Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47006 * 2 1 4 4 O 1.45194 * 109.47413 * 120.00606 * 2 1 3 5 5 C 1.34769 * 117.00475 * 149.99575 * 4 2 1 6 6 O 1.21547 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.47145 * 120.00506 * 179.97438 * 5 4 2 8 8 C 1.38045 * 126.81694 * 0.02836 * 7 5 4 9 9 N 1.34115 * 107.87703 * 179.73928 * 8 7 5 10 10 C 1.46497 * 125.15509 * 180.02562 * 9 8 7 11 11 C 1.50692 * 109.47704 * 124.99515 * 10 9 8 12 12 H 1.08007 * 120.00142 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00354 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99805 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00213 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47021 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46904 * 120.00231 * 15 13 11 18 18 H 1.48492 * 109.47440 * 240.00089 * 15 13 11 19 19 N 1.39770 * 109.69311 * 359.97438 * 9 8 7 20 20 C 1.31343 * 109.10229 * 0.02562 * 19 9 8 21 21 C 1.48290 * 126.51831 * 180.02562 * 20 19 9 22 22 C 1.39410 * 120.11781 * 324.99761 * 21 20 19 23 23 C 1.37983 * 119.89987 * 179.97438 * 22 21 20 24 24 C 1.38334 * 120.14190 * 0.02562 * 23 22 21 25 25 C 1.38421 * 120.23875 * 359.96970 * 24 23 22 26 26 Cl 1.73596 * 119.95197 * 180.02562 * 25 24 23 27 27 C 1.38149 * 120.09846 * 359.79373 * 25 24 23 28 28 H 1.09000 * 109.46729 * 299.99682 * 1 2 3 29 29 H 1.08991 * 109.47432 * 59.99749 * 1 2 3 30 30 H 1.09004 * 109.47429 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46729 * 240.00318 * 2 1 3 32 32 H 1.09006 * 109.47022 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47227 * 299.99942 * 3 2 1 34 34 H 1.09000 * 109.47117 * 60.00556 * 3 2 1 35 35 H 1.07995 * 126.06032 * 359.75442 * 8 7 5 36 36 H 1.09004 * 109.47194 * 244.99704 * 10 9 8 37 37 H 1.09005 * 109.47115 * 4.99318 * 10 9 8 38 38 H 0.97000 * 120.00042 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.04686 * 359.95756 * 22 21 20 40 40 H 1.07999 * 119.93226 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.88131 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.07247 * 180.24887 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 3.1984 -1.3197 1.0845 6 8 3.8103 -1.3015 0.0345 7 6 3.7515 -2.0343 2.2459 8 6 3.1805 -2.1449 3.4978 9 7 4.0019 -2.8805 4.2614 10 6 3.7611 -3.2325 5.6629 11 6 3.8311 -4.7292 5.8241 12 1 4.0342 -5.3557 4.9681 13 6 3.6359 -5.2989 7.0645 14 7 3.3880 -4.5361 8.1067 15 14 3.7219 -7.1541 7.2642 16 1 4.0116 -7.7806 5.9493 17 1 4.8007 -7.4990 8.2247 18 1 2.4227 -7.6576 7.7774 19 7 5.1220 -3.2612 3.5170 20 6 5.0153 -2.7759 2.3012 21 6 5.9876 -2.9463 1.1946 22 6 7.3545 -2.9903 1.4650 23 6 8.2552 -3.1496 0.4319 24 6 7.8047 -3.2650 -0.8709 25 6 6.4488 -3.2222 -1.1460 26 17 5.8915 -3.3684 -2.7836 27 6 5.5380 -3.0679 -0.1187 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2392 -1.7156 3.8074 36 1 4.5188 -2.7636 6.2907 37 1 2.7735 -2.8807 5.9614 38 1 3.2510 -4.9368 8.9794 39 1 7.7079 -2.8997 2.4815 40 1 9.3143 -3.1842 0.6408 41 1 8.5134 -3.3899 -1.6762 42 1 4.4799 -3.0386 -0.3334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -16.918721 kcal Electronic energy + Delta-G solvation = -27542.316026 eV Core-core repulsion = 23514.059909 eV Total energy + Delta-G solvation = -4028.256117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.103 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27718 -40.99472 -40.03817 -37.67420 -37.38922 -35.75973 -34.10590 -34.05444 -31.94047 -31.89213 -31.18686 -28.97629 -28.14438 -25.64569 -25.18626 -23.74769 -23.36132 -22.28277 -21.31892 -20.80045 -18.98093 -18.66939 -18.39240 -17.45059 -17.18161 -16.83806 -16.60297 -16.30696 -15.99775 -15.87393 -15.23616 -15.01939 -14.82515 -14.68491 -14.52494 -14.24861 -13.97784 -13.84803 -13.68641 -13.13270 -13.11739 -13.04427 -12.78012 -12.73462 -12.58082 -12.50781 -12.48326 -12.33571 -11.99488 -11.84226 -11.78609 -11.68989 -11.52737 -11.20977 -10.85526 -10.70662 -9.90724 -9.70973 -9.38651 -8.38273 -6.50959 -0.14387 0.27517 0.44651 1.09317 1.25236 1.36068 1.39069 1.44401 1.52839 1.86549 2.13662 2.32720 2.72494 2.95890 3.26851 3.51454 3.88856 3.95278 3.97788 4.02436 4.12882 4.19744 4.22484 4.24047 4.32363 4.47733 4.64994 4.72253 4.78373 4.82758 4.87078 4.89297 4.94068 4.99989 5.14249 5.17922 5.27641 5.28922 5.42265 5.47117 5.53396 5.59672 5.74605 5.80169 5.93862 6.54594 6.66340 6.90984 7.19395 8.70544 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.008057 B = 0.003648 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3474.242711 B = 7673.469948 C =10209.613911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.165 4.165 4 O -0.355 6.355 5 C 0.551 3.449 6 O -0.527 6.527 7 C -0.313 4.313 8 C 0.139 3.861 9 N -0.329 5.329 10 C 0.263 3.737 11 C -0.550 4.550 12 H 0.052 0.948 13 C 0.026 3.974 14 N -0.916 5.916 15 Si 0.967 3.033 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.269 1.269 19 N -0.296 5.296 20 C 0.142 3.858 21 C -0.029 4.029 22 C -0.094 4.094 23 C -0.107 4.107 24 C -0.095 4.095 25 C -0.051 4.051 26 Cl -0.068 7.068 27 C -0.063 4.063 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.220 0.780 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.274 0.726 39 H 0.129 0.871 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 8.791 -17.659 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.019 3.981 3 C -0.222 4.222 4 O -0.272 6.272 5 C 0.399 3.601 6 O -0.419 6.419 7 C -0.327 4.327 8 C -0.014 4.014 9 N -0.105 5.105 10 C 0.145 3.855 11 C -0.588 4.588 12 H 0.071 0.929 13 C -0.176 4.176 14 N -0.554 5.554 15 Si 0.791 3.209 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.195 1.195 19 N -0.116 5.116 20 C -0.025 4.025 21 C -0.031 4.031 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.113 4.113 25 C -0.078 4.078 26 Cl -0.040 7.040 27 C -0.083 4.083 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.236 0.764 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.147 0.853 40 H 0.187 0.813 41 H 0.181 0.819 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.080 8.073 -16.892 18.753 hybrid contribution -0.663 -0.386 -0.033 0.768 sum 0.417 7.687 -16.925 18.593 Atomic orbital electron populations 1.21904 0.90357 1.03396 1.04417 1.23002 0.96384 0.92855 0.85904 1.22187 1.00937 0.94771 1.04279 1.86607 1.35462 1.62883 1.42227 1.19734 0.78940 0.75254 0.86208 1.90766 1.60033 1.60605 1.30472 1.20330 1.00155 1.17605 0.94611 1.23675 0.96691 0.91323 0.89717 1.49065 1.13450 1.35453 1.12499 1.19622 0.98299 0.96786 0.70797 1.21355 1.50925 0.91418 0.95130 0.92935 1.25624 0.93799 1.03303 0.94846 1.69971 1.47687 1.37257 1.00517 0.85370 0.78364 0.79083 0.78061 1.20115 1.19904 1.19452 1.77408 1.08198 1.22248 1.03712 1.22053 0.93274 0.95198 0.92016 1.17706 0.91849 1.03859 0.89689 1.21491 0.91432 0.97557 1.00857 1.21332 1.01178 0.99207 0.90776 1.21477 0.93124 0.98265 0.98480 1.20835 0.94444 1.06849 0.85639 1.98342 1.90158 1.96450 1.19002 1.21277 1.00829 0.95874 0.90298 0.90908 0.88093 0.92099 0.90731 0.93938 0.88525 0.91027 0.76383 0.94920 0.91302 0.91715 0.85281 0.81267 0.81925 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.57 71.98 0.69 -1.50 16 2 C 0.07 1.57 3.19 30.59 0.10 1.66 16 3 C -0.16 -3.04 9.55 71.98 0.69 -2.35 16 4 O -0.35 -9.94 9.72 -56.80 -0.55 -10.49 16 5 C 0.55 18.33 7.79 70.16 0.55 18.87 16 6 O -0.53 -18.43 11.71 19.68 0.23 -18.20 16 7 C -0.31 -11.51 6.27 -18.79 -0.12 -11.63 16 8 C 0.14 4.98 11.23 84.30 0.95 5.93 16 9 N -0.33 -14.25 3.62 -350.16 -1.27 -15.52 16 10 C 0.26 12.59 6.21 85.63 0.53 13.12 16 11 C -0.55 -29.51 9.21 25.60 0.24 -29.27 16 12 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 13 C 0.03 1.35 5.46 84.66 0.46 1.81 16 14 N -0.92 -49.57 13.29 21.45 0.28 -49.29 16 15 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 N -0.30 -13.24 12.27 -44.51 -0.55 -13.79 16 20 C 0.14 5.67 6.94 44.09 0.31 5.98 16 21 C -0.03 -1.01 5.73 -20.05 -0.11 -1.12 16 22 C -0.09 -2.79 9.76 22.49 0.22 -2.57 16 23 C -0.11 -2.38 10.03 22.23 0.22 -2.16 16 24 C -0.09 -2.09 9.82 22.34 0.22 -1.87 16 25 C -0.05 -1.40 6.31 22.29 0.14 -1.26 16 26 Cl -0.07 -1.69 28.95 -2.72 -0.08 -1.77 16 27 C -0.06 -2.06 7.55 22.52 0.17 -1.89 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.76 7.16 -2.39 -0.02 1.74 16 32 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.22 5.99 8.06 -2.91 -0.02 5.97 16 36 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.07 3.16 8.05 -2.38 -0.02 3.14 16 38 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.14 4.78 5.66 -2.91 -0.02 4.77 16 Total: -1.00 -63.91 381.25 6.38 -57.53 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.04 Total: 15.43 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.24 Total: -8.27 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -1.53 Total: -78.60 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.32 Total: -28.69 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -63.91 6.38 -57.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.611 kcal (2) G-P(sol) polarization free energy of solvation -63.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds