Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30201 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48498 * 109.46888 * 270.00233 * 3 2 1 5 5 H 1.48501 * 109.46930 * 30.00106 * 3 2 1 6 6 H 1.48496 * 109.47158 * 149.99814 * 3 2 1 7 7 C 1.40917 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.46326 * 119.99790 * 0.02562 * 7 2 1 10 10 O 1.21857 * 120.00357 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99436 * 180.02562 * 9 7 2 12 12 N 1.29001 * 119.99849 * 179.97438 * 11 9 7 13 13 C 1.31865 * 120.00348 * 179.97438 * 12 11 9 14 14 C 1.41381 * 120.00372 * 179.97438 * 13 12 11 15 15 C 1.40694 * 120.31840 * 180.02562 * 14 13 12 16 16 C 1.36288 * 119.97741 * 179.97438 * 15 14 13 17 17 N 1.48016 * 119.67558 * 180.02562 * 16 15 14 18 18 O 1.31703 * 120.00311 * 359.97438 * 17 16 15 19 19 O 1.31694 * 119.99895 * 179.97438 * 17 16 15 20 20 C 1.39200 * 120.64326 * 359.71463 * 16 15 14 21 21 C 1.37893 * 120.64557 * 0.57087 * 20 16 15 22 22 C 1.39050 * 119.99645 * 359.43496 * 21 20 16 23 23 N 1.38134 * 120.31691 * 180.30586 * 22 21 20 24 24 C 1.47016 * 111.00308 * 63.63258 * 23 22 21 25 25 C 1.53100 * 109.25659 * 177.61199 * 24 23 22 26 26 O 1.43010 * 109.26282 * 56.84869 * 25 24 23 27 27 C 1.43019 * 113.73892 * 301.32878 * 26 25 24 28 28 C 1.47016 * 110.99665 * 299.99806 * 23 22 21 29 29 H 0.96996 * 120.00326 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00726 * 359.97438 * 11 9 7 31 31 H 1.08001 * 120.00095 * 359.97438 * 13 12 11 32 32 H 1.08001 * 120.00989 * 359.97438 * 15 14 13 33 33 H 1.07991 * 119.67668 * 180.28519 * 20 16 15 34 34 H 1.08002 * 120.00440 * 179.71791 * 21 20 16 35 35 H 1.08998 * 109.50644 * 297.54607 * 24 23 22 36 36 H 1.08996 * 109.50186 * 57.67543 * 24 23 22 37 37 H 1.09001 * 109.50243 * 296.91008 * 25 24 23 38 38 H 1.09006 * 109.50151 * 176.78687 * 25 24 23 39 39 H 1.08995 * 109.50495 * 298.73726 * 27 26 25 40 40 H 1.08997 * 109.54684 * 178.62223 * 27 26 25 41 41 H 1.08999 * 109.50834 * 302.32603 * 28 23 22 42 42 H 1.08997 * 109.50831 * 62.45737 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3020 0.0000 0.0000 3 14 2.2359 1.6178 0.0000 4 1 2.4833 2.0465 -1.4001 5 1 1.4333 2.6527 0.7001 6 1 3.5334 1.4403 0.7001 7 6 2.0066 -1.2203 0.0005 8 1 3.0867 -1.2202 0.0001 9 6 1.2750 -2.4876 0.0005 10 8 0.0564 -2.4877 0.0005 11 7 1.9490 -3.6547 0.0016 12 7 1.3041 -4.7719 0.0021 13 6 1.9635 -5.9139 0.0026 14 6 1.2566 -7.1384 0.0037 15 6 1.9534 -8.3607 0.0048 16 6 1.2651 -9.5369 0.0064 17 7 2.0049 -10.8189 0.0081 18 8 3.3219 -10.8193 0.0076 19 8 1.3462 -11.9593 0.0101 20 6 -0.1269 -9.5444 0.0129 21 6 -0.8361 -8.3619 0.0060 22 6 -0.1610 -7.1463 0.0044 23 7 -0.8649 -5.9577 0.0039 24 6 -1.6568 -5.8138 1.2341 25 6 -2.3719 -4.4602 1.2189 26 8 -3.1785 -4.3659 0.0417 27 6 -2.4392 -4.5011 -1.1751 28 6 -1.7247 -5.8552 -1.1841 29 1 -0.4850 0.8400 0.0004 30 1 2.9190 -3.6547 0.0020 31 1 3.0435 -5.9139 0.0022 32 1 3.0334 -8.3668 0.0044 33 1 -0.6565 -10.4855 0.0187 34 1 -1.9160 -8.3798 0.0066 35 1 -2.3944 -6.6145 1.2879 36 1 -0.9969 -5.8672 2.1000 37 1 -1.6334 -3.6585 1.2193 38 1 -3.0051 -4.3731 2.1019 39 1 -1.7027 -3.7006 -1.2443 40 1 -3.1204 -4.4434 -2.0240 41 1 -1.1145 -5.9387 -2.0834 42 1 -2.4634 -6.6565 -1.1691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004906949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = 39.799135 kcal Electronic energy + Delta-G solvation = -31046.205708 eV Core-core repulsion = 26611.992648 eV Total energy + Delta-G solvation = -4434.213060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.131 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.82263 -39.28551 -38.99221 -37.99731 -35.82906 -35.44925 -34.46631 -33.10243 -32.66179 -31.03173 -30.90039 -29.57664 -27.54704 -26.77788 -25.19166 -24.04399 -23.74600 -22.65869 -21.06742 -20.19168 -20.07805 -18.82475 -18.11876 -17.45684 -17.33338 -16.74370 -16.02910 -15.80990 -15.74183 -15.22261 -14.95167 -14.91138 -14.78575 -14.62282 -14.32274 -14.10059 -13.65072 -13.38509 -13.04699 -12.98426 -12.93349 -12.13752 -11.90891 -11.66509 -11.62487 -11.40647 -11.37002 -11.19554 -11.17208 -10.94507 -10.87755 -10.72772 -10.56107 -10.22908 -9.75274 -9.70261 -9.42453 -9.27585 -9.18035 -8.16982 -8.10847 -7.29618 -6.64864 -5.11101 -0.72242 0.62426 1.03224 1.10415 2.49841 2.92205 2.99149 3.02297 3.48158 3.60599 3.68721 3.98792 4.25077 4.25736 4.30210 4.50051 4.69091 4.79677 5.05257 5.10161 5.13808 5.27856 5.35216 5.35497 5.43026 5.50604 5.52159 5.56876 5.70701 5.72798 5.78645 5.83056 6.08229 6.19853 6.23457 6.43412 6.45009 6.58590 6.74067 6.96069 7.00717 7.31457 7.35625 7.55546 7.76465 8.51767 8.55016 8.96907 10.13805 10.28356 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.003172 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.326129 B = 8824.975613 C =10498.560562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.089 3.911 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.538 3.462 10 O -0.518 6.518 11 N -0.513 5.513 12 N -0.086 5.086 13 C -0.095 4.095 14 C 0.041 3.959 15 C -0.059 4.059 16 C 0.002 3.998 17 N -0.013 5.013 18 O -0.178 6.178 19 O -0.182 6.182 20 C -0.070 4.070 21 C -0.143 4.143 22 C 0.152 3.848 23 N -0.467 5.467 24 C 0.037 3.963 25 C 0.061 3.939 26 O -0.387 6.387 27 C 0.063 3.937 28 C 0.034 3.966 29 H 0.277 0.723 30 H 0.363 0.637 31 H 0.108 0.892 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -9.657 0.039 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.346 3.654 10 O -0.394 6.394 11 N -0.258 5.258 12 N 0.088 4.912 13 C -0.290 4.290 14 C 0.037 3.963 15 C -0.082 4.082 16 C -0.084 4.084 17 N 0.465 4.535 18 O -0.371 6.371 19 O -0.375 6.375 20 C -0.091 4.091 21 C -0.164 4.164 22 C 0.052 3.948 23 N -0.188 5.188 24 C -0.089 4.089 25 C -0.015 4.015 26 O -0.306 6.306 27 C -0.014 4.014 28 C -0.092 4.092 29 H 0.089 0.911 30 H 0.200 0.800 31 H 0.125 0.875 32 H 0.174 0.826 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.280 -7.857 0.033 8.514 hybrid contribution 1.930 -0.738 0.002 2.066 sum -1.351 -8.595 0.035 8.700 Atomic orbital electron populations 1.69730 1.07366 1.28605 1.31516 1.25804 0.94729 1.00542 0.92423 0.86218 0.80183 0.80442 0.79230 1.19380 1.20056 1.18617 1.20991 0.93874 0.88206 1.53805 0.90691 1.18663 0.87901 0.80157 0.78683 1.90650 1.12889 1.84812 1.51054 1.46015 1.08792 1.04519 1.66509 1.72251 1.29187 0.92724 0.97064 1.22196 0.95975 0.90034 1.20826 1.17444 0.90879 0.91170 0.96838 1.20811 1.01798 0.88871 0.96734 1.19875 0.91658 0.81097 1.15775 1.50542 1.03122 1.04307 0.95527 1.96267 0.88983 1.96242 1.55651 1.96251 1.68670 1.16697 1.55851 1.20882 0.90470 1.00345 0.97450 1.21762 1.01037 0.91660 1.01917 1.19513 0.92580 0.88920 0.93757 1.59138 1.27242 1.29806 1.02627 1.22769 0.95438 0.98843 0.91862 1.22719 0.95040 0.96405 0.87385 1.87866 1.34801 1.93704 1.14210 1.22672 0.95914 0.96175 0.86596 1.22797 0.94673 0.98895 0.92818 0.91133 0.79982 0.87494 0.82616 0.83438 0.84036 0.94547 0.90057 0.88855 0.89525 0.89250 0.89483 0.90041 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.22 11.83 55.60 0.66 -18.56 16 2 C 0.09 2.13 5.52 -17.23 -0.10 2.03 16 3 Si 0.92 17.58 29.57 -169.99 -5.03 12.55 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.53 -12.80 9.58 -35.32 -0.34 -13.14 16 8 H 0.07 1.63 7.86 -52.49 -0.41 1.22 16 9 C 0.54 12.97 7.83 -13.01 -0.10 12.87 16 10 O -0.52 -13.79 12.97 5.05 0.07 -13.72 16 11 N -0.51 -10.05 5.88 30.20 0.18 -9.87 16 12 N -0.09 -1.57 8.18 31.12 0.25 -1.32 16 13 C -0.10 -1.42 10.40 -16.34 -0.17 -1.59 16 14 C 0.04 0.56 5.77 -106.43 -0.61 -0.06 16 15 C -0.06 -0.72 9.25 -39.36 -0.36 -1.08 16 16 C 0.00 0.03 6.84 -80.29 -0.55 -0.52 16 17 N -0.01 -0.19 4.98 33.79 0.17 -0.02 16 18 O -0.18 -2.75 19.09 -31.57 -0.60 -3.35 16 19 O -0.18 -2.77 19.12 -31.56 -0.60 -3.37 16 20 C -0.07 -0.77 9.57 -39.35 -0.38 -1.15 16 21 C -0.14 -1.58 8.59 -39.41 -0.34 -1.92 16 22 C 0.15 2.03 4.73 -83.38 -0.39 1.64 16 23 N -0.47 -7.01 2.33 -170.31 -0.40 -7.41 16 24 C 0.04 0.53 5.39 -3.71 -0.02 0.51 16 25 C 0.06 1.02 7.01 37.21 0.26 1.28 16 26 O -0.39 -6.81 10.83 -35.23 -0.38 -7.19 16 27 C 0.06 1.04 7.01 37.21 0.26 1.30 16 28 C 0.03 0.49 5.35 -3.71 -0.02 0.47 16 29 H 0.28 6.52 8.28 -40.82 -0.34 6.18 16 30 H 0.36 6.01 8.43 -190.12 -1.60 4.41 16 31 H 0.11 1.35 7.95 -52.49 -0.42 0.93 16 32 H 0.16 1.70 7.51 -52.49 -0.39 1.30 16 33 H 0.15 1.42 7.55 -52.49 -0.40 1.02 16 34 H 0.14 1.34 7.03 -52.49 -0.37 0.97 16 35 H 0.04 0.46 7.39 -51.93 -0.38 0.07 16 36 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 37 H 0.09 1.95 6.73 -51.93 -0.35 1.60 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.84 7.09 -51.93 -0.37 1.47 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 42 H 0.04 0.46 7.20 -51.93 -0.37 0.09 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -28.87 364.52 -8.95 -37.81 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.89 Total: 8.31 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.86 Total: 0.64 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.86 Total: -37.18 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.52 Total: -27.63 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.87 -8.95 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004906949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.613 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds