Wall clock time and date at job start Tue Mar 31 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47006 * 2 1 4 4 O 1.45194 * 109.47413 * 120.00606 * 2 1 3 5 5 C 1.34769 * 117.00475 * 149.99575 * 4 2 1 6 6 O 1.21547 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.47145 * 120.00506 * 179.97438 * 5 4 2 8 8 C 1.38045 * 126.81694 * 0.02836 * 7 5 4 9 9 N 1.34115 * 107.87703 * 179.73928 * 8 7 5 10 10 C 1.46497 * 125.15509 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.47704 * 124.99515 * 10 9 8 12 12 H 1.08007 * 120.00142 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00354 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99805 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00213 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47021 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46904 * 120.00231 * 15 13 11 18 18 H 1.48492 * 109.47440 * 240.00089 * 15 13 11 19 19 N 1.39770 * 109.69311 * 359.97438 * 9 8 7 20 20 C 1.31343 * 109.10229 * 0.02562 * 19 9 8 21 21 C 1.48290 * 126.51831 * 180.02562 * 20 19 9 22 22 C 1.39410 * 120.11781 * 324.99761 * 21 20 19 23 23 C 1.37983 * 119.89987 * 179.97438 * 22 21 20 24 24 C 1.38334 * 120.14190 * 0.02562 * 23 22 21 25 25 C 1.38421 * 120.23875 * 359.96970 * 24 23 22 26 26 Cl 1.73596 * 119.95197 * 180.02562 * 25 24 23 27 27 C 1.38149 * 120.09846 * 359.79373 * 25 24 23 28 28 H 1.09000 * 109.46729 * 299.99682 * 1 2 3 29 29 H 1.08991 * 109.47432 * 59.99749 * 1 2 3 30 30 H 1.09004 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46729 * 240.00318 * 2 1 3 32 32 H 1.09006 * 109.47022 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47227 * 299.99942 * 3 2 1 34 34 H 1.09000 * 109.47117 * 60.00556 * 3 2 1 35 35 H 1.07995 * 126.06032 * 359.75442 * 8 7 5 36 36 H 1.09004 * 109.47194 * 244.99704 * 10 9 8 37 37 H 1.09005 * 109.47115 * 4.99318 * 10 9 8 38 38 H 0.97000 * 120.00042 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.04686 * 359.95756 * 22 21 20 40 40 H 1.07999 * 119.93226 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.88131 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.07247 * 180.24887 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 3.1984 -1.3197 1.0845 6 8 3.8103 -1.3015 0.0345 7 6 3.7515 -2.0343 2.2459 8 6 3.1805 -2.1449 3.4978 9 7 4.0019 -2.8805 4.2614 10 6 3.7611 -3.2325 5.6629 11 6 3.8311 -4.7292 5.8241 12 1 4.0342 -5.3557 4.9681 13 6 3.6359 -5.2989 7.0645 14 7 3.3880 -4.5361 8.1067 15 14 3.7219 -7.1541 7.2642 16 1 4.0116 -7.7806 5.9493 17 1 4.8007 -7.4990 8.2247 18 1 2.4227 -7.6576 7.7774 19 7 5.1220 -3.2612 3.5170 20 6 5.0153 -2.7759 2.3012 21 6 5.9876 -2.9463 1.1946 22 6 7.3545 -2.9903 1.4650 23 6 8.2552 -3.1496 0.4319 24 6 7.8047 -3.2650 -0.8709 25 6 6.4488 -3.2222 -1.1460 26 17 5.8915 -3.3684 -2.7836 27 6 5.5380 -3.0679 -0.1187 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2392 -1.7156 3.8074 36 1 4.5188 -2.7636 6.2907 37 1 2.7735 -2.8807 5.9614 38 1 3.2510 -4.9368 8.9794 39 1 7.7079 -2.8997 2.4815 40 1 9.3143 -3.1842 0.6408 41 1 8.5134 -3.3899 -1.6762 42 1 4.4799 -3.0386 -0.3334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:16 Heat of formation + Delta-G solvation = -4.050084 kcal Electronic energy + Delta-G solvation = -27541.758000 eV Core-core repulsion = 23514.059909 eV Total energy + Delta-G solvation = -4027.698091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85885 -39.74409 -38.89127 -36.50507 -36.30443 -33.96080 -33.15538 -32.45439 -30.71788 -30.50006 -29.84949 -27.39905 -27.26490 -23.95529 -23.92274 -22.61531 -21.99695 -21.13952 -20.08703 -19.43103 -17.59243 -17.25790 -16.75250 -16.13524 -15.94076 -15.57617 -15.18714 -15.10174 -14.47210 -14.42776 -14.18672 -13.83524 -13.63694 -13.45688 -13.36905 -13.04579 -12.59829 -12.42444 -12.38726 -12.26939 -11.93592 -11.81115 -11.52817 -11.44053 -11.35134 -11.09095 -10.99622 -10.94434 -10.81732 -10.52906 -10.43301 -10.27615 -10.00146 -9.93464 -9.31107 -8.77223 -8.60227 -8.50389 -7.97873 -6.39173 -4.45293 1.04929 1.40922 1.80864 2.22673 2.62397 2.78861 3.15275 3.18834 3.23748 3.31707 3.45449 3.91285 4.20417 4.55925 4.71617 4.83772 4.85473 4.97249 5.02604 5.07072 5.10463 5.23343 5.37051 5.39028 5.46998 5.52980 5.59396 5.66883 5.77499 5.83643 5.89827 5.95442 6.02042 6.05896 6.28770 6.38702 6.49652 6.63520 6.72625 6.77757 6.87783 6.96403 7.41750 7.63514 7.66275 8.10614 8.20573 8.62073 9.21885 10.69945 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.008057 B = 0.003648 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3474.242711 B = 7673.469948 C =10209.613911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 C -0.169 4.169 4 O -0.354 6.354 5 C 0.547 3.453 6 O -0.518 6.518 7 C -0.304 4.304 8 C 0.130 3.870 9 N -0.308 5.308 10 C 0.248 3.752 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.254 5.254 20 C 0.140 3.860 21 C 0.001 3.999 22 C -0.084 4.084 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.043 4.043 26 Cl -0.079 7.079 27 C -0.052 4.052 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.187 0.813 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.269 0.731 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 8.493 -16.034 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 C -0.226 4.226 4 O -0.271 6.271 5 C 0.395 3.605 6 O -0.409 6.409 7 C -0.318 4.318 8 C -0.025 4.025 9 N -0.084 5.084 10 C 0.132 3.868 11 C -0.573 4.573 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.206 1.206 19 N -0.074 5.074 20 C -0.027 4.027 21 C -0.002 4.002 22 C -0.104 4.104 23 C -0.138 4.138 24 C -0.126 4.126 25 C -0.069 4.069 26 Cl -0.050 7.050 27 C -0.072 4.072 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.204 0.796 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.946 7.757 -15.255 17.140 hybrid contribution -0.635 -0.370 -0.362 0.820 sum 0.311 7.387 -15.617 17.279 Atomic orbital electron populations 1.21883 0.92751 1.03152 1.02870 1.22624 0.94602 0.92555 0.87447 1.22197 1.02302 0.95451 1.02656 1.86625 1.36750 1.63106 1.40625 1.19993 0.78366 0.75256 0.86928 1.90773 1.59532 1.60283 1.30309 1.20076 1.00270 1.17585 0.93872 1.23141 0.96304 0.92720 0.90308 1.49341 1.12446 1.33673 1.12897 1.20026 0.98818 0.98494 0.69491 1.21219 1.50667 0.89935 0.95491 0.91015 1.24925 0.94239 0.99442 0.95178 1.69911 1.47215 1.35725 1.00118 0.86249 0.77885 0.83766 0.78547 1.19410 1.20544 1.20633 1.77487 1.07126 1.20316 1.02488 1.21572 0.92560 0.96347 0.92213 1.17565 0.91190 1.01451 0.89949 1.21360 0.91795 0.97180 1.00027 1.20938 0.99833 1.01394 0.91662 1.21066 0.93521 1.00512 0.97498 1.20679 0.93772 1.06925 0.85540 1.98342 1.90065 1.96514 1.20063 1.21412 1.01117 0.94665 0.89988 0.91452 0.90689 0.91668 0.89754 0.91864 0.91100 0.91689 0.79639 0.92869 0.91999 0.92153 0.84900 0.85017 0.85289 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.57 37.16 0.36 -0.94 16 2 C 0.08 0.94 3.19 -26.73 -0.09 0.85 16 3 C -0.17 -1.68 9.55 37.16 0.35 -1.33 16 4 O -0.35 -5.04 9.72 -40.68 -0.40 -5.43 16 5 C 0.55 8.98 7.79 34.35 0.27 9.25 16 6 O -0.52 -8.91 11.71 -19.30 -0.23 -9.14 16 7 C -0.30 -5.44 6.27 -102.96 -0.65 -6.09 16 8 C 0.13 2.29 11.23 -16.63 -0.19 2.10 16 9 N -0.31 -6.43 3.62 -62.03 -0.22 -6.66 16 10 C 0.25 5.74 6.21 -5.20 -0.03 5.71 16 11 C -0.53 -13.94 9.21 -34.44 -0.32 -14.26 16 12 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -23.95 13.29 55.43 0.74 -23.21 16 15 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 N -0.25 -5.43 12.27 34.58 0.42 -5.01 16 20 C 0.14 2.69 6.94 -80.55 -0.56 2.13 16 21 C 0.00 0.01 5.73 -104.91 -0.60 -0.59 16 22 C -0.08 -1.26 9.76 -39.24 -0.38 -1.65 16 23 C -0.12 -1.48 10.03 -39.64 -0.40 -1.88 16 24 C -0.11 -1.33 9.82 -39.48 -0.39 -1.71 16 25 C -0.04 -0.61 6.31 -39.55 -0.25 -0.86 16 26 Cl -0.08 -1.03 28.95 -51.86 -1.50 -2.53 16 27 C -0.05 -0.85 7.55 -39.20 -0.30 -1.14 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.02 7.16 -51.93 -0.37 0.64 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 36 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.39 8.05 -51.93 -0.42 0.97 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.15 2.58 5.66 -52.48 -0.30 2.29 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -28.78 381.25 -9.00 -37.78 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.28 Total: 1.73 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.26 Total: -8.78 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.94 Total: -34.88 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.62 Total: -14.57 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.78 -9.00 -37.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.732 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds