Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86806 * 119.99644 * 2 1 4 4 H 1.48508 * 109.46722 * 240.00082 * 3 2 1 5 5 H 1.48493 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47322 * 120.00431 * 3 2 1 7 7 C 1.39859 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99891 * 195.21978 * 7 2 1 9 9 C 1.41141 * 120.00037 * 15.21790 * 7 2 1 10 10 C 1.40880 * 120.15820 * 205.12476 * 9 7 2 11 11 C 1.36343 * 119.84036 * 180.02562 * 10 9 7 12 12 C 1.39572 * 120.15602 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.83887 * 179.97438 * 12 11 10 14 14 S 1.65595 * 119.99979 * 74.06789 * 13 12 11 15 15 O 1.42099 * 106.40514 * 309.32137 * 14 13 12 16 16 O 1.42100 * 106.40174 * 176.39955 * 14 13 12 17 17 C 1.76198 * 107.21648 * 62.86282 * 14 13 12 18 18 C 1.38261 * 119.99922 * 264.48875 * 17 14 13 19 19 C 1.38209 * 120.00000 * 179.97438 * 18 17 14 20 20 C 1.38262 * 119.99985 * 0.02562 * 19 18 17 21 21 C 1.38209 * 119.99907 * 0.02562 * 20 19 18 22 22 N 1.48024 * 119.99554 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99485 * 179.97438 * 22 21 20 24 24 O 1.21795 * 120.00330 * 359.93340 * 22 21 20 25 25 C 1.38210 * 119.99924 * 84.47413 * 17 14 13 26 26 C 1.39560 * 120.31657 * 0.25644 * 12 11 10 27 27 C 1.36345 * 120.16161 * 359.48277 * 26 12 11 28 28 H 0.96994 * 120.00213 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.08152 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.92137 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99751 * 254.06834 * 13 12 11 32 32 H 1.08006 * 119.99845 * 0.02562 * 18 17 14 33 33 H 1.08000 * 120.00281 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.99763 * 180.02562 * 20 19 18 35 35 H 1.07992 * 120.00649 * 359.71835 * 25 17 14 36 36 H 1.07996 * 119.92004 * 179.72441 * 26 12 11 37 37 H 1.08004 * 120.08202 * 180.23413 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2126 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6966 1.2124 7 6 2.0084 -1.2112 -0.0005 8 1 3.0600 -1.2276 0.2450 9 6 1.3399 -2.4120 -0.3219 10 6 1.8255 -3.6433 0.1604 11 6 1.1750 -4.7994 -0.1544 12 6 0.0308 -4.7650 -0.9531 13 7 -0.6263 -5.9464 -1.2701 14 16 -1.5358 -6.7213 -0.1237 15 8 -0.7108 -6.8455 1.0266 16 8 -2.1370 -7.8334 -0.7727 17 6 -2.8498 -5.6351 0.3214 18 6 -2.7249 -4.8161 1.4283 19 6 -3.7553 -3.9636 1.7771 20 6 -4.9114 -3.9302 1.0194 21 6 -5.0367 -4.7497 -0.0865 22 7 -6.2741 -4.7135 -0.8980 23 8 -6.3844 -5.4353 -1.8729 24 8 -7.1823 -3.9625 -0.5905 25 6 -4.0053 -5.6015 -0.4363 26 6 -0.4526 -3.5494 -1.4393 27 6 0.1848 -2.3849 -1.1280 28 1 -0.4850 0.8400 0.0004 29 1 2.7110 -3.6715 0.7782 30 1 1.5463 -5.7441 0.2143 31 1 -0.5524 -6.3178 -2.1632 32 1 -1.8216 -4.8419 2.0199 33 1 -3.6576 -3.3236 2.6415 34 1 -5.7164 -3.2638 1.2917 35 1 -4.1011 -6.2377 -1.3036 36 1 -1.3359 -3.5306 -2.0604 37 1 -0.1926 -1.4446 -1.5019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005049959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = -28.619777 kcal Electronic energy + Delta-G solvation = -27774.150788 eV Core-core repulsion = 23611.597886 eV Total energy + Delta-G solvation = -4162.552901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27987 -39.50827 -38.20657 -37.05149 -36.66241 -35.72879 -34.99728 -33.03729 -32.29481 -31.82115 -29.79515 -28.94414 -26.72491 -24.96148 -23.81794 -22.72702 -21.35755 -21.00971 -20.16010 -18.95837 -18.73006 -17.66080 -17.62233 -17.42367 -17.12868 -16.81703 -16.25039 -15.80341 -15.50767 -14.71894 -14.43912 -14.19435 -13.87751 -13.55612 -13.01944 -12.78918 -12.59622 -12.46883 -12.30613 -11.96743 -11.87284 -11.82495 -11.67123 -11.53948 -11.37497 -11.34788 -11.23171 -11.08629 -11.03584 -10.91174 -10.17053 -10.05656 -9.99167 -9.75490 -9.45064 -9.15221 -7.85834 -7.56922 -7.07688 -4.66633 -0.30634 0.27578 0.55597 1.19385 1.25958 2.41283 2.82948 2.85465 2.90085 2.91211 2.97200 3.23772 3.69192 3.81414 4.08839 4.24816 4.29768 4.45717 4.60364 4.68636 5.00326 5.17346 5.34184 5.35352 5.59073 5.68564 5.97817 6.00172 6.08054 6.17599 6.30733 6.70853 6.76249 6.88057 7.02855 7.15680 7.32036 7.53796 7.72791 7.76329 7.82424 7.97615 8.31378 8.55859 8.65395 9.83968 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003939 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.140398 B = 7106.464812 C = 8812.742662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.442 4.442 8 H 0.083 0.917 9 C 0.120 3.880 10 C -0.223 4.223 11 C -0.060 4.060 12 C -0.045 4.045 13 N -1.023 6.023 14 S 2.674 3.326 15 O -0.945 6.945 16 O -0.971 6.971 17 C -0.666 4.666 18 C 0.044 3.956 19 C -0.130 4.130 20 C -0.009 4.009 21 C -0.070 4.070 22 N 0.032 4.968 23 O -0.159 6.159 24 O -0.161 6.161 25 C 0.043 3.957 26 C -0.084 4.084 27 C -0.165 4.165 28 H 0.285 0.715 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.411 0.589 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.089 0.911 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 -4.020 1.903 6.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.116 3.884 10 C -0.244 4.244 11 C -0.081 4.081 12 C -0.142 4.142 13 N -0.778 5.778 14 S 2.764 3.236 15 O -0.935 6.935 16 O -0.961 6.961 17 C -0.749 4.749 18 C 0.025 3.975 19 C -0.150 4.150 20 C -0.028 4.028 21 C -0.153 4.153 22 N 0.552 4.448 23 O -0.375 6.375 24 O -0.377 6.377 25 C 0.023 3.977 26 C -0.106 4.106 27 C -0.185 4.185 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.248 0.752 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.107 0.893 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.937 -4.704 2.832 7.384 hybrid contribution -0.518 1.431 -0.620 1.644 sum -5.455 -3.272 2.212 6.735 Atomic orbital electron populations 1.69808 1.07695 1.29931 1.33167 1.26015 0.94866 1.01778 0.91987 0.86256 0.80145 0.79554 0.80301 1.18549 1.20117 1.18704 1.19716 0.97530 0.90945 1.38896 0.89843 1.17764 0.90926 0.92201 0.87497 1.20689 1.03723 0.92537 1.07428 1.20614 0.93219 0.97630 0.96670 1.16607 0.99705 0.83422 1.14476 1.52129 1.61742 1.37025 1.26945 1.03333 0.73083 0.72998 0.74229 1.93584 1.65085 1.84876 1.49961 1.93561 1.77923 1.49080 1.75509 1.31464 1.16456 1.20726 1.06281 1.21533 0.98291 0.86769 0.90955 1.21418 0.92194 1.00089 1.01255 1.21324 0.98641 0.93180 0.89684 1.21143 0.88011 1.07469 0.98695 1.43538 1.02020 0.98885 1.00387 1.94557 1.86836 1.38872 1.17228 1.94525 1.32369 1.36057 1.74740 1.20678 0.88746 0.91602 0.96693 1.20622 0.98389 0.92419 0.99173 1.21028 0.99154 0.96704 1.01660 0.90353 0.88216 0.88011 0.75162 0.81951 0.82483 0.82404 0.81841 0.89260 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.72 10.84 55.54 0.60 -17.12 16 2 C 0.07 1.62 5.19 -17.34 -0.09 1.53 16 3 Si 0.91 16.59 29.59 -169.99 -5.03 11.56 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.44 -10.29 9.04 -37.87 -0.34 -10.63 16 8 H 0.08 1.86 7.89 -52.48 -0.41 1.44 16 9 C 0.12 2.78 5.58 -106.79 -0.60 2.19 16 10 C -0.22 -4.81 9.74 -39.27 -0.38 -5.19 16 11 C -0.06 -1.20 9.19 -39.77 -0.37 -1.57 16 12 C -0.05 -0.85 5.80 -83.69 -0.49 -1.34 16 13 N -1.02 -15.86 5.65 32.51 0.18 -15.67 16 14 S 2.67 41.28 5.70 -107.50 -0.61 40.67 16 15 O -0.95 -16.66 16.08 -57.17 -0.92 -17.58 16 16 O -0.97 -16.15 17.44 -57.17 -1.00 -17.15 16 17 C -0.67 -9.53 5.85 -39.58 -0.23 -9.76 16 18 C 0.04 0.58 9.53 -39.58 -0.38 0.20 16 19 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 20 C -0.01 -0.11 9.56 -39.58 -0.38 -0.48 16 21 C -0.07 -0.96 6.85 -79.95 -0.55 -1.51 16 22 N 0.03 0.48 4.45 33.96 0.15 0.63 16 23 O -0.16 -2.50 18.45 -29.46 -0.54 -3.04 16 24 O -0.16 -2.42 18.45 -29.46 -0.54 -2.96 16 25 C 0.04 0.60 9.03 -39.58 -0.36 0.24 16 26 C -0.08 -1.69 9.90 -39.77 -0.39 -2.08 16 27 C -0.17 -3.72 8.63 -39.26 -0.34 -4.06 16 28 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 29 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.10 1.91 7.84 -52.49 -0.41 1.50 16 31 H 0.41 5.34 8.95 -34.47 -0.31 5.03 16 32 H 0.16 2.10 7.51 -52.48 -0.39 1.70 16 33 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.16 1.48 7.61 -52.49 -0.40 1.08 16 35 H 0.16 2.12 7.31 -52.49 -0.38 1.74 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.90 6.10 -52.48 -0.32 2.58 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -27.82 347.56 -10.79 -38.61 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -3.03 Total: 11.14 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -5.28 Total: -34.33 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.94 Total: -32.15 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -3.00 Total: -40.73 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 41.28 SS G_CDS: -0.61 Total: 40.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.82 -10.79 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005049959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.989 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds