097 -4.4015 -4.7127 44 1 2.9530 -3.2341 -4.7494 45 1 5.2286 -3.9719 -5.1529 46 1 6.6849 -5.6808 -6.1640 47 1 5.8027 -7.9327 -6.6268 48 1 3.4661 -8.4774 -6.0729 49 1 2.0122 -6.7708 -5.0545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004571309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:29 Heat of formation + Delta-G solvation = -155.532520 kcal Electronic energy + Delta-G solvation = -30669.380259 eV Core-core repulsion = 26368.351759 eV Total energy + Delta-G solvation = -4301.028500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 349.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.76544 -39.30854 -38.95251 -36.83271 -35.68621 -34.00000 -33.53772 -32.35661 -31.87236 -30.99983 -30.29544 -28.34512 -26.20561 -25.07983 -24.27087 -22.96526 -22.66987 -21.87404 -21.10569 -20.24562 -19.85670 -18.01011 -17.05287 -17.01254 -16.39275 -16.26343 -15.94327 -15.83921 -15.33474 -15.03264 -14.73544 -14.67753 -14.60023 -14.14546 -13.75678 -13.51359 -13.42648 -13.12086 -13.00876 -12.79628 -12.65816 -12.54099 -12.35075 -12.08114 -11.63873 -11.48180 -11.15531 -11.10443 -11.05673 -11.03771 -10.88078 -10.79136 -10.42287 -10.34047 -10.08496 -9.89583 -9.65909 -9.46540 -9.23958 -9.01453 -8.98930 -8.91199 -8.39229 -7.88811 -5.98795 -4.01738 1.12575 1.30968 3.04852 3.38647 3.44847 3.50096 3.79174 3.84810 3.89398 4.38591 4.52085 4.68656 4.76338 4.80835 4.86007 4.88925 4.98849 5.01984 5.19641 5.22395 5.27513 5.29288 5.38598 5.45326 5.52511 5.60543 5.63595 5.67235 5.71720 5.81821 5.88906 5.92039 5.95724 6.02286 6.08987 6.14196 6.33371 6.36645 6.38435 6.54135 6.54912 6.82536 6.87573 6.95439 7.35044 7.52907 7.67975 7.92037 7.97981 8.30680 8.54028 9.06032 9.42088 9.64515 11.08693 Molecular weight = 349.18amu Principal moments of inertia in cm(-1) A = 0.008799 B = 0.002793 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.381324 B =10021.137504 C =12179.004543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.274 3.726 10 H 0.092 0.908 11 C 0.071 3.929 12 O -0.347 6.347 13 C 0.253 3.747 14 H 0.040 0.960 15 C -0.140 4.140 16 C -0.119 4.119 17 C -0.159 4.159 18 C 0.071 3.929 19 O -0.395 6.395 20 N -0.691 5.691 21 C 0.637 3.363 22 O -0.567 6.567 23 O -0.380 6.380 24 C 0.128 3.872 25 C -0.088 4.088 26 C -0.095 4.095 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.126 4.126 30 C -0.096 4.096 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.388 0.612 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -15.102 0.663 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.174 3.826 10 H 0.109 0.891 11 C -0.006 4.006 12 O -0.265 6.265 13 C 0.157 3.843 14 H 0.058 0.942 15 C -0.178 4.178 16 C -0.156 4.156 17 C -0.197 4.197 18 C -0.006 4.006 19 O -0.316 6.316 20 N -0.348 5.348 21 C 0.389 3.611 22 O -0.456 6.456 23 O -0.296 6.296 24 C 0.053 3.947 25 C -0.089 4.089 26 C -0.113 4.113 27 C -0.143 4.143 28 C -0.134 4.134 29 C -0.144 4.144 30 C -0.114 4.114 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.221 0.779 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.609 -14.342 0.164 15.792 hybrid contribution 0.544 0.401 0.422 0.797 sum 7.153 -13.941 0.586 15.680 Atomic orbital electron populations 1.69894 1.06015 1.26976 1.49541 1.24915 0.94820 0.99310 0.94118 0.86458 0.80207 0.83453 0.77349 1.19762 1.21002 1.21063 1.21149 0.93938 0.89641 1.49639 0.92104 1.19093 0.93486 0.85695 0.84280 0.89073 1.23089 0.85492 0.97174 0.94818 1.88118 1.31380 1.85135 1.21898 1.22847 0.91033 0.88727 0.81720 0.94239 1.21995 0.97213 1.03149 0.95473 1.21572 1.00471 0.98486 0.95088 1.22245 0.97601 1.00642 0.99206 1.22428 0.95696 0.99703 0.82816 1.87969 1.74755 1.46626 1.22247 1.45650 1.48508 1.39092 1.01556 1.18268 0.79486 0.79656 0.83733 1.90978 1.43830 1.40720 1.70035 1.86267 1.65709 1.57803 1.19811 1.21511 0.98840 0.97541 0.76828 1.19687 0.94759 0.94876 0.99530 1.21167 0.92888 0.99905 0.97314 1.21151 0.99796 0.93578 0.99798 1.21188 0.95717 0.96717 0.99807 1.21133 0.94186 0.99308 0.99784 1.21132 1.00204 0.92403 0.97664 0.92746 0.90783 0.96365 0.90416 0.90028 0.91936 0.91190 0.91067 0.90786 0.93623 0.88966 0.77937 0.90714 0.90555 0.85624 0.85905 0.86126 0.85950 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 12.85 55.43 0.71 -25.49 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.90 22.58 29.54 -169.99 -5.02 17.55 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.51 -14.27 8.13 -34.44 -0.28 -14.55 16 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.27 6.95 2.44 -69.08 -0.17 6.78 16 10 H 0.09 2.63 6.82 -51.93 -0.35 2.28 16 11 C 0.07 1.59 5.53 37.15 0.21 1.80 16 12 O -0.35 -7.27 9.47 -59.04 -0.56 -7.83 16 13 C 0.25 4.30 3.20 37.21 0.12 4.42 16 14 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.14 -1.94 5.79 -26.59 -0.15 -2.09 16 16 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 17 C -0.16 -1.70 6.14 -26.59 -0.16 -1.87 16 18 C 0.07 0.90 6.84 37.21 0.25 1.16 16 19 O -0.39 -7.14 10.03 -59.04 -0.59 -7.73 16 20 N -0.69 -15.49 5.05 -59.86 -0.30 -15.79 16 21 C 0.64 14.61 8.71 54.06 0.47 15.08 16 22 O -0.57 -15.10 15.79 -19.27 -0.30 -15.41 16 23 O -0.38 -7.30 10.25 -40.30 -0.41 -7.71 16 24 C 0.13 2.05 5.60 36.01 0.20 2.25 16 25 C -0.09 -1.19 5.52 -104.62 -0.58 -1.77 16 26 C -0.09 -1.16 9.70 -39.58 -0.38 -1.54 16 27 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 28 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 29 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 30 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.83 7.75 -51.93 -0.40 1.42 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.39 7.68 8.48 -40.82 -0.35 7.33 16 43 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 44 H 0.08 1.23 8.08 -51.92 -0.42 0.82 16 45 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -34.06 410.26 -10.44 -44.50 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.83 Total: 7.88 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.31 Total: 3.84 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.41 Total: -41.28 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.87 Total: -38.68 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.06 -10.44 -44.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004571309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.033 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds