Wall clock time and date at job start Tue Mar 31 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46508 * 109.46928 * 2 1 4 4 C 1.46494 * 120.00008 * 270.00085 * 3 2 1 5 5 C 1.53009 * 109.46960 * 270.00044 * 4 3 2 6 6 C 1.38016 * 119.99794 * 90.00109 * 3 2 1 7 7 N 1.32965 * 120.00350 * 359.97438 * 6 3 2 8 8 C 1.32846 * 120.00489 * 180.02562 * 7 6 3 9 9 N 1.38700 * 119.99155 * 179.97438 * 8 7 6 10 10 C 1.35499 * 120.00157 * 180.02562 * 9 8 7 11 11 N 7.37050 * 97.01575 * 69.58678 * 2 1 3 12 12 C 1.37216 * 119.99876 * 0.02562 * 9 8 7 13 13 H 1.08000 * 119.99531 * 8.03985 * 12 9 8 14 14 C 1.38857 * 120.00043 * 188.31597 * 12 9 8 15 15 N 1.31452 * 120.00101 * 353.35050 * 14 12 9 16 16 Si 1.86804 * 120.00067 * 173.35171 * 14 12 9 17 17 H 1.48495 * 109.46891 * 94.40011 * 16 14 12 18 18 H 1.48497 * 109.46812 * 214.40106 * 16 14 12 19 19 H 1.48504 * 109.46854 * 334.39915 * 16 14 12 20 20 N 1.32871 * 120.02109 * 0.25878 * 8 7 6 21 21 C 1.32946 * 120.00370 * 359.49127 * 20 8 7 22 22 N 1.38023 * 120.00232 * 180.23342 * 21 20 8 23 23 C 1.47006 * 111.00225 * 123.90679 * 22 21 20 24 24 C 1.53093 * 109.25896 * 177.60473 * 23 22 21 25 25 O 1.43012 * 109.25770 * 56.84926 * 24 23 22 26 26 C 1.43012 * 113.74232 * 301.33166 * 25 24 23 27 27 C 1.47014 * 110.99920 * 0.27022 * 22 21 20 28 28 N 1.32913 * 120.00325 * 180.02562 * 6 3 2 29 29 H 1.08997 * 109.47751 * 60.00152 * 1 2 3 30 30 H 1.09007 * 109.46750 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47363 * 299.99545 * 1 2 3 32 32 H 1.09001 * 109.47363 * 240.00455 * 2 1 3 33 33 H 1.08997 * 109.47751 * 119.99848 * 2 1 3 34 34 H 1.09000 * 109.47370 * 30.00030 * 4 3 2 35 35 H 1.09002 * 109.47261 * 150.00015 * 4 3 2 36 36 H 1.08994 * 109.47243 * 299.99782 * 5 4 3 37 37 H 1.09000 * 109.47252 * 60.00444 * 5 4 3 38 38 H 1.08999 * 109.46974 * 179.97438 * 5 4 3 39 39 H 0.96996 * 119.99874 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.51096 * 297.54455 * 23 22 21 41 41 H 1.09009 * 109.50679 * 57.66959 * 23 22 21 42 42 H 1.08998 * 109.50670 * 296.91333 * 24 23 22 43 43 H 1.09001 * 109.54141 * 176.80626 * 24 23 22 44 44 H 1.09001 * 109.50262 * 298.73361 * 26 25 24 45 45 H 1.08994 * 109.54672 * 178.62923 * 26 25 24 46 46 H 1.09001 * 109.51007 * 302.33474 * 27 22 21 47 47 H 1.09003 * 109.50867 * 62.46045 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2483 2.0319 1.1953 7 7 2.0262 1.4053 2.3468 8 6 2.2471 2.0316 3.4973 9 7 2.0149 1.3779 4.6984 10 6 2.2396 2.0167 5.8720 11 7 2.4302 2.5515 6.8559 12 6 1.5576 0.0842 4.6980 13 1 1.5018 -0.4685 3.7719 14 6 1.1611 -0.5124 5.8876 15 7 1.3452 0.1124 7.0295 16 14 0.3662 -2.2027 5.8653 17 1 1.4043 -3.2408 6.0882 18 1 -0.6542 -2.2839 6.9412 19 1 -0.2835 -2.4268 4.5489 20 7 2.6851 3.2861 3.4979 21 6 2.9120 3.9115 2.3469 22 7 3.3716 5.2130 2.3476 23 6 4.6247 5.3297 1.5880 24 6 5.0661 6.7954 1.5639 25 8 5.2006 7.2696 2.9064 26 6 3.9986 7.1713 3.6750 27 6 3.5464 5.7093 3.7203 28 7 2.6908 3.2852 1.1954 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1411 -1.1384 36 1 4.3882 2.2156 -0.9508 37 1 3.8744 0.7623 -1.8408 38 1 3.8890 2.3450 -2.6546 39 1 1.0686 -0.3045 7.8604 40 1 5.3966 4.7249 2.0639 41 1 4.4657 4.9806 0.5676 42 1 4.3190 7.3919 1.0404 43 1 6.0239 6.8794 1.0505 44 1 3.2204 7.7787 3.2128 45 1 4.1837 7.5266 4.6886 46 1 2.6002 5.6374 4.2567 47 1 4.3010 5.1106 4.2305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005016882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:58 Heat of formation + Delta-G solvation = 109.692773 kcal Electronic energy + Delta-G solvation = -31789.990611 eV Core-core repulsion = 27624.652874 eV Total energy + Delta-G solvation = -4165.337737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.00249 -39.44392 -37.86300 -37.10654 -35.54949 -33.68337 -32.90664 -32.26201 -31.80821 -31.25687 -30.76183 -28.75470 -27.46135 -25.54700 -24.42634 -23.73363 -23.49864 -22.45188 -21.32405 -20.37612 -19.47843 -18.23734 -17.46777 -16.61173 -16.18185 -15.99935 -15.64175 -15.18754 -15.04935 -15.01400 -14.65595 -14.59280 -14.09792 -14.05656 -13.86445 -13.64817 -13.38310 -13.14460 -12.77980 -12.44090 -12.34160 -12.31535 -11.87608 -11.74643 -11.61166 -11.49138 -11.37778 -11.22522 -11.07508 -10.96239 -10.89003 -10.73422 -10.68063 -10.57968 -10.53040 -10.50559 -9.71968 -9.42710 -8.88408 -8.63497 -8.41699 -8.03146 -7.87602 -6.64308 -4.24592 1.80870 2.02915 2.76073 3.05625 3.08638 3.15017 3.42213 3.47658 3.83651 4.02714 4.41459 4.45956 4.59349 4.66973 4.90724 4.92165 5.04168 5.10621 5.11575 5.17516 5.27375 5.29812 5.32211 5.37154 5.47206 5.57524 5.58879 5.60206 5.63613 5.68190 5.76525 5.83822 5.96788 5.98381 6.08612 6.17134 6.26966 6.31140 6.47621 6.58976 6.88272 6.96597 7.07149 7.10259 7.24135 7.68680 7.76489 7.92385 8.12233 8.67657 8.89040 9.25690 9.73688 10.37289 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008609 B = 0.004738 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.448347 B = 5908.633990 C = 8856.028748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.580 5.580 4 C 0.132 3.868 5 C -0.164 4.164 6 C 0.636 3.364 7 N -0.635 5.635 8 C 0.602 3.398 9 N -0.296 5.296 10 C 0.472 3.528 11 N -0.447 5.447 12 C -0.313 4.313 13 H 0.134 0.866 14 C 0.026 3.974 15 N -0.861 5.861 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.262 1.262 20 N -0.663 5.663 21 C 0.582 3.418 22 N -0.457 5.457 23 C 0.035 3.965 24 C 0.065 3.935 25 O -0.387 6.387 26 C 0.063 3.937 27 C 0.036 3.964 28 N -0.660 5.660 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.282 0.718 40 H 0.050 0.950 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 4.985 -16.236 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.007 3.993 3 N -0.298 5.298 4 C 0.009 3.991 5 C -0.223 4.223 6 C 0.271 3.729 7 N -0.376 5.376 8 C 0.241 3.759 9 N 0.006 4.994 10 C 0.068 3.932 11 N -0.138 5.138 12 C -0.441 4.441 13 H 0.151 0.849 14 C -0.181 4.181 15 N -0.496 5.496 16 Si 0.772 3.228 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.186 1.186 20 N -0.404 5.404 21 C 0.215 3.785 22 N -0.178 5.178 23 C -0.092 4.092 24 C -0.012 4.012 25 O -0.305 6.305 26 C -0.014 4.014 27 C -0.092 4.092 28 N -0.402 5.402 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.078 0.922 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.869 5.875 -14.654 16.046 hybrid contribution -0.449 -1.773 0.047 1.830 sum 2.420 4.101 -14.607 15.364 Atomic orbital electron populations 1.22129 0.96303 1.01814 1.02121 1.21367 0.94067 0.80942 1.02971 1.45971 1.69149 1.13412 1.01303 1.21303 0.95802 0.98632 0.83405 1.22141 0.97681 1.01375 1.01101 1.18649 0.84235 0.84202 0.85794 1.67832 1.34342 1.39302 0.96143 1.18206 0.88688 0.83952 0.85051 1.37173 1.55602 1.11055 0.95618 1.22369 0.92715 0.90847 0.87254 1.81365 1.16267 1.11581 1.04632 1.20141 1.41621 0.85034 0.97294 0.84890 1.25571 0.96770 1.01314 0.94443 1.69667 1.43003 1.38620 0.98359 0.85568 0.78809 0.79651 0.78766 1.19941 1.20458 1.18606 1.68287 1.31204 1.10829 1.30087 1.20137 0.87262 0.87658 0.83466 1.58466 1.29112 1.14058 1.16175 1.22789 0.88025 0.98261 1.00129 1.22699 1.01939 0.92348 0.84221 1.87981 1.34451 1.84261 1.23807 1.22790 0.86960 0.94915 0.96730 1.22673 1.03963 0.95413 0.87140 1.67905 1.32641 1.10455 1.29186 0.93393 0.91898 0.91756 0.91309 0.88951 0.91220 0.89491 0.92273 0.93060 0.92070 0.90610 0.93165 0.87801 0.91992 0.88059 0.92242 0.87838 0.88239 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.24 37.15 0.38 -1.67 16 2 C 0.13 1.68 6.14 -4.04 -0.02 1.65 16 3 N -0.58 -8.50 2.56 -175.90 -0.45 -8.95 16 4 C 0.13 1.50 6.14 -4.04 -0.02 1.47 16 5 C -0.16 -1.66 10.24 37.16 0.38 -1.28 16 6 C 0.64 11.94 8.19 -322.22 -2.64 9.30 16 7 N -0.63 -13.70 8.02 -14.65 -0.12 -13.81 16 8 C 0.60 14.35 8.11 -321.44 -2.61 11.74 16 9 N -0.30 -7.69 2.85 -26.97 -0.08 -7.77 16 10 C 0.47 12.85 12.20 -102.19 -1.25 11.61 16 11 N -0.45 -12.26 18.02 41.27 0.74 -11.51 16 12 C -0.31 -7.95 9.54 -14.91 -0.14 -8.10 16 13 H 0.13 3.21 7.14 -52.49 -0.37 2.84 16 14 C 0.03 0.66 5.44 -17.48 -0.10 0.56 16 15 N -0.86 -23.40 10.42 55.49 0.58 -22.82 16 16 Si 0.95 19.26 29.56 -169.99 -5.02 14.23 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 N -0.66 -14.87 8.03 -14.64 -0.12 -14.98 16 21 C 0.58 11.36 7.19 -322.20 -2.32 9.05 16 22 N -0.46 -7.45 4.78 -174.96 -0.84 -8.29 16 23 C 0.04 0.47 5.50 -3.72 -0.02 0.45 16 24 C 0.07 0.71 7.01 37.21 0.26 0.97 16 25 O -0.39 -5.05 10.83 -35.23 -0.38 -5.43 16 26 C 0.06 0.79 7.01 37.21 0.26 1.05 16 27 C 0.04 0.56 4.81 -3.71 -0.02 0.54 16 28 N -0.66 -12.20 8.61 -14.78 -0.13 -12.32 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 34 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.09 1.09 7.36 -51.93 -0.38 0.71 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.32 7.70 -51.92 -0.40 0.92 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.10 1.71 7.85 -51.93 -0.41 1.31 16 47 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -30.55 392.21 -14.74 -45.28 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.99 Total: 3.11 kcal Atomic # 6 Polarization: 45.20 SS G_CDS: -7.85 Total: 37.35 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -0.40 Total: -100.46 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.55 -14.74 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005016882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.977 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds