Wall clock time and date at job start Tue Mar 31 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00529 * 2 1 4 4 C 1.34784 * 119.99980 * 179.97438 * 2 1 3 5 5 O 1.21621 * 119.99498 * 4.06691 * 4 2 1 6 6 C 1.47266 * 120.00094 * 184.07499 * 4 2 1 7 7 C 1.37939 * 126.80564 * 305.85166 * 6 4 2 8 8 N 1.34179 * 107.91455 * 180.02562 * 7 6 4 9 9 C 1.46500 * 125.15506 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.46815 * 124.99916 * 9 8 7 11 11 H 1.08004 * 120.00338 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00240 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99331 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00518 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46990 * 90.00069 * 14 12 10 16 16 H 1.48501 * 109.47433 * 210.00162 * 14 12 10 17 17 H 1.48499 * 109.47220 * 330.00616 * 14 12 10 18 18 N 1.39771 * 109.69098 * 359.75350 * 8 7 6 19 19 C 1.31483 * 109.06221 * 0.42806 * 18 8 7 20 20 C 1.48019 * 126.52700 * 179.85023 * 19 18 8 21 21 C 1.38428 * 120.35301 * 130.23254 * 20 19 18 22 22 C 1.39006 * 120.68273 * 179.97438 * 21 20 19 23 23 C 1.36233 * 121.14617 * 0.02562 * 22 21 20 24 24 C 1.40535 * 120.07174 * 0.02562 * 23 22 21 25 25 C 1.40580 * 121.17230 * 179.97438 * 24 23 22 26 26 C 1.36120 * 119.65678 * 179.97438 * 25 24 23 27 27 C 1.39320 * 120.95809 * 359.97438 * 26 25 24 28 28 C 1.36210 * 120.94580 * 0.02562 * 27 26 25 29 29 C 1.40225 * 119.67989 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47282 * 270.00614 * 1 2 3 31 31 H 1.09010 * 109.46661 * 30.00098 * 1 2 3 32 32 H 1.08994 * 109.47577 * 149.99766 * 1 2 3 33 33 H 1.09001 * 109.47207 * 174.47089 * 3 2 1 34 34 H 1.09001 * 109.46697 * 294.46517 * 3 2 1 35 35 H 1.08993 * 109.47136 * 54.46451 * 3 2 1 36 36 H 1.08001 * 126.04858 * 0.02562 * 7 6 4 37 37 H 1.08990 * 109.47051 * 245.00294 * 9 8 7 38 38 H 1.09002 * 109.46640 * 5.00580 * 9 8 7 39 39 H 0.97002 * 119.99683 * 179.97438 * 13 12 10 40 40 H 1.07995 * 119.66017 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.42844 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.96235 * 179.72193 * 23 22 21 43 43 H 1.07999 * 120.17189 * 359.96735 * 25 24 23 44 44 H 1.08005 * 119.51955 * 179.97438 * 26 25 24 45 45 H 1.08008 * 119.52441 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.15990 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5330 -2.2192 -0.0737 6 6 3.6087 -1.1689 0.0912 7 6 4.4879 -0.4919 -0.7282 8 7 5.7337 -0.7604 -0.3081 9 6 6.9597 -0.2335 -0.9127 10 6 7.7823 0.4597 0.1426 11 1 7.4276 0.5030 1.1618 12 6 8.9884 1.0377 -0.1927 13 7 9.4205 0.9845 -1.4337 14 14 10.0085 1.8963 1.1155 15 1 10.9342 0.9187 1.7421 16 1 10.7935 2.9916 0.4915 17 1 9.1088 2.4611 2.1532 18 7 5.6841 -1.6140 0.7975 19 6 4.4281 -1.8911 1.0701 20 6 3.9346 -2.7612 2.1611 21 6 2.9367 -2.3182 3.0121 22 6 2.4678 -3.1298 4.0386 23 6 2.9744 -4.3788 4.2367 24 6 3.9894 -4.8684 3.3969 25 6 4.5292 -6.1534 3.5807 26 6 5.5111 -6.5967 2.7488 27 6 5.9905 -5.7953 1.7150 28 6 5.4904 -4.5454 1.5081 29 6 4.4780 -4.0552 2.3454 30 1 -0.3634 0.0001 1.0277 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 3.2651 1.0718 0.0990 34 1 2.0107 1.7961 -0.9354 35 1 1.8621 1.8820 0.8362 36 1 4.2210 0.1422 -1.5608 37 1 7.5351 -1.0539 -1.3413 38 1 6.7012 0.4778 -1.6972 39 1 10.2688 1.3915 -1.6698 40 1 2.5181 -1.3319 2.8771 41 1 1.6889 -2.7636 4.6909 42 1 2.5991 -4.9915 5.0430 43 1 4.1667 -6.7854 4.3779 44 1 5.9245 -7.5842 2.8923 45 1 6.7700 -6.1706 1.0683 46 1 5.8711 -3.9351 0.7025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:54 Heat of formation + Delta-G solvation = 89.134069 kcal Electronic energy + Delta-G solvation = -30202.535676 eV Core-core repulsion = 26251.718386 eV Total energy + Delta-G solvation = -3950.817290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.86823 -39.89164 -38.92384 -36.29262 -35.26700 -34.06548 -32.99068 -31.27954 -30.46334 -30.03625 -29.11136 -27.87110 -27.08183 -25.79537 -23.94397 -23.10509 -22.76224 -22.23987 -20.97156 -19.81013 -18.81445 -17.35172 -17.00616 -16.81536 -16.40389 -16.11654 -15.95533 -15.48035 -15.30028 -14.68840 -14.48013 -14.16733 -13.87071 -13.65750 -13.42652 -13.29902 -13.16348 -13.05175 -12.61174 -12.56641 -12.50376 -12.36913 -12.18286 -12.04886 -11.86116 -11.66392 -11.21122 -11.11172 -10.95483 -10.85547 -10.76609 -10.39124 -10.33937 -9.97694 -9.67665 -9.54117 -8.85549 -8.71543 -8.59923 -8.44359 -7.98512 -7.49482 -6.36729 -4.42650 0.62422 1.20747 2.07212 2.20205 2.71781 3.00441 3.17492 3.18770 3.23682 3.24305 3.30679 3.50119 4.21665 4.32040 4.56419 4.84028 4.92817 4.99792 5.00201 5.09621 5.12076 5.21494 5.24206 5.27541 5.33789 5.46393 5.53227 5.54887 5.58922 5.61638 5.73431 5.81436 5.82544 5.87350 6.00107 6.14642 6.26297 6.34245 6.38921 6.51806 6.58155 6.61701 6.69723 6.79909 6.84368 6.97630 7.06174 7.16941 7.47877 7.51216 7.69548 7.70953 8.26839 8.45501 8.64851 9.24206 10.72246 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.007480 B = 0.004309 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.497065 B = 6496.211946 C = 9036.291850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.622 5.622 3 C 0.070 3.930 4 C 0.602 3.398 5 O -0.538 6.538 6 C -0.300 4.300 7 C 0.091 3.909 8 N -0.311 5.311 9 C 0.251 3.749 10 C -0.533 4.533 11 H 0.071 0.929 12 C 0.066 3.934 13 N -0.893 5.893 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.272 1.272 18 N -0.252 5.252 19 C 0.123 3.877 20 C 0.025 3.975 21 C -0.095 4.095 22 C -0.109 4.109 23 C -0.110 4.110 24 C -0.049 4.049 25 C -0.116 4.116 26 C -0.113 4.113 27 C -0.126 4.126 28 C -0.084 4.084 29 C -0.031 4.031 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.177 0.823 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.269 0.731 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 -5.077 5.803 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.357 5.357 3 C -0.073 4.073 4 C 0.391 3.609 5 O -0.415 6.415 6 C -0.316 4.316 7 C -0.062 4.062 8 N -0.088 5.088 9 C 0.134 3.866 10 C -0.571 4.571 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.735 3.265 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.196 1.196 18 N -0.073 5.073 19 C -0.043 4.043 20 C 0.023 3.977 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.049 4.049 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.144 4.144 28 C -0.102 4.102 29 C -0.032 4.032 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.194 0.806 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.043 -5.684 5.856 15.385 hybrid contribution -0.105 0.965 0.163 0.985 sum -13.148 -4.718 6.019 15.211 Atomic orbital electron populations 1.21548 0.79508 1.02832 1.01533 1.47645 1.06620 1.06513 1.74929 1.21983 0.99089 0.84885 1.01349 1.17399 0.85878 0.82793 0.74810 1.90744 1.70019 1.31174 1.49525 1.20805 0.92639 1.12402 1.05762 1.22799 0.85219 0.98692 0.99461 1.49246 1.07106 1.32326 1.20115 1.19930 0.77738 0.94961 0.93964 1.21182 1.04495 1.35891 0.95515 0.91121 1.24922 0.97109 0.95821 0.95936 1.69912 1.21501 1.44333 1.17299 0.86318 0.79985 0.79079 0.81114 1.20208 1.20919 1.19632 1.77538 1.17285 1.09905 1.02614 1.21459 0.89914 0.97339 0.95632 1.17726 0.95745 0.91444 0.92779 1.20978 0.96067 0.99799 0.94605 1.20645 0.99963 0.94297 0.97828 1.20968 0.96567 0.96216 0.99104 1.17973 0.96987 0.94401 0.95519 1.20927 0.97698 0.94798 0.99988 1.20818 0.97150 0.99677 0.95491 1.20859 1.00557 0.94514 0.98498 1.21246 0.94624 0.95691 0.98635 1.17929 0.96642 0.93028 0.95594 0.93064 0.91569 0.90595 0.89137 0.92377 0.92224 0.80614 0.93165 0.92320 0.92166 0.86253 0.85889 0.85725 0.85805 0.86250 0.86069 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.51 59.84 0.63 1.56 16 2 N -0.62 -8.28 3.27 -190.86 -0.62 -8.91 16 3 C 0.07 0.77 10.28 59.85 0.62 1.39 16 4 C 0.60 10.30 7.13 -12.59 -0.09 10.21 16 5 O -0.54 -10.80 16.66 5.26 0.09 -10.71 16 6 C -0.30 -5.45 5.15 -102.93 -0.53 -5.98 16 7 C 0.09 1.59 9.10 -16.64 -0.15 1.44 16 8 N -0.31 -6.52 3.62 -62.04 -0.22 -6.75 16 9 C 0.25 5.84 6.21 -5.20 -0.03 5.81 16 10 C -0.53 -13.86 9.20 -34.44 -0.32 -14.17 16 11 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 14 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.25 -5.50 10.91 34.55 0.38 -5.12 16 19 C 0.12 2.44 6.08 -80.60 -0.49 1.95 16 20 C 0.03 0.46 5.79 -104.56 -0.61 -0.15 16 21 C -0.09 -1.51 9.36 -39.23 -0.37 -1.88 16 22 C -0.11 -1.45 9.93 -40.02 -0.40 -1.85 16 23 C -0.11 -1.43 9.75 -39.44 -0.38 -1.82 16 24 C -0.05 -0.74 5.74 -106.86 -0.61 -1.35 16 25 C -0.12 -1.49 9.77 -39.46 -0.39 -1.88 16 26 C -0.11 -1.44 9.95 -39.94 -0.40 -1.84 16 27 C -0.13 -1.86 9.95 -39.91 -0.40 -2.25 16 28 C -0.08 -1.48 9.29 -39.56 -0.37 -1.85 16 29 C -0.03 -0.55 5.76 -106.60 -0.61 -1.17 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.52 8.07 -51.92 -0.42 0.10 16 32 H 0.08 0.89 7.37 -51.93 -0.38 0.51 16 33 H 0.09 1.17 4.67 -51.93 -0.24 0.93 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.18 2.44 7.89 -52.49 -0.41 2.02 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.13 2.56 6.25 -52.49 -0.33 2.24 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -31.83 392.36 -9.73 -41.56 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.98 Total: 4.02 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.99 Total: -12.20 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.26 Total: -44.10 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.83 -9.73 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.692 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds