Wall clock time and date at job start Tue Mar 31 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31371 * 119.81469 * 2 1 4 4 C 1.32994 * 123.17765 * 180.02562 * 3 2 1 5 5 C 1.37312 * 120.28984 * 359.67268 * 4 3 2 6 6 C 1.39935 * 118.77719 * 0.41520 * 5 4 3 7 7 C 1.47106 * 134.22293 * 179.75928 * 6 5 4 8 8 C 1.39349 * 133.66230 * 0.05873 * 7 6 5 9 9 C 1.37767 * 119.83973 * 180.02562 * 8 7 6 10 10 C 1.38688 * 120.26411 * 0.02562 * 9 8 7 11 11 C 1.37770 * 120.54850 * 359.96216 * 10 9 8 12 12 C 1.39181 * 120.06837 * 0.02562 * 11 10 9 13 13 N 1.38342 * 132.23552 * 179.97438 * 12 11 10 14 14 C 1.46498 * 124.88258 * 0.04724 * 13 12 11 15 15 C 1.50701 * 109.47383 * 269.96165 * 14 13 12 16 16 H 1.07996 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00215 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99906 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46952 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46896 * 119.99983 * 19 17 15 22 22 H 1.48495 * 109.47434 * 240.00128 * 19 17 15 23 23 C 1.38154 * 110.22259 * 180.02562 * 13 12 11 24 24 C 1.50466 * 122.86845 * 180.46210 * 5 4 3 25 25 C 1.52759 * 110.63820 * 342.28184 * 24 5 4 26 26 C 1.53331 * 108.31183 * 50.82398 * 25 24 5 27 27 C 1.52997 * 109.68265 * 50.03556 * 26 25 24 28 28 C 1.53008 * 109.67540 * 170.54235 * 26 25 24 29 29 C 1.50738 * 117.41070 * 179.21336 * 4 3 2 30 30 H 1.09001 * 109.46776 * 270.01866 * 1 2 3 31 31 H 1.08999 * 109.47799 * 30.01677 * 1 2 3 32 32 H 1.08997 * 109.47342 * 150.02030 * 1 2 3 33 33 H 1.07997 * 120.08376 * 0.02562 * 8 7 6 34 34 H 1.07998 * 119.87007 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.72350 * 179.97438 * 10 9 8 36 36 H 1.07995 * 119.96646 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47357 * 29.96582 * 14 13 12 38 38 H 1.09005 * 109.46707 * 149.96301 * 14 13 12 39 39 H 0.97001 * 119.99843 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.24421 * 221.98623 * 24 5 4 41 41 H 1.09001 * 109.24751 * 102.58573 * 24 5 4 42 42 H 1.08999 * 109.69460 * 291.11904 * 25 24 5 43 43 H 1.08998 * 109.72866 * 170.54498 * 25 24 5 44 44 H 1.09002 * 109.47153 * 59.99621 * 27 26 25 45 45 H 1.09001 * 109.46832 * 299.99812 * 27 26 25 46 46 H 1.09004 * 109.47261 * 179.97438 * 27 26 25 47 47 H 1.08995 * 109.46581 * 299.49290 * 28 26 25 48 48 H 1.08998 * 109.46764 * 59.49029 * 28 26 25 49 49 H 1.08999 * 109.47033 * 179.48787 * 28 26 25 50 50 H 1.09002 * 109.22946 * 42.05664 * 29 4 3 51 51 H 1.08998 * 109.25454 * 282.65403 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1602 1.1398 0.0000 4 6 3.4878 1.2178 -0.0005 5 6 4.2487 0.0749 0.0057 6 6 3.6011 -1.1656 0.0037 7 6 4.0608 -2.5630 0.0040 8 6 5.3190 -3.1619 0.0076 9 6 5.4244 -4.5355 0.0063 10 6 4.2835 -5.3241 0.0009 11 6 3.0328 -4.7461 -0.0024 12 6 2.9051 -3.3602 -0.0009 13 7 1.7998 -2.5283 -0.0039 14 6 0.4077 -2.9846 -0.0088 15 6 -0.0654 -3.1391 -1.4312 16 1 0.6041 -2.9197 -2.2497 17 6 -1.3529 -3.5604 -1.6876 18 7 -2.1683 -3.8270 -0.6908 19 14 -1.9395 -3.7513 -3.4508 20 1 -0.8389 -3.3909 -4.3804 21 1 -2.3456 -5.1599 -3.6876 22 1 -3.1001 -2.8553 -3.6861 23 6 2.1978 -1.2053 -0.0011 24 6 5.7532 0.0955 0.0157 25 6 6.2758 1.4641 -0.4173 26 6 5.5648 2.5369 0.4160 27 6 5.6472 2.1752 1.9003 28 6 6.2270 3.8959 0.1794 29 6 4.1021 2.5943 -0.0188 30 1 -0.3633 0.0003 1.0277 31 1 -0.3635 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 6.2094 -2.5508 0.0114 34 1 6.3992 -5.0002 0.0087 35 1 4.3762 -6.4001 -0.0005 36 1 2.1507 -5.3692 -0.0070 37 1 0.3380 -3.9441 0.5036 38 1 -0.2163 -2.2527 0.5042 39 1 -3.0742 -4.1231 -0.8712 40 1 6.1275 -0.6651 -0.6694 41 1 6.1089 -0.1228 1.0227 42 1 6.0641 1.6203 -1.4750 43 1 7.3509 1.5185 -0.2458 44 1 6.6929 2.1169 2.2025 45 1 5.1667 1.2111 2.0666 46 1 5.1412 2.9402 2.4894 47 1 7.2729 3.8479 0.4822 48 1 6.1663 4.1502 -0.8788 49 1 5.7133 4.6574 0.7661 50 1 3.5502 3.2427 0.6617 51 1 4.0431 3.0008 -1.0284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004907183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:29 Heat of formation + Delta-G solvation = 51.331213 kcal Electronic energy + Delta-G solvation = -31378.380679 eV Core-core repulsion = 27627.183140 eV Total energy + Delta-G solvation = -3751.197539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.190 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.43917 -39.52545 -37.71594 -36.05115 -34.03347 -32.99995 -31.59189 -31.12142 -29.69930 -28.74740 -27.76194 -27.52050 -27.34132 -25.45798 -23.40259 -22.87900 -22.74939 -21.72435 -20.33101 -20.01976 -18.17933 -16.93262 -16.77884 -16.58440 -15.88038 -15.30898 -14.94428 -14.78741 -14.59910 -14.35844 -14.13295 -13.86598 -13.78807 -13.49430 -13.24757 -13.13358 -12.71593 -12.58541 -12.53967 -12.38488 -12.17656 -12.01678 -11.89097 -11.75706 -11.56660 -11.34789 -11.21649 -11.10786 -11.06574 -10.68089 -10.67229 -10.62644 -10.54704 -10.32385 -10.23972 -10.21836 -9.71784 -9.26996 -9.03951 -8.72452 -8.36031 -7.78606 -6.81818 -6.30079 -4.42796 1.14067 1.46049 2.27688 2.39904 3.14916 3.23777 3.28452 3.51736 4.16939 4.25654 4.32803 4.43976 4.65813 4.73763 4.89457 4.93424 4.98292 5.00619 5.14471 5.26755 5.33034 5.33733 5.43855 5.49845 5.54991 5.61305 5.65646 5.71646 5.72439 5.81092 5.84244 5.89395 5.93345 5.96348 5.99123 6.00999 6.11991 6.18210 6.22639 6.24355 6.29566 6.33876 6.40025 6.42906 6.55534 6.65700 6.73291 6.84913 6.88683 6.97183 7.07287 7.17824 7.26928 7.58932 7.79936 7.84067 7.95335 8.57754 8.65347 9.25388 10.72722 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003941 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.227638 B = 7102.709447 C = 8848.178397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.144 3.856 3 N -0.470 5.470 4 C 0.078 3.922 5 C -0.078 4.078 6 C -0.086 4.086 7 C -0.120 4.120 8 C -0.063 4.063 9 C -0.167 4.167 10 C -0.090 4.090 11 C -0.130 4.130 12 C 0.160 3.840 13 N -0.461 5.461 14 C 0.230 3.770 15 C -0.541 4.541 16 H 0.064 0.936 17 C 0.069 3.931 18 N -0.887 5.887 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.103 3.897 24 C -0.073 4.073 25 C -0.108 4.108 26 C -0.064 4.064 27 C -0.143 4.143 28 C -0.138 4.138 29 C -0.043 4.043 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.077 0.923 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.680 7.365 3.387 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.005 4.005 3 N -0.180 5.180 4 C -0.053 4.053 5 C -0.080 4.080 6 C -0.097 4.097 7 C -0.125 4.125 8 C -0.082 4.082 9 C -0.187 4.187 10 C -0.110 4.110 11 C -0.150 4.150 12 C 0.052 3.948 13 N -0.143 5.143 14 C 0.112 3.888 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.727 3.273 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.007 4.007 24 C -0.110 4.110 25 C -0.145 4.145 26 C -0.065 4.065 27 C -0.200 4.200 28 C -0.196 4.196 29 C -0.081 4.081 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.095 0.905 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.692 8.018 3.435 17.086 hybrid contribution -0.198 -1.120 -0.985 1.505 sum 14.494 6.898 2.451 16.237 Atomic orbital electron populations 1.21091 0.88358 1.05422 1.02775 1.20334 0.96658 0.84907 0.98562 1.67193 1.09786 1.27583 1.13405 1.20384 0.88396 0.94158 1.02406 1.19556 0.95849 0.90723 1.01876 1.18842 0.92101 0.92029 1.06714 1.18574 0.93141 0.90672 1.10072 1.20426 0.94916 0.94373 0.98484 1.20731 0.98114 0.93167 1.06638 1.20778 0.91540 0.99332 0.99353 1.20231 0.98368 0.91174 1.05254 1.18390 0.85926 0.92032 0.98472 1.44770 1.07524 1.01685 1.60356 1.19940 0.72973 0.96962 0.98899 1.21367 0.97961 1.47143 0.91428 0.91774 1.24913 0.96165 0.94427 0.97959 1.69923 1.07092 1.44400 1.31023 0.86384 0.78904 0.78032 0.83952 1.19545 1.20619 1.20499 1.19056 0.93215 0.86513 1.01931 1.20384 0.91064 0.97675 1.01911 1.21635 0.99263 0.93884 0.99726 1.20532 0.94754 0.95315 0.95855 1.21933 1.01306 1.02131 0.94652 1.21829 1.00185 0.95934 1.01614 1.20203 0.93587 0.92304 1.01988 0.91369 0.91250 0.87033 0.86462 0.86392 0.86022 0.85517 0.93734 0.92413 0.92223 0.90936 0.90565 0.91614 0.91509 0.92850 0.91928 0.92842 0.92604 0.92601 0.92580 0.90491 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.95 36.01 0.32 -2.02 16 2 C 0.14 2.96 6.81 -82.53 -0.56 2.40 16 3 N -0.47 -9.05 10.06 -5.64 -0.06 -9.10 16 4 C 0.08 1.31 6.19 -82.41 -0.51 0.80 16 5 C -0.08 -1.30 5.03 -104.44 -0.52 -1.82 16 6 C -0.09 -1.67 6.13 -104.86 -0.64 -2.31 16 7 C -0.12 -2.25 6.22 -105.07 -0.65 -2.91 16 8 C -0.06 -0.97 9.63 -39.34 -0.38 -1.35 16 9 C -0.17 -2.34 10.03 -39.59 -0.40 -2.73 16 10 C -0.09 -1.35 10.01 -39.59 -0.40 -1.75 16 11 C -0.13 -2.37 9.85 -39.40 -0.39 -2.76 16 12 C 0.16 3.30 6.77 -83.76 -0.57 2.73 16 13 N -0.46 -10.28 2.81 -112.85 -0.32 -10.60 16 14 C 0.23 5.54 4.94 -5.19 -0.03 5.51 16 15 C -0.54 -14.09 8.28 -34.44 -0.29 -14.37 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 19 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 C 0.10 2.20 6.72 -83.95 -0.56 1.64 16 24 C -0.07 -0.92 4.45 -28.12 -0.13 -1.05 16 25 C -0.11 -1.13 4.96 -26.68 -0.13 -1.27 16 26 C -0.06 -0.67 0.78 -154.49 -0.12 -0.79 16 27 C -0.14 -1.51 7.73 37.16 0.29 -1.22 16 28 C -0.14 -1.16 8.49 37.16 0.32 -0.84 16 29 C -0.04 -0.56 4.66 -28.02 -0.13 -0.69 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.11 2.48 4.56 -51.93 -0.24 2.24 16 33 H 0.12 1.49 6.49 -52.49 -0.34 1.15 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.13 2.34 7.91 -52.49 -0.42 1.92 16 37 H 0.04 1.12 7.90 -51.93 -0.41 0.71 16 38 H 0.06 1.42 5.63 -51.93 -0.29 1.12 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.07 0.91 6.66 -51.93 -0.35 0.56 16 41 H 0.08 0.91 6.83 -51.93 -0.35 0.55 16 42 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.78 5.58 -51.93 -0.29 0.49 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 51 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -28.22 392.38 -12.05 -40.27 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.72 Total: 4.21 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -5.58 Total: -23.09 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.36 Total: -42.80 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.22 -12.05 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004907183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.598 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds